Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           ----------->GT1                                                       --------->TOE2(3)        --------->DAG2                        <---------GLK1(2)               ----------->GT1       --------->SPL7    --------->ATHB12   <---------TOE2(3)               <---------ARR14(2)      <---------MYB52(1) -------->HAHB4     <---------TOE1(3)               --------->ARR14(2)      -    --------->YAB1      <---------ATHB12  ------>ZmHOX2a(1)                ------>MYB46(1)        --- ------>ANAC58     --------->TOE2(3)    --------->YAB1--------->ANAC46     ------>MYB83          ---- ------>ANAC58    --------->YAB1     --------->WOX13(1)           --------->TOE2(3)              <---   acgaaatcgtaaggtgagaaacataaatgattcaaaaatcaatcctaaggttctctactctactctaatctaaaaccaaatcgtcaattgaaaactacaa  13769600                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                <----                    <---------TOE2(3)                                                           <----         --------->WOX13(1)                                             ----------->GT1         <----        ---------->DOF2                                               ----------->GT1           -----     --------->TOE2(3)<---------GLK1(2)                              --------->DAG2             -----    <-------TEIL    <---------TOE1(3)                               --------->SPL7              <---- ------>TEIL --------->WOX13(1)                                    <---------MYB52(1)          <----- ---->GAMYB<---------ATHB12                   ------>MYB83 --------->ANAC58                 --------- ----->MYB46(3)   ------>ZmHOX2a(1)           ------>MYB46(1)    --------->YAB1             <-------- ------MYB52(2) --------->YAB1       --------->TOE2(3)     --------->ANAC58               <------ZmHOX2a(1)   cgaacatccataaatcaatcctaaggttctctactctaatctaaaaccaaatgcttcaaaaacgaaatcgtaaggtgaaaaacctgttggaaggatagcc  13769700                                  <------NtERF2                                <---------ANAC46                                <---------DEAR3(1)                               <---------ABI4(1)                               <------NtERF2                               --------->ATERF1(1)                               <---------LBD16                               <---------At4g35610                               --------->At4g35610                              <---------RAP2.6(1)                              <---------RRTF1(1)                              ------>NtERF2                              <---------ATERF1(1)                              <---------DEAR4(2)                              <---------ERF1                              <---------ORA47(2)                             <---------RAP2.3(3)                             <---------RRTF1(2)                             --------->ALFIN1      --------->ZAT18        <---------RRTF1(3)      <---------ZAT14        <---------RAP2.6(2)      --------->ZAT14        <---------ANAC46 <------NtERF2               <---------RAP2.3(2) ----NtERF2                  <---------DEAR3(1) ------>ATERF1(1)            --------->DEAR3(1) -------LBD16               <---------ABI4(1) ------ORA47(2)             <------NtERF2 ----->LBD16                --------->ATERF1(1) ------DEAR4(2)            <---------ATERF1(1)                                   --------->MYB52(1) ------ATERF1(1)           <---------DEAR4(2)                        <---------LBD16 -->NtERF2                 <---------RAP2.3(1)                      --------->MYB52(1) -----DEAR3(1)            <---------RAP2.3(2)                      ----------->HVH21 -----RAP2.3(3)           <---------DEAR3(1) <---------DEAR3(1)   <---------WOX13(1) -----RAP2.3(2)          <---------At4g35610 <---------AtMYB61   --------->ARR14(2) ---->ATERF1(2)   <---------MYB46(3)    --------->GLK1(2)   ------->GAMYB     --------->ANAC46 ---->DEAR3(1)  --------->SPL7<---------RAP2.3(1)         --------->RAP2.6(3) --------->ANAC58 -----ATERF1(2)--------->MYB52(1)--------->LBD16         --------->MYB52(1)   --------->ANAC58   <--- ----LBD16    <---------SPL7--------->RAP2.3(1)          <---------DOF5.7(2) <-------TEIL       ----- >GLK1(1)    <---------ANAC58<---------ATERF1(2)        ----------->HVH21  <---------SPL7  ---------- -GLK1(1)    <---------ANAC58--------->ATERF1(2)--------->ALFIN1 <---------ARR14(2)   ------->TEIL   ggcggaagtgaactggcgaacggttgaagcggcggcggagaaaatcggaggtggagaggtaacggcagattgacggaggtacgaaacggacctcaaggcg  13769800     --------->MYB52(1)    --------->DEAR3(1)    ----------->HVH21    ------->GAMYB   <------------AtMYB77   --------->MYB46(3)   --------->DEAR3(2)                 <---------ANAC46 --------->ARR14(2)            <-------TEIL <---------ARR14(2)        --------->ALFIN1 --------->MYB52(1)        <---------AtMYB61 ---NtERF2            <---------TOE1(1)                     --------->CCA1(2) ---->LBD16           <---------TOE2(1)          --------->YAB1        <----------ID1 >DOF2       <----------DOF2<---------MYB46(3) --------->GLK1(2)       ----------->GT1          -----   gagtaaccgacggagcttttacgaacgaggtggttcatcttcgtgggagaatcagaaaaatgatatgtgaagaaggaaaaaccccaaaacaaaacctctt  13769900                                                               --------->ALFIN1                                                             <---------AtLEC2                                                             <---------ANAC58                                                             <---------ANAC46                                                    --------->ANAC58                                                    --------->ANAC58               --------->ATHB12                                                    --------->ANAC55(2)           <---------AHL20(1)                                                    --------->ANAC46              --------->AHL20(1)                                                    <---------ANAC55(2)        --------->AHL20(1)                                               <---------GLK1(1)               <---------AHL20(1)                                              <---------ARR11(3)      <------ZmHOX2a(1)                                              --------->ARR11(3)    --------->ALFIN1<------------CBF                                      <------ZmHOX2a(2)      <---------ANAC58  --------->AHL20(2)   <---------ANAC58                --------->LBD16  --------->ANAC55(1)  <------NtERF2   <---------ANAC46               <---------TOE1(2)<---------LBD16 *TSS ----------->GT1    <---------   <---------ANAC58              <---------LBD16  <-----------GT1 <---------ANAC46--------->AHL20(2) ---->YAB1       <---------------AtSPL8      --------->HSFB2a(1)--------->REM1(2) <---------AHL20(2)   ataatgcgtagtcaatattcaggtactgtttcttcgccggatcacgaagatttcacgcaatatgcgtggagaggaggcaaatattttattgggctttagt  13770000                                                                                    --------->ATHB12                                                                               <---------YAB1                                 --------->ZAT6                             <---------AHL20(2)                      <------------CBF                                      --------->AHL20(2)                     --------->ATHB51                                    --------->AHL20(2)                 <---------MYB52(1)                        <-----------GT1  <---------AHL20(1)   <---                <-------GAMYB <---------CCA1(2)           --------->CCA1(1) --------->AHL20(1)  <----      <------MYB46(1)--------->ATHB12              ----------->RAV1(2)   <---------AHL20(2)   <------     --------->MYB111(1)    <---------ANAC58      ------>NtERF2         --------->AHL20(2)    <------     --------->MYB59<---------YAB1               --------->ANAC58       <---------AHL20(2)    <------     --------->MYB46(2)     <---------ANAC58     --------->ANAC58      <---------YAB1        <------- -DOF2<------MYB83  --------->ICU4             <---------At4g35610  <---------MYB52(1)      <--------   ggatagtttggtacctgctgttattattgggcttatctctagcccattcagacgcctgaaatatccatctgttattaatttattattcattgttttggtt  13770100     ---------->DOF2                                                         <------MYB46(1)   <---------AHL20(2)                                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------YAB1                                                 --------->MYB52(1) ----GAMYB                                                      <---------ICU4 -----MYB46(3)                                                 <---------ATHB51       <---------DAG2 ---ANAC58                                                 --------->AHL20(2)<------MYB83  <---------TOE2(3) -GAMYB                                                  --------->ANAC58 <---------MYB52(1) <------ZmHOX2a(1) ---ANAC58                                   ----------->GT1   <---------AHL20(2) --------->MYB46(3) --MYB46(3)                        --------->ATHB12      --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -AtMYB61                         <-------TEIL<---------HSFB2a(2)      <------NtERF2  <----------DOF2   gttattttaaagagttttttttagttgaatccaaaattcattgtgaatcgagaaattgcaagaaaataatggctccgattggtaaccacttttgaggaaa  13770200                                                                                                <----                                                                                           --------->REM1(1)                                                                                          <xxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                         ------>ZmHOX2a(1)                                                                                       ==============                                                                                       ==============                                                                                       ------>ZmHOX2a(2)                                                                                      ===============                                                                                      ===============                                                                                      <------ZmHOX2a(2)                                                                                      xxxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                     --------->ARR14(2)                                                                                     <---------ARR14(2)                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   <---------MYB46(3)                                                                                   xxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  --------->ALFIN1                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                              <-----------RAV1(2)----                                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      <----------DOF2                              ------>ZmHOX2a(2)xxxxxxxxxxxxxxxxx                      <---------DAG2                               ----------------->AGL2<xxxxxxxxxxx              <---------ANAC58                        --------->ANAC58  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              <---------ANAC46                        --------->ANAC58  xxxxxxxxxxxxxxxx>smallRNA(i)-              <---------ANAC58                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxx         ---------->DOF2                   <-----------GT1         =============================HOX2a_HOX2a        <------ZmHOX2a(1)       ------>ZmHOX2a(1)   <---------AtLEC2<xxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ATHB12<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ANAC46 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   acaatgaataggaaagtcgtgttcctttttgttcctcggtattttttaccatttgcaaggaatttttgatccattttcagacaggtggatcctacatttt  13770300          ------>ZmHOX2a(1)         --------->TOE2(3)    <---------ICU4   <---------YAB1   <---------ATHB12 -------GT1 xxxxxxxxxxxxsmallRNA(i2) xxxxxxxx>smallRNA(le3) ================HOX2a_HOX2a ======HOX2a_HOX2a ================HOX2a_HOX2a ======HOX2a_HOX2a xxxxxxx>smallRNA(le3) xxxxxxxxxsmallRNA(se3) xxxxxx>smallRNA(si3) xxxx>smallRNA(fl3) xxxxx>smallRNA(si3) xxxxx>smallRNA(fl3) xxxx>smallRNA(si3) xxx>smallRNA(i2) xxx>smallRNA(si3) xx>smallRNA(fl3) x>smallRNA(fl3) >smallRNA(si3) xx>smallRNA(si3) x>smallRNA(si3) xx>smallRNA(le3) >smallRNA(fl3) x>smallRNA(le3) x>smallRNA(fl3) x>smallRNA(si3) >smallRNA(se3)                                                                                   <-- x>smallRNA(se3)                                                                 ------>MYB46(1)  <-- >smallRNA(le3)                                                                  --------->MYB52(1) ------>ID1              --------->ATHB12                ------>ZmHOX2a(1)       ------>MYB83-------- xxxxx>smallRNA(l2)      --------->YAB1                 <---------YAB1         --------->MYB46(3) --- xxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      xxxxxxxxxxxxxxxx>smallRNA(s) ----->ZmHOX2a(1)       <---------YAB1         --------->LBD16        <----------DOF2  ------>NtERF2 xsmallRNA(s)     ---------->DOF2           ------>ZmHOX2a(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   tcctcatcattcctcaaaaaaaaagaatgatagaacaaaattgttcctccccaaaattcctattgttcatttctttggtcaccaatcggagccaatataa  13770400                                                                    <---------AHL20(2)                                                                    --------->AHL20(2)                                                               ------->TEIL              --------->ANAC55(2)                                                            --------->ICU4               <---------ANAC55(2)                                                            <---------YAB1              <-------TEIL                                         --------->ICU4   --------->YAB1           --------->AHL20(2)                                    <---------ANAC55(2)  <---------YAB1            <---------AHL20(2) -------AHL20(2)                    --------->ANAC55(2) --------->AHL20(2)     <------ZmHOX2a(1) -------AHL20(1)           <---------HSFB2a(2)          --------->AHL20(1)    ----------->GT1  <----- ->AHL20(2)                --------->HSFB2a(2)          <---------AHL20(2)   --------->ANAC58  <----- ------>AHL20(2) <----------DOF2--------->ARR11(3)     --------->YAB1        --------->ANAC58  ------   aaaatttgggtaatggtttcttttagtttctaaaaatcatgtaatgatgtgagtgaattataatgaatatttatattgtaaggaataaaatacatatttt  13770500  Previous    Next  AGI:  At4g27585.1    Description:  band 7 family protein. similar to band 7 family protein [Arabidopsis thaliana] (TAIR:AT5G54100.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45655.1); contains InterPro domain Stomatin; (InterPro:IPR001972); contains InterPro domain Band 7 protein (InterPro:IPR001107) Range:  from: 13766769    to: 13769967    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version