Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->HSFB2a(2)           <---------HSFB2a(2)        --------->GLK1(2)       <---------GLK1(2)                    --------->ARR14(2)                                   <---       --------->ARR14(2)           <------NtERF2                  ----------->GT1            -------       <---------ARR14(2)        <---------LBD16                --------->TOE2(3)             <------     ----------->ARR10       ------>ZmHOX2a(1)         --------->TOE2(3)             --------->YAB1 ------->ANAC46   --------->ANAC58 ------>NtERF2     <---------ARR11(3)            --------->AtLEC2 -------LBD16     --------->ANAC58 --------->LBD16  --------->GLK1(1)     <-------TEIL ---------->DOF2   cacggagacgattctcgagcgcgaaacaatccttcgccgggactcgaatcgccgaaatctcaaaaaccctagtaaattcatcttcattcaaaagaacatc  13690100          <-------TEIL -------DOF2                                                               <---------ARR11(3) -->ARR11(3)                   <-----------------AGL1                      --------->ARR11(3)      <- ---ARR11(3)                   ----------------->AGL1           <---------At4g35610           <------   tttctcaattgattcatcaaactctccaattttgcctcgatgggcatctctgtctcgaccaattgaagctaatctaatatcatctagcacaggcttcttt  13690200                               <---------ANAC46                             <---------MYB46(3)                            <---------AtMYB61                            <---------DEAR3(1)                    <---------ANAC55(2)                    --------->ANAC46                    --------->ANAC55(1)                    --------->ANAC58                    --------->ANAC58                   --------->SPL7 <---------ANAC46                  --------->MYB52(1)<------ZmHOX2a(1)                     <---------TOE1(3)    ------    <---------At4g35610  <---------AtMYB61                                <---------TOE2(3)    <-----  <---------HSFB2a(2)    --------->DAG2                          --------->MYB52(1)           -------  --------->HSFB2a(2)  ---------->DOF2                          --------->CCA1(2)            <------- ---------DOF2   <---------SPL7--------->ALFIN1                --------->ARR11(3)            <------- ----DOF2--------->CCA1(2)  --------->ALFIN1      XXXXXXXXXXXXXXXXXXXX>MIR835-3P   <---------ARR14(2)   cctttcagaagagacgggccatacggaaaggtggtggaggagagattactggagaagacacagaagataagggttttaggtttgggatagggtttaagga  13690300                                                                                                    -      <XXXXXXXXXXXXXXXXXXXXXMIR831 ----------->GT1       ---------->DOF2                         <---     --------->ZAT2           --------->DAG2       ---------->DOF2                      <---------ZAT2 --->YAB1                    ---------->DOF2   --------->ANAC58                         <---------At4g35610 -ZmHOX2a(1)         ----------->HVH21         --------->ANAC58                         --------->At4g35610 ---->GT1          --------->CCA1(2) <XXXXXXXXXXXXXXXXXXXXMIR3440B-5P                   --------->ZAT2 --TOE1(3)         --------->At4g35610       <---------ANAC46   ----------->HVH21   --------->ANAC46< --TOE2(3)    <------ZmHOX2a(1) XXXXXXXXXXXXXXXXXXXX>MIR417   <----------DOF2<---------YAB1   ------>ZmHOX2a(1)   taaaacgagcagagtaggaagagatgactggaaaaggaagtgaattggctcggaaaagagaaagctttgacaccattttctgattcactcagcttcctga  13690400                                         <----------DOF2                                       <---------TOE1(2)          <---------AtMYB61            --------->LBD16 -------->ARR14(2)                    --------->LBD16                                          ------ ------WOX13(1)                      <---------LBD16---------->DOF2        *TSS           ----------- ---------ARR14(2)                  <---------At5g28300         <---------LBD16   --------->GLK1(1)   tggatttgggttttggtgttgggacaatgaaggtcatttcccgcgtttgtgcatcaaaggtattactcagggagcatattagagatttcatcggcaataa  13690500                                                ------>ZmHOX2a(1)                                       --------->AHL20(2)                                       --------->AHL20(1)                 <---------ATHB12                                       <---------AHL20(1)             ------------>CBF                                       <---------AHL20(2)      --------->O2                                      --------->AHL20(2)       <---------O2                   <------                                      <---------AHL20(2)       --------->bZIP60(1)           --------   ------->TEIL           <---------AHL20(2)   --------->TOE2(3)   <---------DEAR3(2)        <------- --->YAB1                --------->AHL20(2)  <---------YAB1    <---------bZIP60(1) <-----------HVH21 ->CBF           <----------DOF2    --------->YAB1          --------->ANAC46      <----------ID1   gaacgaacatatcactctgctttcagatttattttcaaaaataaattatcctaaaattttaaacgacgtcgtttcaataactaagcgtcaaaacgatgtc  13690600                                                 <---------TOE2(3)                                                 <---------TOE1(3)                      --------->TOE2(3) -----HVH21                            ---------->DOF2                               ----------->RAV1(1) ->bZIP60(1)                         --------->AHL20(2)                         ------->TEIL     <--- --bZIP60(1)                         --------->YAB1        --------->ANAC46  --------->AtLEC2 -------   acattgacatcccaactagactgtttacaaaaaaaacaataaaaagggtttagggttttataaacaactagactgtttcatgcatcccaacatttatcag  13690700       <---------ANAC46       <---------ANAC58       <---------ANAC58      <-------TEIL                                   ================================================     --------->CCA1(2)                               --------->TOE2(3)    --------->ARR11(1)                     --------->DAG2    <---------GLK1(2)                     ---------->DOF2 ---------->DOF2    --------->ARR14(2)                ===============================MADS_MADS    <---------ARR14(2)           <---------WOX13(1)  --------------->AGL15  ----------->ARR10           <---------YAB1         <---------------AGL15                        <-- ---ZmHOX2a(1)      <----------DOF2   --------------->AGL15                                       --- -->YAB1<---------LBD16       --------->ICU4  ----------->GT1                                    ----   gaccaagattcgtggaatggaactttgacatactgattaactaaaaaagggtttaacttaaaaagaaatcaaatgaagtagcatgagaagagaaaggtta  13690800                                                  ----------->GT1          ----------->GT1                         <---------TOE2(3)                            ------        --------->At4g35610                <---------------AGL15            --------->ZAT6     <----- ==========================================================MADS_MADS      <-----------GT1      ------ ----ZmHOX2a(1)                            --------------->AGL15         <---------YAB1        <----- ------>YAB1                        --------->TOE2(3)            <---------ALFIN1  ---------->DOF2 ------->GT1                        --------->TOE1(3)  <---------YAB1  --------->YAB1       ---------   ggataatatgagttgaaataaaaacaaattagaagaaaccttaaaccctattaagttataagtagtcacacatttataactgtacaaaagcagagtggaa  13690900                --------->YAB1       <---------ICU4      <---------YAB1    --------->ATHB12    --------->YAB1    <---------ICU4                             <----------DOF2                                      <   <---------ATHB12                    ------>ZmHOX2a(2)                                      -------   --------->ICU4                     <------ZmHOX2a(2)                                       <------ --->TCP20    --------->ANAC58       <---------ARR14(2)                                       ------- ----ARR14(2) --------->ANAC58       --------->ARR14(2)                                     <-------- --->ARR14(2) --------->ANAC46       <---------ARR11(3)         --------->ARR11(3)   <-----------ARR10 ----PCF2 --------->YAB1             --------->ARR11(3)         <---------ARR11(3)  <---------CCA1(2) >ALFIN1 <---------YAB1          ---------->DOF2    <----------DOF2          --------->AHL20(2)     -   cccgaatgattatcacaagcaaaatatggacgatacaaagatcggttttcttttctttatttttcagatattagggaaattaactcaaatctcatcaggt  13691000  Previous    Next  AGI:  At4g27340.1    Description:  Met-10+ like family protein. similar to Met-10+ like family protein [Arabidopsis thaliana] (TAIR:AT3G56120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39182.1); contains InterPro domain Protein of unknown function Met10 (InterPro:IPR003402) Range:  from: 13687202    to: 13690475    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g27350.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G54240.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39196.1); contains InterPro domain Protein of unknown function DUF1223 (InterPro:IPR010634) Range:  from: 13690827    to: 13692802    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version