Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        ------>MYB83      ------>MYB46(1)     ----------->HVH21   <---------ANAC58   <---------ANAC58   <---------At4g35610   --------->At4g35610                        <----------DOF2   <---------bZIP60(2)                       <---------DAG2 ---------->HVH21                         <---------ALFIN1                   ----------->HVH21 ---->MYB46(3)                           <---------At4g35610               --------->O2 >MYB46(1)                        ------->GAMYB    ------>ZmHOX2a(1)       --------->ANAC46 --->ANAC58                    ----------->RAV1(1)<---------MYB59        <---------ALFIN1 >MYB83                 --------->ANAC46 --------->At4g35610          <-----------GT1       <-------- --->ANAC58          --------->REM1(1)--------->At4g35610     <---------At4g35610           ---------   cactgacctgccagagtatggcttcaacaccatcaacagaagcagcacctttcctaatctcttgagctaatttctccacatgaccatacattgagtagta  13662900                                                 --------->AHL20(2)                                       <---------At4g35610                               <---------ATHB12  <---------AHL20(2)                      --------->GLK1(1)             ------>MYB46(1)<---------ALFIN1  --------->TOE2(3)                    ----------->RAV1(1)             ------>MYB83  <------NtERF2   <---------ALFIN1                     --------->ANAC58      --------->ANAC46    ------>NtERF2--------->At4g35610                      --------->ANAC58 -------AtSPL8        XXXXXXXXXXXXXXXXXXXX>MIR4227                        <---------TOE2(3)    <----- ------>AtSPL8    <---------YAB1      ------->TEIL           --------->ANAC46 ---------->DOF2  <-----   cctattacactcaccaaattgtcaatggcaccactcactgcatctccacattaaaatccaaacccatcacaaaattaaggcaaagcaacacaaatccatg  13663000                            --------->AtMYB61                    <---------YAB1                   --------->AHL20(1)                   --------->AHL20(2)                              --------->ZAT14                   <---------AHL20(1)                              <---------ZAT14       ----------->RAV1(1)                   <---------AHL20(2)                            --------->ANAC46      --------->At4g35610       <---------YAB1    <-----------GT1              <---------ZAT14              --------->ARR11(3) <---------YAB1   --------->AHL20(2)                  --------->ZAT14        --------------------->WRI1 ----YAB1         --------->YAB1                      <---------ZAT18        <----------DOF2      <<< ----ATHB12 --------->YAB1 --------->MYB46(3)    <---------At5g28300<---------ALFIN1<------ZmHOX2a(2)   attctaattacaaatgacaattatattaaaccacagcgaaaatcatcgattcacagtgaacaagtatacaacactgcgactttgagatcagcgacaatga  13663100                                                                                <---------At4g35610                                                                                --------->ZAT2      -                   ---------->DOF2                                              <---------ZAT2<------                  --------->YAB1   <---------ATHB12      <---------LBD16      --------->HSFB2a(2)  <-     --------->ATHB12 <---------At4g35610   <------ZmHOX2a(2)        --------->ICU4   ---------->DOF2 <<<<<<<GATA-1 --------->WOX13(1)--------->WOX13(1)     ------>ZmHOX2a(2)     <---------HSFB2a(2)  --   aatcgagtcatttgagttaatcaaagctgatttttcaatcagtgagatcgatcgatgatcgcgcatttgcaataagtgttcgagcagagaaagaaaacat  13663200                                                                    ----------->HVH21                                                                  ------>ZmHOX2a(1)                                                                  --------->At4g35610                                                               <------ZmHOX2a(2)                                                              --------->ARR14(2)        --------->ARR11(3)                             <---------ZAT18 ---------->RAV1(1)                       <------NtERF2--------->ZAT18 ---ICU4<---------ARR11(3)              --------->ETT(2)      <---------ARR14(2)<---------YAB1 --------YAB1<---------ICU4            ---------->ID1  <---------ZAT14     <----------DOF2          *TSS ------->ANAC46      <-------TEIL   <---------AtMYB61  --------->ZAT14---------->DOF2          XXXXXX   tacgacagaagataattttcacatacactatgtaaactttggtcgccattgaagaagtgcgctcgatcctctgaaagcttttctgatttttgttttcgca  13663300                                                     ------->GAMYB                                                    --------->MYB46(3)                                                    <---------MYB52(2)                                                  <---------DOF5.7(2)        <-----------GT1                                                 <---------WRKY12       <---------AHL20(2)             <------------CBF           --------->GLK1(2)               --------->AHL20(2) <-----------ARR10                  <---------HSFB2a(2)                <---------AHL20(2) <---------ARR11(3)                 --------->HSFB2a(2)             --------->AHL20(2) --------->ARR11(3)           <---------ARR11(3) <---------WRKY45  <---------AHL20(2) --------->GLK1(2)  <---------YAB1  --------->HSFC1(1)             --------->AHL20(2) XXXXXXXXXXXXXX>MIR391   --------->STY1(2)       <---------WRKY38(1)<---------AHL20(2)        <------   gaaaatctagctccaaattgttgttatagctagctcttcgagaatttttagtcaacgacccaaaacttattaatttatatttctgccccttaacttattt  13663400                                                       <---------ARR14(2)                      <-----                                                       <---------ARR11(3)                   ---------                                                       --------->ARR11(3)                   <--------                                                       <-----------ARR10                <---------YAB1              --------->TOE2(3)                        --------->ARR14(2)              --------->AHL20(2)              --------->TOE1(3)                    <---------TOE2(3)                 <---------YAB1           <---------ALFIN1                  ------>ZmHOX2a(1)                     <---------ICU4  <-       ---------->DOF2  ---------->DOF2 <---------At4g35610  <----------DOF2       --------->YAB1----  ------>ZmHOX2a(2) --------->YAB1  --------->STY1(2) <---------CCA1(2)    --------->ICU4--------->YAB1 ---YAB1  --------->MYB46(3)   <---------WRKY18(1)<-----------GT1     --------->AtLEC2--------->YAB1-   ttgatccagtaaaccaccttaattgtaaaagcttgactagatagctcctaattaacatatctccttttattcatggaaagattaagcattataatcaaca  13663500                      --------->ICU4    --------->YAB1    <---------YAB1  --------->At4g35610 ----ALFIN1         --------->YAB1  <---------ZAT18 >YAB1           <------ZmHOX2a(1)  --------->ZAT18                                           <------ -ICU4      <----------DOF2<---------AHL20(2)                                              <--------- --------YAB1  <---------TOE1(3) <---------ANAC46               --------->YAB1          <---------AHL20(2) ----->ANAC46  <---------TOE2(3) <---------ANAC58      <---------YAB1                ------->TEIL -------->ATHB12 --------->YAB1  <---------ANAC58    ----------->GT1              <---------YAB1    <   catcattgatagtgcttaaggatgatgatttttttgtgtgtgctacaaatcgatattgtgatacagtcatcaccagtctagtttatgaatttttttcttt  13663600                                                                                             --------                                          <---------ZAT6                                    <--------                                          ----------->GT1                                   ---------                                        <---------ANAC46               ---------->DOF2     <---------                                      <---------ZAT14             --------->YAB1           <---------                             <---------ARR11(3)                  <---------YAB1        --------->YAB1 ----DOF2                    --------->ARR11(3)                  --------->ICU4 <---------ANAC46 --GT1        <---------ALFIN1--------->CCA1(2)    ----------->GT1--------->ATHB12     ----------->GT1 ---------AHL20(2)<---------At4g35610 --------->ZAT14    <---------------AtSPL8 <---------ANAC55(2)--   attttatatatgttcaacacatctgatcaaagatataaactgaagtgtaaaaatagtatcaagtactatgattaaaagaattatgtgaatggtaacatta  13663700                                                                                         --------->ANAC58                                                                                       --------->REM1(2)                                                                                      ----------->HVH21                                                                                    <---------ANAC46                                                                                    <------NtERF2                                                                                    <---------ANAC58                                                                                   ------>NtERF2                                                                                  <---------ANAC46                                                                                <---------RRTF1(1)                                                                                <---------ATERF1(1)                                                                                <---------DEAR4(2)                                                                                <---------ERF1                                                                                ------>NtERF2                                                                                <---------ORA47(2)                                                                                <---------RAP2.3(1)                                                                                --------->LBD16                                                                               <---------RRTF1(2)                                                                               <---------RRTF1(3)                                                                               <---------DEAR3(1)                                                                      <---------ZAT6<---------ANAC58                                                                  --------->ZAT14<------NtERF2                                                       ------>ZmHOX2a(2)       <---------DREB2C(2)         <---------TOE2(3)                     ===============HOX2a_HOX2a      <---------RAP2.3(3)   --------->ICU4                              ==============HOX2a_HOX2a       <---------ATERF1(2) ->TOE2(3)               <---------ATHB12      <------ZmHOX2a(1)  <---------ZAT14--------->ATERF1(1) -------AGL15        --------->MYB46(3)  ---------->DOF2    <-----------ARR10  --------->ATERF1(2) ------>AGL15   ----------->GT1     <---------AHL20(2)<------ZmHOX2a(2)        <---------RAP2.3(2) --------AGL1  --------->DAG2      <---------AHL20(2)--------->ARR14(2)       <---------LBD16 <------ --------AGL3---------->DOF2       --------->AHL20(2)<---------ARR14(2)<-----------HVH21 --------->ANAC58 --------->GT1--------->DAG2------->TEIL--------->AHL20(2) <---------CCA1(2)  --------->RAP2.6(3)   -   atggaaaaattaagaaaaaggtaacaaatgaatcgaattaaataaaagaggaagggatcccaaatctctccagtgtcaatgccggcgcgtgaagccaaac  13663800  Previous    Next  AGI:  At4g27270.1    Description:  quinone reductase family protein. similar to FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) [Arabidopsis thaliana] (TAIR:AT5G54500.1); similar to unknown [Populus trichocarpa] (GB:ABK94567.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254) Range:  from: 13661337    to: 13663300    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g27280.1    Description:  calcium-binding EF hand family protein. similar to PBP1 (PINOID-BINDING PROTEIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G54490.1); similar to unknown [Populus trichocarpa] (GB:ABK94341.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 13663582    to: 13664246    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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