Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <---------YAB1                                                <---------At4g35610                    <---------TOE1(2)                                           <--------P                      <---------AHL20(2)                               --------->DAG2<------MYB83                 --------->AHL20(2)                              ---------->DOF2<------MYB46(1)              <---------AHL20(2)                  <---------YAB1          <-------GAMYB                --------->AHL20(2)                 <-----------GT1      --------->ALFIN1<----------DOF2  <---------AHL20(2)              ------->TEIL --------->YAB1<---------ANAC46            <---------AHL20(2)<---------TOE2(2)   tagaccatctccaatgtattttcattctaaaataaagtaagtggggttggagatgtctttagtcttgctatatttttttaatagcttcttatgtttatta  13734600                 ----------->GT1          <---------ANAC58       --------->YAB1                     <---------ANAC58      <---------YAB1                     <---------STY1(2)      --------->CCA1(2)      --------->ICU4               <---------ZAT18           --------->DAG2  ------->TEIL--------->ALFIN1    <---------ZAT6           ---------->DOF2   catgtaccatgatgaagtgttgtaaacttgatgctagtgttcttgctaggctagggctatggaaaggtatgaaaaactttagaatgaacaagcttatttt  13734700                  --------->ATHB12              <---------ARR11(3)              --------->ARR11(3)                                                               ------            ----------->ARR10                  ----------->GT1                                <------       <------ZmHOX2a(1)                 ------->MYC3                                         ------- --------->ZAT2  <---------AHL20(2)      <-------MYC3                        <---------TOE2(3)------- <---------At4g35610                  ----------->RAV1(1)         --------->AHL20(2)         -------- --------->At4g35610      <---------AtMYB61--------->ATHB12       <---------AHL20(2)         <------- <---------ZAT2  --------->AHL20(2) ------>NtERF2                --------->YAB1              <-------   ctcagctaaggacgaagattttattggtgaggttttgaggccacatgtttggaaaaatgaaatctaattttaatcggctaagataaatgtagtaatcctc  13734800                                             --------->MYB46(3) >ZmHOX2a(1)                           --------->YAB1                                       <-------- ---------AGL15                 <---------ARR11(3)                      ----------->RAV1(1) <-------- -------->AGL15               ----------->ARR10                        <---------ETT(1)    --------->ARR11(3) -->TOE2(3)                   <---------TOE2(3)                <----------DOF2             <---------ARR14(2) --------->AGL1    --------->AHL20(2) >>>>>>>>>MYB98        <-----------GT1                <---------ARR11(3) ----------AG      <---------AHL20(2)<-----------GT1       <-----------GT1       <---------MYB46(3) - ----------AGL1   --------->YAB1--------->ARR11(3)      <---------ZAT6 --------->ANAC46  ----------->ARR10   atttggaaaatgaaatctaattttaatcggctaagattttaacataatccaccgagtagttttaacttttaatccgacattagtggatgggaagatattt  13734900                                                                              <------------CBF                                                                             -------->HAHB4                                                                             <---------ICU4                                                                             --------->ATHB12                                                                             <--------ATHB1                                                                            --------->ICU4                                                                            --------->AHL20(2)                                                                            <---------ATHB51                                                                            <---------YAB1                                                                            <---------AHL20(2)                                                                           <---------AHL20(1)                                                                          --------->YAB1                                                  <---------MYB52(1)    --------->AHL20(2)                                                 <-------GAMYB          <---------AHL20(2)                                                <---------MYB46(3)  <---------YAB1                     <-----------GT1         --------->DEAR3(1)    --------->AHL20(1)                   <---------YAB1           --------->DEAR3(2)     <---------AHL20(1)                 <---------ICU4             --------->MYB46(3)     <---------AHL20(2)                 --------->AHL20(2)        ------>NtERF2           --------->AHL20(2)                 <--------HAHB4           <---------ALFIN1    --------->AHL20(2)                 -------->ATHB1          <------NtERF2        <---------ARR11(3)                 --------->ATHB51        <---------ABI4(2)    --------->ARR11(3)                --------->ICU4           <---------MYB55(2)   <---------AHL20(2)                <---------ATHB12         --------->MYB46(3)   <---------AHL20(1) -CCA1(1)       <---------ATHB51        ------>NtERF2         --------->AHL20(1)    ---------->DOF2 < -RVE1(1)   ------------>CBF           --------->RAP2.3(3)   --------->AHL20(2)<---------WOX13(1)  -- -------->CCA1(2)--------->YAB1        --------->PCF2      --------->AHL20(2)--------->ATHB51      --   agatagaggcattatccaattattaacaaaacaaaaaactgcccccaccgtcgttgtctaaaaatatattatattaaaataattggcaaagacgaagacg  13735000                                                                 --------->ANAC46                                                                <-------TEIL              <---------MYB52(1)                              <---------ARR14(2)             --------->LBD16                                  --------->ARR14(2)        <---------At4g35610                            ------->MYC2        --------->At4g35610 <-----------GT1            <-------MYC3     *TSS    <-----------HVH21 <---------DAG2          <-------MYC2            --------->ARR11(3) ---------ALFIN1       <----------DOF2                 ------->MYC3            <---------ARR11(3) ------->HSFC1(2)    ---------->ID1                  <---------TOE2(2)      <-----------GT1 ------->MYB46(3)<---------MYB52(1)                  <---------TOE1(2)  <----------DOF2       -------   aagcaccctcatctccgtcgtttgtctttaaaaccttttgccattaccatcttcgcacgttgaatatacgtcgactttaaacatcttccaatctctgaaa  13735100                                                  --------->HSFB2a(1)                                                  <------MYB46(1)                                                  <---------HSFB2a(1)                                                  <------MYB83                                                  <---------HSFC1(2)                                                  --------->HSFC1(2)                                                 --------->MYB111(1)                                                <---------MYB55(1)                                         <---------DEAR3(2)                               --------->ARR14(2)--------->MYB46(2)                               <---------ARR14(2)--------->MYB59                  <---------ANAC58     <------NtERF2 <-------TEIL                  <---------ANAC58    <-----------HVH21       <---------At4g35610      <----------DOF2       --------->YAB1      <--------P    <---------CCA1(2) <---------ALFIN1 <---------ANAC46   <---------DEAR3(1) <<<<<<<<<TBF1                            ---- --->DOF2 <-----------GT1--------->REM1(1)     <---------MYB52(1)      --------->ATHB12<---------GLK1(2)   gcccctctcttttctccatttcgtgcttcatcatattcgtcgtcgcttcggtaggttcttcttcatctctcttcgattggattggattggattctatttg  13735200                         <---------ANAC46                         <---------ANAC55(2)                         <---------ANAC58                       ------>ZmHOX2a(2)                   --------->WRKY38(1)                   --------->WRKY12                 <-------GAMYB                <---------MYB46(3)                --------->MYB52(2)      --------->AHL20(2)               <-------TEIL           <---------GLK1(2)            <---------DEAR3(2)    <---------At4g35610            <---------MYB46(3)   --------->MYB52(1)                                  --------->HSFB2a(2)            --------->MYB55(2)  <---------WRKY12                      --------->At4g35610            <------MYB46(1)     <---------WRKY38(1)          <-----------GT1         <---------HSFB2a(2)        <-----------RAV1(1)   <-----------HVH21           <---------DAG2             --------->HSFC1(1)        <---------MYB46(3)  --------->SPL7       <---------TCP20      ----------->RAV1(2)     <-----------RAV1(1) --------->ANAC55(2)  <---------TOE1(3)       <---------At4g35610 ------->GT1<------MYB83 <---------ANAC58     <---------TOE2(3)    <-------TEIL     <---------LBD16   agtaaatttgttgttggttcgttgatcgcgtatgtcaacggattatttagggttccaccaatttttcgattcatctgtgctagtcttctggaatttgaaa  13735300                                                                 <---------At4g35610                                                                <---------YAB1                                                              <---------ICU4                                                              --------->YAB1                                                             <---------ATHB51                                                         <------NtERF2                                                       --------->ATERF1(2)                                                       <---------ATERF1(2)                                                      <---------ANAC58                                                      <---------ANAC58 ------>ZmHOX2a(2)                                         --------->LBD16------>NtERF2--------->ARR11(3)                                        <---------ANAC55(2)  --------->ICU4                                        --------->ANAC55(2)  <---------ATHB12                          <---------GLK1(1)          <---------At4g35610   <---------GLK1(2)    <----                          --------->GLK1(1)  --------->ICU4--------->WOX13(1)       <---------YAB1   aatgggaattggatgggtttgaaattggaattctagtttctcccgtattgatttttgctggcaattatgctgatctagattgttttcttatagctggatt  13735400                            <----------DOF2                   --------->ANAC58           --------->WRKY38(1)                   --------->ANAC46         --------->CCA1(2)         <---------GLK1(1)          <---                   --------->ANAC58      <---------TOE2(3)    --------->ARR11(3)                 ----               --------->GLK1(2)     <---------ANAC58         <---------AHL20(1)                <---- -----MYB46(3)<---------GLK1(2)      <---------ANAC58      ----------->GT1<---------AHL20(2) <-------   gttgttttgcatatgagattctcgcaatctctttgaattgcttaagatttgaccacaagtctagtatattggatatttgatttttgtaatgttctctgat  13735500  Previous    Next  AGI:  At4g27470.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to RMA1 (Ring finger protein with Membrane Anchor 1), protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G03510.2); similar to RMA1 (Ring finger protein with Membrane Anchor 1), protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G03510.1); similar to unknown [Populus trichocarpa] (GB:ABK94075.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 13735005    to: 13736524    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version