Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <           --------->HSFB2a(2)                                                                      -           <---------HSFB2a(2)                                                          <---------ANAC58        --------->ARR11(3)                                                              <---------ANAC46     --------->ANAC55(2)                                                                <---------ANAC58     <---------ANAC55(2)                                                   <---------MYB52(1)     <--  <---------ATHB12                                                       <---------MYB46(3)      ---- -------->WOX13(1)         <---------ZAT14                            ------------>MYB.PH3(2)    <--- ------>ZAT14             --------->ALFIN1     --------->ANAC46 <------------------------ANAC81 <---- -------ZAT14       ---------->DOF2 <----------DOF2          <----------DOF2 --------->MYB52(2) -----   tgcaatcaagtatctcgaagtttaaagagtgtagattactttcattttcacacagtgctatttcttttatgtagtttgttagttctccttgcttatggtc  13588700      ---------->DOF2 <---------ARR14(2) --------->GLK1(2) ---------GLK1(1) -------->GLK1(1)                                         --------->AHL20(2)                     ---- ----NtERF2                                               <---------AHL20(2)                     ---- ----->HSFB2a(2)                                    ------->TEIL<---------AHL20(2)               ---- ------HSFB2a(2)      ----------->GT1           ------->TEIL   --------->YAB1               <-------- -----LBD16       ---------->DOF2            <---------YAB1   --------->AHL20(2)<---------HSFB2a(1) ---->ETT(1)    <------ZmHOX2a(2)       <---------ZAT6--------->YAB1            --------->HSFB2a(1)   gggaatccaaaagtttggatcaaagggttaagaagagaataagtgttatgaatgtatcatataaataaaaatgttctatggaacgtttgatgttcttata  13588800                                             <---------ARR11(3)                                             --------->ARR11(3)                                             <---------ARR11(1)                                       <----------DOF2                                   <-----------GT1     <-----------GT1                           <--- ----->ANAC46              <---------ZAT2   <---------CCA1(2)                            --------->ATHB12 ----->ANAC58              <---------At4g35610 --------->TOE2(3)                        <---------ATHB12 ----->ANAC58              --------->At4g35610 --------->YAB1                       ------>ZmHOX2a(2) -YAB1                     --------->ZAT2 --------->YAB1     <---------ATHB12   <---------YAB1   ----   agcaattcgaactgttttgttcttgacttagctggttttccctttcatatcttaatttcaccaatgcttagaaaaaacaactctgatcgaatgatttata  13588900                      <---------ICU4                      --------->ATHB12                     --------->ICU4                     <---------YAB1          <----------DOF2                              --------->ICU4                         -------      <---------At4g35610----------->GT1         --------------->AtSPL8    --------------->AGL15 --------GT1<---------AHL20(2)                  <---------ANAC46           <---------------AGL15    - ----->ANAC46   --------->YAB1           <---------ANAC46        <---------YAB1   ----------->GT1  <-   aacaactctgctctttaatggtgatcattgtaaattcaaacttgtgtattgtttgtactaatttgttctgatagaaactattttgggttaaatgggaaac  13589000                                                                                               ------                                                                                      <-------TEIL            <---------ZAT18                                                          --------->ALFIN1  ---------->DOF2                                                                  <------MYB83<----- <---------WRKY12                                                                  <------MYB46(1) <---------WRKY38(1)                                                               <---------At4g35610 <---------WRKY45                                                                 <---------DEAR3(1) -->MYB52(1)--------->ZAT18                          <---------ARR14(2)       *TSS<---------AtMYB61 < -------->WRKY18(1)   ----------->GT1       <------ZmHOX2a(1)--------->At4g35610  --------->ALFIN1  - ----------HVH21   <---------ZAT6  <------------CBF  --------->ARR14(2)   --------->YAB1       ------   gggtcaaagcatagggggctagtgttgtaatttagtagattggggaggagtttcaaatctgaacgctgaagataaatcacaagggaggtgcttcgtcctc  13589100                          <---------MYB52(1)                      --------->ZAT2                      <---------At4g35610     <---------HSFB2a(2)<---------MYB46(3)                                   <------ZmHOX2a(2)     --------->HSFB2a(2)<-----------RAV1(1)                                 --------->ARR11(3)  <----------DOF2     --------->At4g35610                                   <---------ARR11(3) --->HSFB2a(2)        <---------ZAT2               ------>NtERF2      --------->ANAC58 ----HSFB2a(2)    --------->AtLEC2                --------->DEAR3(1)  --------->ANAC58 ---------HSFC1(2)--------->ANAC58    <---------ZAT18                <-------PIF5     <---------MYB52(1) -------->HSFC1(2)--------->ANAC58    --------->WRKY38(1)            ------->PIF5--------->ARR14(2) >ZmHOX2a(1)      --------->ANAC46    --------->WRKY12           --------->ZAT18 <---------ARR14(2)   gaagcttttagaacttagccaagcagctgttgtttcttagttgactccctctccgacgaaaatggtgtccacgagcaagatcaaatccgttgatttctat  13589200                                                                                               <-----                                            <---------GLK1(2)                                  <-----                                      <-----------GT1                                          <-----                                   --------->GLK1(1)                                           <-----                                   <---------GLK1(1)                                        ---------                                  <---------GLK1(2)                                        ------->MYC3              <----------DOF2   <---------TOE1(2)      ------>ZmHOX2a(1)                   <-------MYC3          <---------MYB52(1)  <---------LBD16   <----------DOF2                           <---------At4g35610         <-------GAMYB  <---------AHL20(2) <---------At4g35610                            --------->At4g35610        <---------MYB46(3)  <-----------GT1<---------ZAT2                              xxxxxxxxxxxxxx   aggtttatgtctgttactttgtgtatttttttcccagatttctccagcttctttctcctgttatatagatttcgaatttcatcgatctaggcatgtgact  13589300        <---------ZAT6                                                                             <-        <---------AtMYB61                                                                         --- ----ANAC58                                                             <---------ZAT6            <-- ----bZIP60(2)              <-----------GT1            <---------ARR14(2)                     ------- ----ANAC46             ------->TEIL      --------->YAB1            <---------YAB1            ------- ----ANAC58    --------->ZAT14<---------ANAC58         --------->ARR14(2)--------->ATHB12<---------ZAT18 -->HVH21  <--------P<---------YAB1     --------->GLK1(2)         --------->ATHB12       --------->ZAT18 xx>smallRNA(s)<---------ZAT14<---------ANAC58    <---------ANAC46<---------ICU4        <---------ANAC46   tggatttgtagtggtagtttactatgaattttacttggggagaatcaacattttgtggattttcttactcattagtgatagggtttagttgtggacaagc  13589400            <------MYB46(1)            <------MYB83        <---------REM1(1)                                           --------->At4g35610  ------>ZmHOX2a(1)                                          --------->ARR11(3) -----ZmHOX2a(2)                       <---------YAB1      <---------ZAT6 ------>ARR14(2)                 <-------TEIL         ------>ZmHOX2a(2)                 <---------HSFB2a(2) -------ARR14(2) <-----------GT1 --------->ZAT18    <---------ARR11(3)                  --------->HSFB2a(2) -->ANAC58 <---------TOE1(2) ------->TEIL           --------->ARR11(3)      <---------At4g35610     < -->ANAC58<--------P    <---------ANAC46       <----------DOF2      <---------At4g35610<---------LBD16   gatcctgaagttgtaggttttgcctctcgtgtatgtgcattgtcattgtcttttgatcttagtgatattgagctgtttagatgctattttctgggattta  13589500        --------->MYB52(2)      <---------MYB52(1)     <-------GAMYB                                             <---------At4g35610     --------->TOE2(3)                       <---------ANAC58  --------->At4g35610    ------>ZmHOX2a(2)                        <---------ANAC58 --------->GLK1(2)             ---------    <---------MYB46(3)                       <---------ANAC46<---------GLK1(2)        <<<<<<<<<<GATA-1 ---------YAB1              <-----------RAV1(1)  ---------->DOF2          <---------YAB1    ---------   agatgatcgttagtcacttcgatttcggtattgttgctaagagagttgcttcaaagttcaatggaatctgagatttgtgattgtggacgataatacagta  13589600  Previous    Next  AGI:  At4g27070.1    Description:  TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT); tryptophan synthase. Identical to Tryptophan synthase beta chain 2, chloroplast precursor (TSB2) [Arabidopsis Thaliana] (GB:P25269); similar to TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT) [Arabidopsis thaliana] (TAIR:AT5G54810.1); similar to Tryptophan synthase beta chain 2, chloroplast precursor (GB:O50046); similar to unnamed protein product [Vitis vinifera] (GB:CAO38999.1); similar to tryptophan synthase beta subunit [Polygonum tinctorium] (GB:BAD83779.1); contains InterPro domain Pyridoxal phosphate-dependent enzyme, beta subunit; (InterPro:IPR001926); contains InterPro domain Tryptophan synthase, bet Range:  from: 13586346    to: 13588827    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g27080.1    Description:  ATPDIL5-4 (PDI-LIKE 5-4). similar to ATPDIL5-3 (PDI-LIKE 5-3), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT3G20560.1); similar to thioredoxin-related [Arabidopsis thaliana] (TAIR:AT1G50950.1); similar to hypothetical protein OsI_025345 [Oryza sativa (indica cultivar-group)] (GB:EAZ04113.1); similar to hypothetical protein OsJ_023542 [Oryza sativa (japonica cultivar-group)] (GB:EAZ40059.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39008.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain Thior Range:  from: 13589078    to: 13593555    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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