Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <---------ANAC58                                                                   <---------ANAC58                                                                   ----------->GT1                                                           <---------ANAC46      ----------->GT1         ----------->HVH21                 <---------TOE2(3)       <---------ANAC55(2) ---------TOE2(3)     ---------->DOF2      <---------TOE1(3)       <---------ANAC46                >> ----------GT1  ----------->HVH21 --------->ATHB12 <---------At4g35610          <-------TEIL      ---   ttgacgattttgtgacatatgacataatgctcttattcattgaataaggtttgagctattctcgtgaatgcgtaaattcaaattcgtataatgcatactt  13725200         --------->ICU4                             <-------TEIL    ----------->GT1                       --------->TOE1(2)           --------->ANAC46 >>>>>>>WRKY18      <-----------GT1      --------->YAB1               --------->ANAC58 -------->HVH21    <---------YAB1       <---------ATHB12              --------->ANAC58       ------>ZmHOX2a(1)   ttgacagagtaacaattgtttattactggagaaacttatccaaacatgagaacgtccataacaactagtagcaagcaactagctctatctatctccttct  13725300                                              ------>MYB83                                              ------>MYB46(1)                                            <---------ALFIN1                                         --------->YAB1                                        <---------ATHB12                                      --------->WOX13(1)                                    --------->At4g35610                                  --------->YAB1    --------->ATHB12                                 <---------ATHB12 <----------DOF2                                ------>MYB46(1) --------------->AGL15     ---------->DOF2            ------>MYB83--------->AtMYB61                               --------- --------->ANAC58              --------->WOX13(1) <---------DAG2    <---------MYB52(1) ----------->GT1 --------->ANAC58      <---------ATHB12 --------->MYB46(3) <---------At4g35610    --------->AHL20(2)   cccatgccaaagggtatggaatcccatcaacaccaatcagcaatcaccatccctttattgcaactgttccatttgttaacccaaaaaaatagtttaaaga  13725400                                                                         <---------ARR14(2)                                                                         --------->ARR14(2)                                                                         <---------GLK1(2)                                                                        <---------At4g35610                                                                   --------->ALFIN1                  <------ZmHOX2a(1)                                ----------->HVH21                <---------TOE2(3)                                --------->O2           <---------ARR11(3)                                    <---------ANAC58           --------->ARR11(3)                                    <---------ANAC58          --------->CCA1(1)                                      <---------O2      --------->AHL20(1)                                         <---------ANAC46      <---------AHL20(2)                                         --------->TGA1a      --------->AHL20(2)                                         <---------bZIP60(2)                < <---------AHL20(2)       <---------GLK1(1)  --------->ATHB12    <---------TGA1a                    - --------->AHL20(2)       --------->GLK1(1) <---------YAB1     ------>NtERF2           --------->ARR11(3) ->DOF2   --------->RVE1(1)             <---------GLK1(2)     --------->DEAR3(1)       <---------ARR11(3)   cattaaaataaaatatctaaggagaaggaaatctaattctcaaattctcattggatattaaacgacgacgtggcagatacttagttcaagataatgctat  13725500                        <---------PCF5                       <---------PCF2              ----------------->AGL1           ----------->HVH21 ------>MYB83                                                    --------           --------->WRKY38(1)<---------ATHB12 <---------ARR11(3)       ------->TEIL         --------          <-----------HVH21  ------>MYB46(1)   --------->ARR11(3)    --------->ANAC58        <-------        <---------DEAR3(1)------------>CBF     <-----------ARR10     --------->ANAC58       --------- ---------ALFIN1    --------->ALFIN1<----------DOF2 *TSS  <---------------AtSPL8            --------- -------->ANAC46  <-----------RAV1(1)         <---------CCA1(2)    ---------->DOF2<----------DOF2   ccacacatcttcggtgacctctgtggggaccaatcttcctttgtccgaatatctcatttgctagtacataaacgcacatactctctttcgcaaaatatcc  13725600                                               ------>MYB46(1) <---------YAB1                               <<<<<<<<<<<<<<<<<LFY    <----------DOF2 ->ARR11(3)                     <----------DOF2------>MYB83   <---------ZAT2 ->ARR14(2)          --------->YAB1         <-----------------AGL1 <----------DOF2 --ARR14(2)         <---------ATHB12   --------->HSFB2a(2) ---------->DOF2      ------>ZmHOX2a(1) >CCA1(1)         --------->WOX13(1)   <---------HSFB2a(2)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --- >RVE1(1)       <---------At4g35610    <---------------AtSPL8 <---------At4g35610    <----------DOF2   actacgatagttttcttcagcaatcacactctctctttgttcgagtaccaacaatggcccttcaagctgcttctttggtctcctctgctttctctgttcg  13725700                                                                        ------>MYB83                                                                   --------->ORA47(1)                                                                  --------->MYB46(3)        ------>ZmHOX2a(2)                                                          ------>NtERF2 ------>MYB46(1)   --------->ARR11(3)                                                        --------->ATERF1(1)   --------->ARR14(2)                                                       <---------ATERF1(1)    <---------ARR14(2) ----                                                    <---------ANAC58  --------->AtMYB61   <---------ARR11(3)                                                    <---------ANAC58------>MYB83          --------->ARR14(2)                                                   <-----------RAV1(1)<---------MYB59     <---------ARR14(2)                                     <------ZmHOX2a(1) ------>NtERF2------>MYB46(1)       ------->TEIL ------->DOF2                 <----------DOF2  <----------DOF2   --------->DEAR3(2)      <---------CCA1(2)   caaagatgcgaagttgaatgcttcttcatcatctttcaaggactcgagtctttttggtgcctccattaccgaccaaatcaaatccgaacatggatcttcc  13725800          <---------TOE2(3)          <---------------AtSPL8                                    <--------P       <-------TEIL                                               <---------MYB46(3)      --------->CCA1(2)                       --------->REM1(2)   ----------->GT1   <---------TOE1(3)                          <---------ZAT14<---------ANAC58   <---------YAB1                             --------->ZAT14<---------ANAC58       <---------AHL20(2)   <---------TOE2(3)   --------->ARR14(2)<---------ZAT14--------->ARR14(2)         <---------WOX13(1) -->ZmHOX2a(1)<-------TEIL               --------->ZAT14<---------ARR14(2)   ----------->GT1        <   tcgttaagattcaaggtacagaacaaatctacatttctaccattacagtgtagattagtatttgcgaatggttagtaaatggttaattgattatgcagag  13725900                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                             <------NtERF2                                                                           --------->ANAC58                                                                           <---------DEAR3(1)                                                                           --------->ANAC58                                                                          <---------ORA47(1)                                                                          --------->RAP2.6(3)                                                                      --------->LBD16                                                                     <---------ANAC58                                                 --------->ANAC58    <---------ANAC46                                               ---------->DOF2       <---------ANAC58                                        ------>NtERF2               <-----------------------TaNAC69(2)              --------->GLK1(2)      --------->At4g35610          --------->ARR14(2)                <            <------ZmHOX2a(1)        <---------At4g35610          --------->GLK1(2)           -------          <---------TOE2(3)        --------->MYB46(3)    <---------ZAT6   --------->SPL7      =======          <---------TOE1(3)      <---------ALFIN1--------->ANAC58 <---------ARR14(2)         <------ZmHOX2a(1) ---------ZAT14                  --------->ARR14(2)      ----------->GT1--------->WRKY12   <---------TOE2(3)   agaacagagcttaaggaatctagcaattcgagcccaaaccgctgcgacttcaagccctacagttacaaaatccgtggacggcaagaaaacgttgaggaaa  13726000                                 <------MYB46(1)                                 <------MYB83                                <---------AtMYB61                                          <---------ZAT14                                --------->MYB59                                            --------->REM1(2)                                --------->MYB46(2)                                         --------->ZAT14                              <---------MYB52(1)         --------->ZAT2                   --------->ALFIN1                      --------->O2         --------->ANAC58                             <---------ANAC46                      --------->TGA1a --------->ANAC58   <---------At4g35610            <---------ANAC58        <---------MYB46(3)    <<<<<<<<<MYB98        --------->ARR11(3)                  <---------ANAC58       <---------AtMYB61----------->RAV1(2)--------->ANAC58  ----------->HVH21     <---------ICU4    --------->ALFIN1  =====================================bZIP_DOF               <---------YAB1 ---------GLK1(1)  --------->ATERF1(1)--------->ANAC58   <---------ZAT2           --------->ICU4 --->DOF2<-----------HVH21   <-----------HVH21  ---------->DOF2              --------->ANAC55(2) ===============================bZIP_DOF  <---------LBD16--------->At4g35610 ----------->GT1   ggaaatgtggtggtcactggagcctcgtctgggttaggtctagccacggctaaagctctagctgagacagggaaatggaacgtgataatggcgtgcagag  13726100  Previous    Next  AGI:  At4g27435.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15480.1); similar to fiber protein Fb34 [Gossypium barbadense] (GB:AAR07596.1); contains InterPro domain Protein of unknown function DUF1218 (InterPro:IPR009606) Range:  from: 13723800    to: 13725143    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g27440.1    Description:  PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B); oxidoreductase/ protochlorophyllide reductase. Identical to Protochlorophyllide reductase B, chloroplast precursor (PORB) [Arabidopsis Thaliana] (GB:P21218;GB:Q42537); similar to PORA (Protochlorophyllide reductase A), oxidoreductase/ protochlorophyllide reductase [Arabidopsis thaliana] (TAIR:AT5G54190.1); similar to NADPH:protochlorophyllide oxidoreductase [Nicotiana tabacum] (GB:BAB93003.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; Range:  from: 13725552    to: 13727359    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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