Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              --------->ATHB12                                           --------->ICU4                                           <---------YAB1     <---------ANAC55(1)                                         --------->YAB1       <---------ANAC46                                        --------->ICU4        <---------ANAC55(2)            <-------                  <---------TOE2(3)     <---------YAB1        --------->ANAC55(2)          --------->TOE2(3)                 --------->YAB1       <---------ICU4<----------DOF2            --------->ATHB12                 <---------ICU4      --------->ICU4--------->TOE2(3)          <---------ATHB12              --------->YAB1      <------NtERF2   --------->At4g35610 <---------ICU4       --------->ANAC55(2) --------->ICU4 --------->ICU4  --------->ALFIN1  <---------At4g35610------>ZmHOX2a(1)   <---------YAB1   ggcataatgaaacccataataatgtttttaagaggtggcattatgatgatttagcttaatggttatgtgtcctcatttcaatctttgggttatacttaat  13739400                                                                                               <-----                                                                                              -------                                                                                              -------                                                --------->ICU4 <---------YAB1                 <------                                 ------>ZmHOX2a(1)     <---------AHL20(2)                     <------                               ----------------->AG   <---------YAB1    ---------->DOF2       <------       ----------->GT1         =====================================MADS_MADS                 -------     <---------YAB1           <-----------------AGL1<---------------AGL15              ----------->GT1   <--------HAHB4  --------->AHL20(2)           --------->AHL20(2)   <---------ANAC55(2)     --------  <---------YAB1 ----------->GT1--------->TOE2(3)   --------------->AGL15             <---------ZAT6 --AHL20(2)   <---------AHL20(1)--------->TOE1(3)  <---------YAB1 ------->TEIL      <---------ANAC46<   ttgtattattagttaatatatgtaaatatgttttccttaatggtattggatttattattaatggtatgaatatgtaaagaagtatttagtggaaaatata  13739500     <---------CCA1(2) ----AHL20(2) -->ARR11(3) -->AHL20(2) ---AHL20(1) ---ARR11(3)                                                                                    <---- ---AHL20(2)                --------->AHL20(2)                     <---------AHL20(2)       <-------- -->AHL20(1)                <---------AHL20(2)                    <---------YAB1           <---------YAB1 ->AHL20(2)                <---------MYB52(1)                    <---------AHL20(2)       <---------AHL20(2) -----------GT1  --------->TOE2(3)                         --------->YAB1       --------->MYB46(3)   tttttctatatcccattcacctaaattccattaattgtcaaacatttagagctattagctatagtatttttatttgatatcaacaactctatttttattt  13739600                                                  --------->ATHB12                           <---------ARR11(3)     <---------ICU4                                   --                           --------->ARR11(3)     -------->HAHB4                        --------->TOE2(3)             <---------------AGL15      <---------AHL20(1)                             ----------->GT1             <----------DOF2    <-----------GT1  <---------YAB1                        --------->ANAC58        <----------DOF2  <---------TOE2(3)   <---------AHL20(2)                        <---------ANAC55(2)        <---------DAG2   <---------YAB1 --------->AHL20(2)             --------->HSFB2a(2)     <-----    <---------ZAT18      <---------TOE1(3) <---------AHL20(2)          <---------HSFB2a(2)    -------    <---------ZAT14<---------TOE1(3)    --------->AHL20(1) ----------->GT1 <---------AHL20(2)--------    --------->ZAT14<---------TOE2(3) ------>MYB83--------->ICU4  <---------ARR11(3)    --------->ANAC55(2) -----AHL20(2)   <---------AHL20(2)  ------>MYB46(1)     ---------->DOF2----------->GT1--------->ANAC46 -AHL20(2)   --------------->AGL15 <---------MYB59--------->YAB1 --------->ARR11(3)    --------->ANAC58   gattactacacttttctttttaatgttaagatttataccaaatattttaaaatgattacaaaagtaaaatcttctagtaaattgaaactacgtaaataaa  13739700                                                 --------->AHL20(2)                                                 <---------ICU4                <---------At5g28300                                                 --------->ATHB51             <-----------GT1                   --------->AHL20(2)            <---------AHL20(2)           --------->MYB52(1)         <----------DOF2              <---------DAG2                   --------->GLK1(2)      <-----------GT1    <-----------GT1     --------->AHL20(2)        <---------ARR11(3) --------->GT1   --------->ANAC55(2)  <----------DOF2                  --------->ARR11(3) ----AHL20(2)    <---------ANAC55(2) <---------DAG2<---------YAB1     --------->RVE1(1) <-----------GT1 -->YAB1 --------->TOE2(3)------------>CBF   <---------AHL20(2) --------->TOE2(3)  <---------ANAC46 ->AHL20(2) --------->MYB52(2)  <-----------GT1 --------->ICU4  --------->TOE1(3)------->GAMYB    <--   aatgtttattactttagttacttaaatatacaatttcccccttttttttaattattttttgctaaaccctaaaaatcttttaacggcgtttatcgttctt  13739800            *TSS           <------NtERF2           --------->LBD16                                               <----------DOF2           ------>NtERF2                                             <---------ANAC58          --------->DEAR3(1)                                         <---------ANAC58         --------->ATERF1(1)                                         <---------ANAC46        <---------ATERF1(1)                                     <-----------RAV1(1)        ------>NtERF2                              <---------YAB1 <---------MYB52(1)        --------->LBD16                     <---------GLK1(2)  <------------AtMYB77       --------->ANAC46                 --------->MYB52(1)    ------>MYB83                      <----       --------->DEAR3(1)               <---------DOF5.7(2)   ------>MYB46(1)                 <------ -------ALFIN1                    <-----------RAV1(2)        --------->MYB52(1)       <---------AGP1   ccactctctccgccgcgttctctgtctctcaaaccctcagggtaacgattcttcttattagaccaactgttgcttctttcgcatcgtagctctgagattg  13739900                                                                                       --------->GLK1(1)                                                                                     <---------ALFIN1                                                                                    --------->LBD16                                                                                   --------->RAP2.3(2)                                                                                   --------->RAP2.3(3)                                                                                   --------->ANAC58                                                                                   --------->ANAC46                                                                                   --------->ANAC58                                                                                   --------->RRTF1(2)                                                                                  --------->ATERF1(1)                                                                                  --------->RAP2.3(1)                                                                                  <------NtERF2                                                                                 --------->At4g35610                                                                                 <---------At4g35610                                                                                --------->ARR14(2)                                                                     --------->At4g35610                                  <-------TEIL                       <---------At4g35610                                 --------->ARR14(1)        <<<<<<<<<<<<<<<<<LFY <---------ARR14(2)      <---------GLK1(1)         <---------GLK1(2)    --------->ZAT2  <---------ZAT2--------->RAP2.6(2)    --------->ATHB12            --------->ARR14(2)   <---------At4g35610    <---------LBD16      ---- -----WRKY18(1)              --------->YAB1          <---------ZAT2  <------NtERF2--------->RRTF1(1) ---WOX13(1)     <----------DOF2<---------ARR14(2)   --------->At4g35610   ----------->RAV1(2)   <---   acccattgatttctcaactctttctcagtaatcagattcgattttgtttagtctcagctcagaacaatggcagctaaacctggagccgcaactccaacgt  13740000                                                                                                  ---                                                                                              -------                                                                                              <------                                                                                             ------>NtERF2                               ------>ZmHOX2a(1)         <------MYB46(1)                     <-------                         --------->At4g35610             <------MYB83          <---------ANAC58  ----                         <------NtERF2                  <---------AtMYB61      <---------ANAC58  ----                         <---------At4g35610         --------->ATHB12          <---------ANAC46 <----                        <---------DEAR3(2)    <---------ETT(1)            <---------ANAC58  ---------   --------->TOE2(3)   <---------DEAR3(1)  --------->GLK1(2)              <---------ANAC58  <-------- ----->ARR14(2)        <---------RAP2.6(2)<---------GLK1(2)        ------>ZmHOX2a(1)  --------->AtMYB61 ------ARR14(2)       --------->RAP2.6(3)--------->HSFB2a(1)       --------->ICU4    --------->MYB46(3)   attcacctaaaatcgtcggaagaagtcggcttcctatattcaaagattccgacctcgattggtctcgtcctgatggccgtggcttccaccaatgccgacc  13740100                                                                          <---------At4g35610 ----------->GT1                                                       <-------TEIL ------>LBD16                                                      <------MYB46(1) -->ARR14(2)                                                       <------MYB83 ---ARR14(2)                                                    <-------GAMYB --RAP2.6(3)                                                  <---------YAB1 ----->ANAC58                                                 <---------TOE2(3) ----->ANAC58                                                <---------At5g28300 -----LBD16                           <---------MYB52(1)    --------->MYB52(1) >DEAR3(1)            ------>ZmHOX2a(1)  <---------TOE1(3)  <-----------GT1                        <- -ETT(1)     <----------DOF2  --------->TOE2(3)  --------->ATHB12<--------P          <---------MYB52(1)   cgcatgtaaaaacacctttgattcctctaaattcttaatcgttagggttcttcattgtgaaattacggttggattcatatgactccagttatttgtgaga  13740200                                                              <---------ANAC46            <---------At4g35610                                                            <---------At4g35610     <---------At4g35610                                                            <---------ZAT14     <---------ARR14(2)                      <----------DOF2      --------------->AtSPL8       <---------At4g35610 --------ZAT14    ---------->ID1        <----------DOF2 <-----------RAV1(1)     --------->ARR14(2)   ctaaactagatttgaattttgtttcttttgtgaaaaatgcttctttcagtacttcaaactggtgctgtgagttctgcttctggttctgcttatgctgagt  13740300  Previous    Next  AGI:  At4g27490.1    Description:  3' exoribonuclease family domain 1-containing protein. similar to RRP41 (Ribosomal RNA Processing 41) [Arabidopsis thaliana] (TAIR:AT3G61620.2); similar to RRP41 (Ribosomal RNA Processing 41), 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana] (TAIR:AT3G61620.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96391.1); contains InterPro domain Exoribonuclease, phosphorolytic domain 1; (InterPro:IPR001247); contains InterPro domain Exoribonuclease, phosphorolytic domain 2; (InterPro:IPR015847) Range:  from: 13739812    to: 13741809    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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