Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                 ----                                                                                                 ----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                               <---------ANAC55(2)                                             ------                        --------->ARR11(3)               <---------ARR11(3)     --------->ARR11(3) --                        <---------ARR11(3)             <---------TOE2(3)        <---------ARR11(3)<--                     <------ZmHOX2a(1)              --------->MYB46(3)          <-----------ARR10<---          ----------->GT1      --------->ANAC55(2) -------->P  --------->At4g35610  <-----------GT1<-          --------->At4g35610  <---------ANAC46   --------->MYB52(1)           <---------CCA1(2)<----    ------->TEIL  <-----------RAV1(2)           <---------MYB52(2)         ----------->GT1    <------   gctatgaacatgagctaaatacaggagataatcacgtagaacacagacgaactaaccaaggtattagctcaataagagagtatatctcaccattttcgcc  13595200  <--------P <---------MYB52(1) ---------DEAR3(2) ----->ABI4(1) -->NtERF2 -----DEAR3(1) ---->DEAR3(1) ---->RAP2.3(3) ---->RAP2.3(2)                                           *TSS ---->ATERF1(2)                                       <------ZmHOX2a(1) --->ORA47(2)<-----------ARR10                       ----------->GT1 --->ERF1   <------MYB83                           --------->At4g35610 --->DEAR4(2)<---------ARR11(3)                 --------->At4g35610 --->ATERF1(1)                                  --------->ZAT2 --->RAP2.3(1)          --------->LBD16         <---------At4g35610 ------->ATERF1(2) --------->ZAT2               <---------ZAT14           --------->ZAT18 ----NtERF2 <------MYB46(1)<---------ZAT6       <---------ZAT2            <---------ZAT18 ------ATERF1(1)   <---------At4g35610         ----------->RAV1(1)  <------MYB46(1)     --------->YAB1 --------ATERF1(2) <---------ZAT2             <-----------RAV1(2)   <------MYB83<-----------TBP -----ATERF1(2)    --------->At4g35610      ----------->RAV1(1)    --------->MYB59     XXXXXXXXXXXXXX ---RAP2.3(1)--------->ARR11(3)            ----------->HVH21       <---------TOE2(3)<---------AHL20(2)   gccggtagattggaaggtctaagctccgagtgtaaatgtagacgagcgacagcagaggaaaaaatcgattaggttttgcactatatataatcttcattct  13595300                                                            ----------------->AGL1                                                            --------------->AGL15                                                            <---------------AGL15                                                           <-----------------AGL1                                                           ----------------->AGL1              <-----                                                           ----------------->AGL2             <------                                                           <-----------------AG        <------NtERF2                  <---------ARR14(2)                     --------->ANAC46             ------>NtERF2                 <---------CCA1(2)<---------ICU4   --------->TOE2(3)                 <---------ANAC46         <---------ANAC46     <---------AHL20(2)----------->RAV1(1)   ---------->DOF2--------->DEAR3(1)      <---------TOE2(3)       --------->AHL20(2)<---------ALFIN1   ----------->GT1   <---------DEAR3(1)    <---------ANAC46 <----------DOF2     ---------->DOF2 --------->ANAC58       --------->MYB52(1) XXXXXX>MIR2111A/B--------->ARR14(2)    ---------->DOF2  --------->ANAC58 ----------->GT1  <---------   agggttttgtggtttgggcctatctttactaaataaatatcacaaaggcccaacattaaacgcccaatatggtaaagagagaaaacggcgtcgttttatg  13595400                                                                                                   --                                                                                                   --  <---------RVE1(1)                                                               --------->HSFC1(2)  <---------CCA1(1)                                                               <---------HSFB2a(1) <XXXXXXXXXXXXXXXXXXXXMIR865-3P                                     <---------ZAT14    <-------GAMYB ------RAV1(1)                                            --------->AHL20(2)      <---------HSFC1(2)< ---TOE2(3) ----------->GT1                           ----------->GT1   ----------->HVH21 --------->MYB52(2) -DOF2   <---------LBD16---------->DOF2 <----------DOF2----------->GT1  --------->ALFIN1<---------MYB52(1)   ttggatatttttgggggaaaaaaaaaaaaagacacagtgtctctttcatgtggaagaagataaattagagagaagtgatggagaaactccgttatttgtg  13595500                                              --------->LBD16                                       <---------ICU4                                    --------->YAB1                                    <---------ICU4                                   <---------ATHB12                                                --         <------------CBF        --------->WOX13(1)              --------->ANAC58            <------ZmHOX2a(1)    --------->MYB46(3)         ------------>CBF    ---------->DOF2 *TSS                     ---------  ----------->RAV1(1)     --------->ZAT2    <---------LBD16--------->YAB1              --------->ANAC46 ------->ANAC58           <---------ZAT2 --------->At4g35610 --------->CCA1(2) <---------WOX13(1)---- ------->ANAC58           <---------At4g35610<---------HSFB2a(2) --------->ANAC46      ----------->HVH21 ------NtERF2             --------->At4g35610--------->HSFB2a(2) --------->ANAC58  --------->CCA1(2)   gaggcaacaactattgtgtaatgagaccagctcatcaatcatcatctccagaaaaaaggaatgatacaagaaacttagttgatagatagacgacaggaaa  13595600     --------->ANAC58     --------->ANAC46     --------->ANAC58   --------->CCA1(2)  --------->ARR14(2)            --------->GLK1(2)                      <---------PCF2  <---------ARR14(2)        --------->DAG2                        <---------ZAT2 ------->AHL20(2) --------->TOE2(3)                        --------->At4g35610 -->GT1   ---------->DOF2  ---------->DOF2        --------->ANAC46--------->ZAT2           <--------- ----->AHL20(2)   --------->TOE1(3)    <----------DOF2     <---------At4g35610   <---------GLK1(2)   ataatatacgcagaaagaaacctaaaaaaaaaagtttctgtctttagactccaatccactaagctccaagctgggtccccttaaattctcaatctttttc  13595700                                                                          ---------->DOF2                                                                       <------ZmHOX2a(2)                                                                      <---------ARR14(2)                            --------->ATHB12                          --------->ARR14(2)                            <---------ICU4      --------->At4g35610 --------->LBD16                       <---------WOX13(1)     ------>ZmHOX2a(2) --------->SPL7                     --------->ATHB12       <---------ARR11(3)  --------->ATERF1(1)            --------->AHL20(2)       <---------WOX13(1)         --------->PCF5            <---------AHL20(2)     --------->ATHB12            <---------ATERF1(1)    <----------DOF2          <----------DOF2--------->YAB1     --------->ARR11(3) <---------PCF5    ------->TEIL -DOF2   --------->TOE2(3) <---------YAB1 ------>ZmHOX2a(2)   ----------->HVH21 <---------CCA1(2)   tccctaaatttcctttaatttcttcattgatcattgctcattgatcgatcttctgagttttgaggggaccccgatccaaagtgtatctctttctgttttg  13595800                                                                       --------->ZAT2                                                                       <---------At4g35610                                                                       <---------ZAT2                                                                       --------->At4g35610                                                                     <---------ATERF1(2)                                                              <---------ZAT2                                                              --------->At4g35610                                                              --------->ZAT2                                                              <---------At4g35610                                                              --------->TGA1a                                                            ======================RAV                                                            --------->ATERF1(1)                                                            <-----------RAV1(2)                                                         --------->RAP2.3(1)                                                         <------NtERF2----------->RAV1(1)                                                         --------->ATERF1(1)                                 ---------->DOF2        <---------ATERF1(1) --------->GLK1(2)                                 =======================================bZIP_DOF                              --------->LBD16           <---------ORA47(2) <---------GLK1(2)                             <---------LBD16           <---------DEAR3(1)  <---------ARR14(2)                             --------->LBD16      --------->ALFIN1   <-----------RAV1(2)                            <---------LBD16     --------->ALFIN1     --------->ATERF1(2)                           <---------LBD16      <---------O2<------NtERF2  --------->ARR14(2)    ----                   <----------DOF2     <---------YAB1  --------->ALFIN1<------NtERF2       <-------TEIL   ctcagcatttggatttgatttcttttttttcccgggaaagtttgatagagatgtggggaggcgcaggtgagccagcagattcttactaccaagttcgtcc  13595900      --------->DEAR3(1)  <---------ABI4(2)                                                                             <----  --------->ZAT18                  <---------TOE2(3)                                            <----  <---------ZAT18                  <---------TOE1(3)                                 <---------YAB1  <---------ZAT14         <-------TEIL                     <<<<<<<<<TBF1          <---------------AGL15  --------->ZAT14       --------->ARR14(2)         <------ZmHOX2a(2)             <---------ANAC58 -->ZmHOX2a(1)          <---------ARR14(2)   <----------DOF2                     <---------ANAC58<---   tgagtgcaccgatgtccccaagaccagattcaaaatcaaggttacttctttcgatcccttcttcttcattttctccgatttttgcttattctagttttgc  13596000       <------MYB46(1)                         <---------At4g35610       <------MYB83             --------->ARR14(2) <---------ARR14(2)      --------->MYB55(2)        <---------ARR14(2) --------->ARR14(2)      <---------MYB46(3)     <---------YAB1  <---------WOX13(1)    <---------MYB52(1)  <---------ICU4     --------->ATHB12               --------->GLK1(2) -----ANAC58            --------->YAB1    <---------YAB1                 <---------GLK1(2) -----ANAC58            --------->ATHB12<---------ANAC55(2)              --------->ARR14(2) -------DOF2           <---------YAB1   --------->ANAC55(2)              <---------ARR14(2)   ttcttcgttgggtcgtctctgttttatgattacgaatacgatatgtgattgctgattcggttccaattacatccagattctctggttatctatgttttcg  13596100  Previous    Next  AGI:  At4g27090.1    Description:  60S ribosomal protein L14 (RPL14B). Identical to 60S ribosomal protein L14-2 (RPL14B) [Arabidopsis Thaliana] (GB:Q9T043); similar to 60S ribosomal protein L14 (RPL14A) [Arabidopsis thaliana] (TAIR:AT2G20450.1); similar to unknown [Populus trichocarpa] (GB:ABK94606.1); contains InterPro domain Ribosomal protein L14; (InterPro:IPR002784) Range:  from: 13593911    to: 13595258    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g27100.1    Description:  RAB GTPase activator. similar to RAB GTPase activator [Arabidopsis thaliana] (TAIR:AT5G54780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39011.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) Range:  from: 13595567    to: 13598571    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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