Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   <-----------GT1                                                                             --------->YAB1                                                                       <---------TOE1(2)                                                                       <---------TOE2(2)                                                                      ------>ZmHOX2a(1)                                                                     --------->TOE2(2)                         <---------ANAC58                            --------->TOE1(2)                <---------ARR11(3)                                  ------>ZmHOX2a(2)                --------->ARR11(3)      --------->ANAC58           <------ZmHOX2a(2)               --------->GLK1(1)        --------->ANAC58           =============HOX2a_HOX2a            ----------->HVH21 <-----------GT1                     <---------ARR11(3)  <---------ZAT14        <---------ANAC58                         --------->ARR14(2)  --------->ZAT14        <---------ANAC46                         <---------ARR14(2)            <---- -GT1      --------->LBD16 ----------->GT1               <----------DOF2 <------ZmHOX2a(1)    -------   taacttcactgcccgtgaaatcttttgacttgtaacaatagcaagaaacaaaaacaagtctttcactggatcctaggaatgatataccatttgatacaac  13471900            --------->YAB1         <------NtERF2    --------->ARR14(2)            ------>NtERF2                                                   ---    ------->TEIL                 --------->ANAC46                                                ----    <---------ARR14(2)          ------>NtERF2                                            <---------HSFB2a(2)    --------->GLK1(2)     --------->ARR11(3)                           <---------ICU4    --------->HSFB2a(2) --------->ANAC55(2)      <-----------ARR10                           --------->ICU4   <------ZmHOX2a(2) <---------YAB1           <---------ARR11(3)                --------->YAB1            <---------ARR14(2) <---------ANAC55(2)     <---------GLK1(2)                <---------WOX13(1)          --------->ARR14(2) -----ICU4  --------->AHL20(2)  --------->LBD16         --------->ATHB12     --------->LBD16     <--- ---->RAV1(1)  ---------->DOF2<---------LBD16       --------->ATHB12  <---------YAB1  --------->AGP1   attacgaatccaaattataaagacacaaaatctccgcgcctattttcttcagatttattgattaataagctcataattccgaaacccagatcgagaagta  13472000         <---------ARR11(3)         --------->ARR11(3)                                                  <---------TOE2(3)     --   ----------->GT1                                                       <----------DOF2           <-  --------->DAG2                                                        <---------ANAC58      ------- ---------->DOF2                                                        <---------ANAC58   <---------ALFIN1 -------->GT1        <-----------RAV1(2)                                <---------ANAC46   --------->REM1(1) ----->MYB59      ----------->HVH21                                <---------AtLEC2      <-----------HVH21 ------TOE2(3)<---------At5g28300         <---------ICU4     <---------GLK1(2)   ---------->DOF2   <-   aggtaaagtaagaacttacagtgacaggggcatcaactctctgaacattactctcttcaacaagaatttccatggctttgaggcaaagagccttcacctc  13472100                                           =================================HOX2a_HOX2a                                       ----------------->AGL1          <---------MYB46(3)         <-----------GT1         <---------ATHB12    ------>NtERF2 <------ZmHOX2a(2)        --------------------->WRI1--------->ARR14(2)                      ------>ZmHOX2a(1) ------->ARR14(2)         <---------At4g35610      ----------->HVH21 ------>ZmHOX2a(1)=============== --------GLK1(2)          <---------ZAT2  --------->ARR14(2) <-----------GT1          ------>ZmHOX2a(1) -->DEAR3(1)              --------->ZAT2  <---------ARR14(2)<-----------GT1        ------>ZmHOX2a(1) --------ARR14(2)         --------->At4g35610   <---------AGP1     <------------------------ANAC81   cgattcgctcaatggttcgcatcgcttaagctgccctatttgccgatctaggtctgacatttttacctctcctctcctcttcttcctccttctattactc  13472200                 --------->TOE2(3)               <------ZmHOX2a(2)              <---------ARR11(3)                     --------->ANAC58              --------->ARR14(2)                     --------->ANAC58              <---------ARR14(2)                     --------->ANAC46              --------->ARR11(3)                  ------->GAMYB         <---------ARR14(2)                     ------>MYB83         --------->ARR14(2)                     -------->P       --------->LBD16                          ------>MYB46(1)     <---------LBD16                          --------->AtMYB61     <------NtERF2------>ZmHOX2a(1)           --------->MYB46(3)    --------->MYB52(1)                        <---------MYB111(1)    ------>NtERF2--------->TOE1(3)           --------->MYB46(3)   --------->DEAR3(1)                        <---------MYB55(2)              <---------ALFIN1   <---------ALFIN1                          <---------MYB52(2)             <---------ZAT14  <---------MYB55(2)                        -------->P          --------->GLK1(2)  --------->MYB46(3)            --------->YAB1------->GAMYB---------->DOF2 >>>>>>>>>>>>>>>>>LFY --------->At4g35610       <---------YAB1   --------->ANAC58    <---------ARR14(2) <---------At4g35610     --------->At4g35610--------->ANAC58    --------->ARR14(2) =====================HOX2a_HOX2a          --------->WOX13(1)  <---------GLK1(2) <-----------HVH21  -   ttcagccaccggaaacgatccttaatctgatgaataagaaggaatcaaccaaccctcgccaaaaagaatctgatattctccactgtcgaatgtattaagc  13472300                                          <------ZmHOX2a(1)                                      --------->LBD16                                     --------->ANAC46                <----------DOF2     <---------GLK1(2)                                    <---------LBD16     --------->ANAC46               <---------TOE2(3)                                 ------>ZmHOX2a(1) <-----------GT1<-----------GT1<---------TOE1(3) --------->ID1                  <---------ALFIN1*TSS   --------->ANAC46       ------>ZmHOX2a(1)   tcgtcgtcttcttcccaaggagagagaattagctcctctccgcaggaatgttttttccccccaaggtttttctttccctccttatggtttagattatttt  13472400                                                                                          ------>NtERF2                                                                                          <---------PCF5                                         --------->GLK1(2)                                --------->PCF2                                     <---------HSFB2a(2)                                 <-----------TCP11(1)                                     --------->HSFB2a(2)                                --------->ATERF1(1)                              --------->ARR14(2)                                        <------NtERF2                           --------->ANAC55(2)                 --------->TCP20         <---------LBD16                           <---------ANAC55(2)                 <---------PCF2<---------DAG2  <-------                         --------->AHL20(2)            --------->ANAC46     <-----------------AGL3              <----------DOF2 <---------ARR14(2)       --------->ANAC55(2)<-----------GT1<---------ATERF1(1)        <---------ALFIN1 <-----------GT1<---------GLK1(2)      --------->PCF2<----------DOF2 --------   caaaatcgcctcacttcttttctgaaattacatattcgtccagaatgtgttaagttcacataatgggcccagaatataactttataaggcccggcccaca  13472500                                                                             ------>NtERF2                                                                            --------->DEAR3(1)                                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                            ----------->HVH21                                                                            <---------DEAR3(1)                                                                         <---------DEAR3(1)                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                                                     <---------YAB1                              <---------DEAR3(1)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                              --------->ANAC46                       <xxxxxxxxxxxxxxxxsmallRNA(i)                 --------->ANAC55(2)                         ------>ZmHOX2a(2)<------NtERF2         <                 --------->YAB1  <---------ANAC46 ------->GAMYB      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        --------->RAP2.6(2)  <---------LBD16     <------------MYB.PH3(1) ------>ZmHOX2a(2)          -   ---------->DOF2          <---------ALFIN1   <---------DOF5.7(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          --------->MYB52(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --ALFIN1------>NtERF2     <---------REM1(2) --------->ARR11(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --->RAV1(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->RAP2.6(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   tatatcaaagcggccattttcgtaatttctccacggcgagaagagaagataacggcatttcgatcggagttttgatcggcgacgatggagagaaacgttg  13472600                                                                         ------>NtERF2                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                          <---------ICU4--------->ANAC58                                                          --------->YAB1--------->RAP2.6(2)                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <---------YAB1 --------->ANAC46                                                         --------->ICU4 --------->ANAC58                                                      <---------YAB1   --------->SPL7                                                    ----------->GT1 --------->HSFB2a(2)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             <---------ZAT6 <---------YAB1                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                    --------->At4g35610  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxsmallRNA(s)     xxxx                      <---------ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   ----             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->YAB1  <---------HSFB2a(2)        <-----    --------->At4g35610 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------GLK1(2)                <xxxxx  --------->ARR11(3)  <---------ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <-----------GT1 xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <xxxxxxxxxxxxxxxx ---------->ARR10     <---------ANAC46 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   agaagatgctgaacagagtttcagtcgtgttcttaagcatcggaacagtgttaatggtgattatgattctccagacgccaaaacttgtatttcaccagaa  13472700                                                           --------->At4g35610                                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        <---------At4g35610                               ------>ZmHOX2a(2)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              <------ZmHOX2a(2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              xxxxxxxxxxxxxxxx>smallRNA(i)<---------ARR11(3)                              --------->CCA1(2)     <-----------HVH21                             --------->ARR11(3)     <-----------TGA1                             <---------ARR11(3)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                             --------->ARR14(2)    <---------O2                 --------->HSFB2a(1)                             --------->AGP1        --------->TGA1a              <---------HSFB2a(1)                --------->ANAC55(2)                ===============================bZIP_DOF                --------->ANAC58                   --------->O2                xxxxxxxxxxxxxxxx>smallRNA(s)          --------->TOE2(3)  <---------ARR14(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->bZIP60(2)         <xxxxxxxxxxxxxxxxsmallRNA(i)       --------->ARR14(2)   --------->GLK1(1)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ARR14(2)      xxxxxxxxxxxxxxxx>smallRNA(s) <xxxxxxxxxxxxxxxxsmallRNA(i)               xxxxxxxxxxxxxxxx>smallRNA(i)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->ARR14(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     ------->TEIL  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <-------TEIL<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxx>smallRNA(i)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(i)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----->At4g35610--------->ANAC58   --------->TOE1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----GLK1(2)    --------->ANAC46  xxxxxxxxxxxxxxxx>smallRNA(s)         ---------->DOF2 --------->GLK1(2) xxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(s)     ------>ZmHOX2a(1)    <---------CCA1(2) xxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <---   gctccatcgaaacctcatacgcattttctgagatctacatgcgattcatcgcctcgtcagcatcttcctctcccaaagaagaacgctcgaatctggttct  13472800  Previous    Next  AGI:  At4g26720.1    Description:  PPX1 (protein phosphatase x-1); protein serine/threonine phosphatase. Identical to Serine/threonine-protein phosphatase PP-X isozyme 1 (PPX1) [Arabidopsis Thaliana] (GB:P48529); similar to PPX2 (protein phosphatase x-2), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G55260.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ58266.1); similar to Os09g0284200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062774.1); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatas Range:  from: 13470038    to: 13472348    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g26730.1    Description:  methyltransferase. similar to methyltransferase [Arabidopsis thaliana] (TAIR:AT2G16030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24211.1); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) Range:  from: 13472585    to: 13473315    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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