Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <-------TEIL     ------------>CBF   <-------MYC2   ------->MYC2   <-------MYC3   ------->MYC3 ---------ALFIN1 --------REM1(2) -------ALFIN1        --------->AHL20(2) ------ETT(2)        --------->ICU4                                <-------MYC3 ------WRKY38(1)  <---------YAB1                                   ------->MYC3 ------ZAT18  <------------CBF                         --------->ANAC46 ->ANAC46    <---------ICU4          <----------DOF2   --------->ANAC58            ------->TEIL -At5g28300 <---------YAB1 <-----------GT1             --------->ANAC58           <-----------TBP   - --GT1    --------->YAB1  <-----------GT1   --------->YAB1  <------NtERF2   <--------P            <--   ccacacgttcaatactaattgcgattatttatctcttcacttttaatcaaaatttccaaggcagagacacatgtaagggttgatgtatatagtcatcaat  13504900                                                                                                    -                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                 ----                                                                                                 <---                  --------->ATHB12                                                               ----                  <---------ICU4                                                                -----            <---------GLK1(2)                                                                   -----      --------->ATHB12                                                                          -----     <---------YAB1                                                                           <------     --------->ICU4                                         <----------DOF2                 <-------- -------->ANAC46 <---------YAB1      <---------YAB1    <-----------GT1                     --------->MYB46(3) ---------GT1   <----------DOF2    --------->YAB1--------->AHL20(2)                <---------ICU4<---   tcacgagattattggaatctttattgcataaacaatatcaaaattgtgtttttatatataccctttcaaaacgttatgggattcaaaattacacccacac  13505000 <---------ALFIN1 -------->MYB46(3) ---->MYB46(1) ---->MYB83 ------>MYB55(1) ------>ANAC46                                ------>MYB83 -------ALFIN1                               --------->MYB55(1) ----->MYB46(3)                              <---------ALFIN1 ------MYB111(2)                            <---------MYB55(2) ----->DEAR3(1)                             --------->DEAR3(1) ---->ANAC58                                --------->MYB46(3)                    <---------AHL20(2) ---->ANAC46                                <---------MYB111(2)                  <---------AHL20(1) ---->ANAC58                               --------->ANAC58           <-----------GT1 ---ALFIN1 <---------WOX13(1)  ----------->GT1------>MYB46(1)       <-----------GT1    <-----------GT1 -ALFIN1 --------->ATHB12--------->WOX13(1)--------->ANAC58        <---------ICU4--------->ARR11(3) ------MYB55(2)        <---------YAB1      --------->ANAC46    <---------AHL20(2)<---------ARR11(3)   ccaccacttattgattggacataacatcattcaatgtaaaattacacccacctcttattcatgttttaattttcacttctgtatatatttttcgaatttc  13505100                                                                                ----------->GT1                                                                            --------->WOX13(1)              <---------DAG2                                               ---------->DOF2              <----------DOF2                                              <---------AHL20(2)           ---------->ID1   <---------YAB1                                 --------->AHL20(2)           <-----------GT1 <---------TOE1(2)               <----------DOF2--------->AHL20(2) --------        --------------->AtSPL8           <-----------RAV1(1)              <---------ATHB12   <-------     <---------YAB1        <---------TOE2(2)         ---------->DOF2<---------ARR11(3)     ----------   atgtattctgtttgtacttttttgggtcttatgttaagcccatttgtgggtttgtaaaagtctttgacaatatccaataaatcagtgaaaaaaaaaagaa  13505200                --------->At5g28300           <---------YAB1      --------->YAB1      <---------ICU4     <---------YAB1     <---------AHL20(2)     --------->AHL20(1)     --------->AHL20(2)     --------->ICU4                                                                      --------->ANAC58  <---------AHL20(2)                                                                   ---------->DOF2  --------->AHL20(1)                                                                <----------DOF2  --------->AHL20(2)                                                            ----------->TCP11(1)- --------->AHL20(2)                                                         <---------ANAC46  ------- --->GT1 --------->YAB1                                                     <-----------RAV1(1)  ---- ---ID1 <---------YAB1                     <-----------------AGL3     <---------ARR11(3) --------->ANAC58 >DOF2-------->ATHB1        <---------ATHB12<----------DOF2      ------------>CBF<---------PCF2------   aaaaaaaattattatcactgtaaacttcaaatcaattcaacttgtgctttacatgggtcttcgctggaccaatatgttttgtgggcctttcaagcccaac  13505300                                                            <---------At4g35610                                                            --------->At4g35610                                                            --------->ZAT2                                                            <---------ZAT2                                                          <------NtERF2                                                         <---------At4g35610        -------->P                                       --------->LBD16                    <------ZmHOX2a(2) -------->YAB1                                           ------>NtERF2              --------->ALFIN1 ---->RAV1(1)                        <---------YAB1   ------>NtERF2   <-----------GT1       ========= ----->YAB1                   --------->TOE2(3)       --------->At4g35610           <---------AtMYB61 ------>CBF         ---------->DOF2  *TSS            <-----------RAV1(1)          --------->CCA1(2)<-   aatagttatctaccctagctcaaaaagagttatcttattctcattctctctctctctgccgcagctatcaatttactggagaagagatggtgggatcaga  13505400                                                       <---------ZAT14                         --------->ANAC58           --------->At4g35610                   --------->AHL20(2)  ---------->DOF2 --------->ZAT14                            ---               ----------->GT1 ---------->DOF2     --------->RAP2.3(2)                            ---             ----------->GT1 --------->ANAC58      >>>>>>>>>AtERF-4                             -----            --------->ALFIN1 --------->ANAC58      --------->RAP2.6(2)            <------ZmHOX2a(1)       <------ZmHOX2a(1) --------->ANAC58         --------->RAP2.3(1)     --------->LBD16    -------- =============HOX2a_HOX2a--------->ANAC46 ---------->DOF2                <---------ANAC46    -------- --------ARR14(2) XXXXXXXXXXXXXXXXXXXX>MIR835-3P <---------ZAT2          <---------ANAC55(2) --------   ggttttggaggaatgtggagaaaaaataagcaagaaagagtcaaagaagcgagccgctaaactggagaagttgctccgtaaacaggaacgagaagaagcc  13505500                                                        <---------ANAC58                                                        --------->ANAC55(2)                                                        <---------ANAC55(1)                                                        <---------ANAC55(2)                                                        <---------bZIP60(2)                                                        =============================================                                                        <---------TGA2(1)                                                        --------->bZIP60(1)                                                        <---------O2                                                        --------->TGA2(1)                                                        =================================MYC_MYB                                                        --------->TGA1a                                                        <---------TGA1a                                                        =================================MYC_MYB                                                        <---------bZIP60(1)                                                        --------->O2                                                        <---------ANAC46                     --------                                                        <---------ANAC58                     ========                                                       ----------->STF1                 <---------ANAC46                                                      <---------TGA2(2)             <-------GAMYB                                                     ----------->HVH21             --------->MYB55(2)      <---------CCA1(2)                              ----------->TGA1            <------NtERF2    <---------ICU4                                  <-----------HVH21            <---------At4g35610 --------->YAB1                           --------->ANAC58                       ==================== ------>bZIP60(2)       <------ZmHOX2a(1) --------->ANAC46                       --------->At4g35610- ------>REM1(1)       --------->ALFIN1    --------->ANAC58----------->HVH21      <-------GAMYB      < ------>RAV1(1)      <------ZmHOX2a(1)   --------->HSFB2a(2)                   <---------DEAR3(1) <-- ->ANAC46       <---------HSFB2a(2)      <---------HSFB2a(2)    <---------MYB52(2) <---------MYB46(3) ->ANAC58      <---------LBD16  ------->TEIL   <---------MYB52(2)             --------->ATERF1(1) --- ->ANAC58 <----------DOF2  <------ZmHOX2a(1)   --------->MYB46(3) --------->MYB52(1)=================   acatcatcatctctttctctggaggaggaggatgaatcgtgttccagcaactacggtgacgtgactactaacgagttgcagtcggctgttgagggaaaag  13505600       <---------TGA1a                                                  --------->GLK1(2)       =====================MYC_MYB                                    --------->ARR14(2) ===bZIP_DOF                                                           <---------GLK1(2) -->DOF2                                                             --------->ANAC58          <----- ================bZIP_DOF                    <---------ARR14(2) --------->ZAT18           ------>MYB83 ================MYC_MYB               <---------WRKY12         <---------ZAT14           ------>MYB46(1) -------->ZAT18                        <-----------RAV1(2)      --------->ZAT14    <------MYB83<----- ---------ZAT14                      <-----------HVH21          <---------ZAT18    <---------DEAR3(2) -------At4g35610                   <---------PCF2         <---------ETT(2)        <------MYB46(1) ------>At4g35610   <-------GAMYB<---------ANAC46          --------->ETT(2)       --------------->AtSPL8 ================MYC_MYB      --------->GLK1(2)    <------ZmHOX2a(2) --------->ANAC58   <---------MYB59   agctcactgatgtgagcaacttggttgaagagattgtggggtcagaggtttcgatcagaggtcgactgcacaagaatcgcttagtcggtaccaaattgtt  13505700                                                                                                -----                                                                                                <----                                                                                    <---------At4g35610                                                                                    --------->At4g35610                                                                                    ----------->RAV1(2)                  >>>>>>>>>GATA-3                                    <---------AHL20(2)    <---------ANAC58                  --------->ARR14(2)                              --------->ATHB12  =================                  >>>>>>>>>GATA-1          <------ZmHOX2a(1)     <---------YAB1     --------->ZAT2                  >>>>>>>>>GATA-4  --------->ALFIN1    <------MYB46(1)<---------AHL20(2)   ----------                  >>>>>>>>>GATA-2<---------ANAC58      <------MYB83  --------->AHL20(2)    <---------ANAC58                  <---------ARR14(2)  <---------ANAC46--------->ALFIN1--------->AHL20(2)   <---------ANAC46   ------>ZmHOX2a(2)  <---------At5g28300<---------ANAC46        --------->ICU4     <---------ZAT2 --------->ARR11(3)   <---------LBD16 --------->ALFIN1<---------MYB46(3)        --------->ANAC58----- <---------ARR11(3)  <-----------GT1<---------ANAC46  <---------AtMYB61         --------->ANAC58----- ----ANAC58 --------->DAG2       <---------ANAC46     --------->MYB111(1)   <-----------HVH21  <----- ----ANAC58---------->DOF2       <---------ANAC58    <--------P--------->YAB1  --------->WOX13(1)  <-   tgtgatcttgagggaaagtggattcacggttcaatgcgtggtggaggagaccagagttggtgcaaacatgattaaatttgtcaagcagctgagtcgtgaa  13505800  Previous    Next  AGI:  At4g26870.1    Description:  aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative. similar to aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT4G31180.2); similar to aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT4G31180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43985.1); similar to unknown [Picea sitchensis] (GB:ABK25168.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ56912.1); contains InterPro domain Aspartyl-tRNA synthetase, class IIb; (InterPro:IPR002312); contains InterPro domain Aminoacyl-tRNA Range:  from: 13505337    to: 13507876    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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