Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <---------TOE2(3)                                             <---------AHL20(2)                                             --------->AHL20(2)                                           <---------YAB1                                          --------->AHL20(1)                                         --------->AHL20(2)                                         <---------AHL20(2)                                         <---------ICU4                                        <---------YAB1                                        --------->ICU4                     <---------ANAC46                                      <---------ICU4                       <---------ANAC58  <---------YAB1                      <--------HAHB4                ------>ZmHOX2a(1) ---------ICU4                        --------->YAB1           <---------GLK1(1)                   -- ------->ICU4                        --------->AHL20(2)        --------->GLK1(1)                  <-- --------YAB1                        --------->ICU4     <---------At4g35610<---------ANAC58     ----- -AtLEC2    --------->CCA1(2)<-------TEIL--------->ATHB51  <------ZmHOX2a(1)            --------->YAB1   catgatggtagtggatataagaaaaaacaaatacatagaataattattttaatgtttcagaggagaaatcctacttggcttgtgccagactcataaccca  13542500                         <---------ZAT14                         --------->ZAT14                              --------------->AGL15               <---------MYB59                                        <---------------AGL15               --------------->AGL15              <---------TOE2(3)<-----------GT1         <---------AHL20(2)               <---------------AGL15  --------->AHL20(2)       <---------AHL20(2)          --------->AHL20(2) ------->YAB1 ----------------->AG    <---------AHL20(2)       --------->AHL20(2)         --------->AHL20(2) -------ATHB12========================================================================MADS_MADS<----- ---->WOX13(1)----------------->AGL3 --------->AHL20(2)  ----------->GT1         ----------->GT1  <--   atcaaaacttcgtattaccaaaataagtgtagttctaaattttattctggtttaggctgtagttataaattactcattttagtttgtgaatataaaatta  13542600                                                              <------MYB46(1)                                                  --------->KAN4(1)                                                  <---------KAN4(1)                                                  <---------HSFC1(2)                                                  --------->HSFB2a(1)                                                  <---------HSFB2a(1)                                                  --------->HSFC1(2)                                          <---------ICU4      <------MYB83                                          -------->ATHB1     <---------AtMYB61                                          --------->ATHB51  <---------MYB52(1)                                         <---------ATHB12 ================================bZIP_DOF                                         <---------ATHB51 --------->TGA1a               <---------GLK1(2)         --------->ICU4   <---------O2             --------->ARR11(3)        --------->WOX13(1) --------->O2                           <---             <---------ARR11(3)    --------->ANAC58       <---------TGA1a                    --------             <---------AHL20(1)    --------->ANAC58--------->KAN4(2)                    --------->AHL20(2)      ---------->DOF2             --------->DAG2 <---------KAN4(2)    <---------At4g35610   <-------- ------GT1--------->AHL20(2)     ===================================bZIP_DOF   <----------DOF2   ---- --------DOF2--------->AHL20(1)  ---------->DOF2 <---------TOE1(2)    --------->At4g35610  --------->AHL20(2)   ctttctgcaaaagaaaatattctcatctttcgacgaaaagccaattattcgaatgttctcacgttggtctgtagctgtaaactttatagtttatataata  13542700                                                                                                <----                                                                                               <-----                                                                                               ------                                                                                             <-------                                                                                            <--------                                                                                           <---------DEAR3(2)                                                                  ------->GAMYB           --------->SPL7                                                               --------->MYB52(1)        <---------MYB52(1)                                                               <---------DOF5.7(2)      <---------SPL7                                                    --------->AHL20(2)                  <-----------HVH21                                          <---------AHL20(2)  <---------WRKY45  --------->YAB1------- ------TOE2(3)                       --------->AHL20(1)       <---------WRKY12 <------ZmHOX2a(2)<---- ->YAB1                  <---------AtLEC2--------->AHL20(2)   <---------WRKY38(1)       <---------RAP2.6(3) -AHL20(2)        --------->AHL20(2)--------->AHL20(2)       <<<<<<<<<WRKY6--------->ALFIN1<---------MYB46(3) ----->DAG2       <---------AHL20(2)--------->YAB1 --------->AHL20(2)  ---------->DOF2 --------->DEAR3(1)   aggtgttctactgttcttatataatttgcaagaacaaataatattaaatgcaaataaaaaatagtcaacggtccaaagtggatcataagccgtccgttcg  13542800                                       >>>>>>>>>>AtbZIP1                                       <---------ANAC58                                       <---------ANAC58                                       <---------ANAC46                                       <---------TGA1a                               <---------HSFB2a(1)                                       <---------bZIP60(1)                           --------->HSFB2a(1)                                       <---------bZIP60(2)                           <------MYB46(1)                                       --------->bZIP60(1)                           --------->HSFC1(2)                                       --------->TGA1a                               <---------HSFC1(2) --------->At4g35610                 <---------TGA2(2)                               <------MYB83 --MYB46(1)                         ----------->HVH21                      --------->ZAT18 ----MYB46(3)          ==========================bZIP_DOF                  <---------ZAT18 --->MYB59             ---------->DOF2 --------->O2                      <---------ZAT18 --MYB52(1)        --------->At5g28300 <---------O2                      --------->ZAT18  --------->HSFB2a(2) -SPL7            ----------->GT1   ----------->TGA1                    --------->ALFIN1  ----------- -->SPL7       --------->MYB52(1) ----------->RAV1(2)<------------CBF <---------ANAC58    <---------HSFB2a(2) --MYB83     --------->MYB46(3) <-----------GT1   >>>>>>>>>>>>>>>>>LFY<---------ANAC58 --------->GLK1(2)   gtcgtctgaacttcatccaacggttaaaagaaatatacctgacgtggccttgggccattgtatattagtagtgagtgtgcccttggaaggttctgtaaaa  13542900                                                                                           <---------CCA1(2)                                                                                       --------->TOE2(3)                                                                            ------>ZmHOX2a(2)                                                                           <------ZmHOX2a(2)                                                                          <---------ARR14(2)                        <---------WRKY18(1)                               --------->ARR14(3)                        *TSS                                              --------->ARR14(2)                     <---------ANAC58                                     <---------ARR11(3) <---------AHL20(2)  <---------ANAC58     <---------CCA1(2)               <---------ARR14(3) >GT1          --------->YAB1 <---------ARR11(3)      <----------DOF2     --------->ARR11(3)---------   tgttttattcgcctctatcagaagcttgacgaaatctcttctccgtctctctctctctttccctcgtccattccacgatcttcttccaatctcaaatctc  13543000                                                                             <------NtERF2--------->ANAC58                                                                            <---------RAP2.6(3)                                                                            ------>NtERF2 --------->ANAC46                                                                           --------->DEAR3(1)                                                                           --------->ATERF1(2)                                                                           <---------ATERF1(2)      -                                                  <---------CCA1(2)        --------->ANAC46------>NtERF2                                     --------->HSFB2a(2)                   --------->RAP2.6(2)      -                                    <---------LBD16                       <---------RAP2.6(2)<-------                                   ------>ZmHOX2a(1)                      ---------->ID1  --------->ANAC58                        ------>ZmHOX2a(1)  <---------GLK1(1)             <---------At5g28300<------NtERF2        <---------ZAT6------>ZmHOX2a(2)    --------->GLK1(1)        --------->ATHB12     ------>NtERF2 >ARR14(2)            ====================HOX2a_HOX2a              <---------YAB1  ------->TEIL   <--   ccattttctagtgtttcattttgatccttcttccttcctctggagatttctcaaatctcttcaactattttgatttgccgccatgtatcgacgcgccact  13543100                                                                                         <-----------HVH21                                                                                        <---------O2                                                                                 <---------At4g35610      <---------ANAC58                                                     --------->At4g35610     --      <---------ANAC58                                                     <---------At4g35610  -----     <-------TEIL        <----------DOF2                                  <---------RAP2.3(1)   -----   <---------SPL7--------->ANAC58                                        <---------RAP2.6(2)<--------  <---------ANAC58   --------->ANAC58                                 <---------ARR14(2)--------->O2  <---------ANAC58   --------->ANAC58          ------>ZmHOX2a(2)      --------->ARR14(2)<---------DEAR3(1)  <---------ANAC46--------->LBD16            --------->ARR14(2) <---------GLK1(2)--------->At4g35610 -------->LBD16  --------->ANAC46            <---------ARR14(2)--------->At4g35610      --------->DEAR3(1) ----->NtERF2    --------->ANAC58         --------->LBD16      <---------At4g35610    <-----------HVH21 --ALFIN1       <---------LBD16          <---------LBD16       --------->ZAT2    ----------->RAV1(2) -------LBD16  ------>NtERF2  <<<<<<<<<TBF1 <------ZmHOX2a(1)  <---------ZAT2------>NtERF2<------NtERF2   tccggcgtgcgttctgcctccgcaaggctttcttcttccctctccaggatcgcctctagcgagacagcttcggtttcggctccatctgcgtcgtcgcttc  13543200                                                                                                =====                                                                                                -----                                                                                              <------                                                                        --------->ABI4(2)     -------          --------->MYB46(3)                                           --------->ALFIN1   <---------LBD16         ------->TEIL                       <----------DOF2          <---------ANAC46    --------->ALFIN1        --------->MYB52(1)             <---------At4g35610          <---------DEAR3(1) --------->At4g35610        <---------ARR14(2)             --------->At4g35610         ------->MYC3        <---------At4g35610  --------->YAB1                  <---------GLK1(1)                <-------MYC3        <---------ZAT2 <---------ATHB12                 --------->GLK1(1)               --------->ANAC46     --------->ZAT2 ------->WOX13(1)             <---------DEAR3(1)                 <---------LBD16     <---------PCF2 ---->ANAC58  ======================HOX2a_HOX2a                 <---------ALFIN1   <---------MYB46(3) ---->ANAC58  <------ZmHOX2a(2)  <-----------ARR10         --------->At4g35610    <---------ANAC46 -DEAR3(2)--------->DEAR3(2) ------>ZmHOX2a(1)             <---------At4g35610    --------->ALFIN1---   gcaatcagacgaaccgatctaagagtttctcctcggctctccgctcctttcgagtttgctctgcttccacgcggtggagccatggtgggagctggggatc  13543300                                                                    <---------ATHB12                                                                    --------->MYB46(3)                                                               --------->ANAC58                                                               --------->ANAC55(2)                                                               --------->ANAC58                                                               --------->ANAC46                                                               --------->ANAC55(1)                                --------->ANAC46               <---------ANAC55(2)                          --------->GLK1(1)                 --------->ARR14(2) --------->ZAT2           <---------GLK1(1)                 <---------ARR14(2)                   <--- <---------ZAT2         <------ZmHOX2a(1)                  --------->GLK1(1)                     <--- ==============================HOX2a_HOX2a             --------->ANAC58                       ------- ->ZmHOX2a(2)      <---------STY1(2)  <---------ARR14(2)   <---------GLK1(1)            <----------DOF2 ---ARR14(2)      --------->ANAC58    --------->ARR14(2)----------->GT1                <---------ANAC58 -->ARR14(2)   --------->WRKY18(1)  --------->LBD16    --------->ANAC58            <---------MYB52(1) -------->RAV1(2) --------->ANAC58<---------LBD16 ----------------------->TaNAC69(2)   <---------ANAC58   gcctgctagccttcgcgctcaagctaggaattccactccggttatggagaaatttgaacggaaatacgcaaccatgggtatgtctgtttgctttctctga  13543400  Previous    Next  AGI:  At4g26965.1    Description:  NADH:ubiquinone oxidoreductase family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO38950.1); contains InterPro domain NADH:ubiquinone oxidoreductase 17.2 kD subunit; (InterPro:IPR007763) Range:  from: 13539648    to: 13542403    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g26970.1    Description:  aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative. Identical to Aconitate hydratase 3, mitochondrial precursor (ACO3) [Arabidopsis Thaliana] (GB:Q94A28;GB:Q9SZ36); similar to aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) [Arabidopsis thaliana] (TAIR:AT4G35830.1); similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT2G05710.1); similar to aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) [Arabidopsis thaliana] (TAIR:AT4G35830.2); similar to unnamed protein product [Vitis vinifera] (GB:C Range:  from: 13542924    to: 13548635    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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