Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         --------->ANAC58                                       --------->ANAC58         ------>ZmHOX2a(2)                                       --------->ANAC46        <------ZmHOX2a(2)                                      --------->SPL7          <---------AGP1                                      <-------TEIL            --------->ARR11(3)                                    <---------SPL7            <---------ARR11(3)                                   --------->ANAC58           --------->ARR14(2)                                   <---------ANAC55(2)        <---------ARR14(2)     <---------MYB111(2)                                   --------->ANAC58   --------->ARR14(2)             <---------MYB46(2)                                   --------->ANAC55(2)<---------ARR14(2)           <-----------GT1                                  <---------------AtSPL3      --------->AGP1  <---------AHL20(2)                         <------NtERF2------->TEIL   =================HOX2a_HOX2a --------->AHL20(2) ---->YAB1              --------->RAP2.6(2)          ==================HOX2a_HOX2a<---------AHL20(2) -----------AGL15       ----------->RAV1(1)          <------ZmHOX2a(1)       <---------MYB52(1) ---->TOE1(3)         <---------At4g35610        <---------TOE2(1)         ----------->GT1 ---->TOE2(3) --------->LBD16     --------------->AtSPL3<-------TEIL     <---------ZAT14 --------->TOE1(2) ----------->AG       --------->At4g35610        <---------TOE1(1)       <---------At4g35610 ----GT1     --------->LBD16---------->DOF2   <---------SPL7 <---------CCA1(2)--------->AHL20(2)   ataagaggggaagtcccgagtttcagcggcaaaagacacgtacggcacagtacgaggattcatagatcttcagacagcagttaattaactaccttcgatg  13454500                                                                                  <---------ZAT18                                                                               ---------->DOF2                                                                         <---------At4g35610                                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                    <---------At4g35610                                                                    --------->At4g35610                                                                    xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                <---------REM1(1) --------->ZAT18                                                                xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                xxxxxxxxxxxxxxxx>smallRNA(se3)                                                                xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxx>smallRNA(le3)                                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                               xxxxxxxxxxxxxxxxx>smallRNA(le3)                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                               xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                               *TSS------->TEILxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)x                       --------->ANAC58                        xxxxxxxxxxxxxxxxxxx>smallRNA(l2)     x                ---------->DOF2----------->GT1        ------------>CBF <-----------RAV1(2)          x     <-----------------AG <----------DOF2  --------->YAB1     xxxxxxxxxxxxxxxx>smallRNA(si3)  <------   <---------ETT(1)    --------->ANAC58  --------->GLK1(2)xxxxxxxxxxxxxxxx>smallRNA(s)        <------   atgttccgacaaatttggcaaagacacgctttgtagtaaaacgaatcagtatgcatcacaatggggatgtagctcagatggtagagcgctcgcttagcat  13454600                          --------->At4g35610                          --------->GLK1(1)                         ------->TEIL                        <---------ALFIN1                       --------->LBD16                      --------->ANAC58                      --------->ANAC46                   xxxxxxxxxxxxxxxx>smallRNA(le3)                xxxxxxxxxxxxxxxx>smallRNA(s)              ------>ZmHOX2a(2)              xxxxxxxxxxxxxxxx>smallRNA(i)             xxxxxxxxxxxxxxxx>smallRNA(s)        <-------PIF5  --------->ANAC58                                                       <-------        ------->PIF5 <---------LBD16                                                        ---------      <---------LBD16--------->ANAC46                                             --------->YAB1   xxxxxxxxxxxxxxxx>smallRNA(s)                                                ------>MYB83 <-------- xxxxxxxxxxxxxxx>smallRNA(si3)                                                 ------>MYB46(1) xxxxxxxxxxxxxxxxx>smallRNA(le3)                                           ------>MYB46(1) --------->YAB1 xxxxxxxxxxxxxx>smallRNA(le3)                  <---------YAB1              -------->P   --------->AHL20(2) ---ANAC58  --------->ARR14(2)        <---------TOE2(3)             ---------->DOF2    --------->AHL20(2) ---ANAC58  <---------ARR14(2)      <---------AHL20(2)      --------->PCF2 ------>MYB83<---------AHL20(2)   gcgagaggcacggggatcgataccccgcatctccatattttatgttgatatcatttttcaagggcccatagaaagcctaccaaatgaaaataattttaat  13454700                                                   <---------ANAC58                                                   <---------ANAC58                                                   <---------AtLEC2                                              --------->GLK1(2)                                              <---------ARR14(2)                                              --------->ARR14(2)                                           ------------>CBF                                           <------NtERF2                                          ----------->RAV1(1)                                          ------>NtERF2                                         ----------->HVH21                                         --------->DEAR3(1)       --------->LBD16                                         <---------ETT(2)        --------->ANAC46                                        --------->RAP2.3(1)      --------->LBD16                                       <---------ATERF1(1)      <---------HSFB2a(2)           -------                                       --------->LBD16          --------->HSFB2a(2)    --------->GLK1(1)                                       ------>NtERF2 ----------->HVH21                 <---------GLK1(1) --AHL20(2)                           <---------DEAR3(1)     <---------MYB52(1)  <------------CBF   - >AHL20(2)                           <---------LBD16<-----------HVH21         --------->TOE2(3)     < -AHL20(2)                       ------>ZmHOX2a(1) <---------ANAC46        <-----------GT1    <------   ttcaaattttgttcatcgtttaatctctctacctccttctccggcgacaatctgcgtgactccgttcccgaagctatttatcttattggaattctctgct  13454800                                                                                                <----                                                                                        <---------DEAR3(1)  <-------TEIL ----------->HVH21      <----------DOF2    --------->ATHB12              --------->ATERF1(1) -->ZAT2   <---------At4g35610 --------->GLK1(1)        ----------->ARR10             <---------SPL7 -------->ARR14(2) ------->GAMYB--------->ARR14(2)      <---------YAB1                <---------ATERF1(1) ---------ARR14(2)<------------MYB.PH3(1)   ----------->GT1        --------->ANAC58   ------>NtERF2 ---ZAT2   --------->At4g35610 <---------GLK1(1)   --------->YAB1  --------->ANAC58  --------->DEAR3(1)   cggattcattttctgctgtaacagtctcttgtgaaatctgcttttgttgtaaatcacgatgattcgcataagcatcggagttaatcgccgtctgcgttat  13454900                           <---------At4g35610                           --------->At4g35610                          --------->ARR14(2)                          <---------ARR14(2)                          <---------AGP1                            <---------ALFIN1                          <---------ARR11(3)                       --------->MYB46(3)                   <---------ZAT14                           <------NtERF2  <---------ARR14(2)      -                   --------->ZAT14                          <---------At4g35610                ------                 <---------ETT(2)                           <---------ATERF1(1)                ======                 --------->ETT(2)                           --------->At4g35610            <---------ARR14(2)               ------>NtERF2------>ZmHOX2a(2)              <---------DEAR3(1)   ------>ZmHOX2a(1) ---             <---------ANAC58                <----------DOF2------>NtERF2   --------->ARR14(2) ======             <---------ANAC58         --------->STY1(1)   <------NtERF2  --------->LBD16   --------->ARR14(2) -----YAB1  <---------At4g35610       <---------STY1(1) <---------DEAR3(1) <---------GLK1(2) --------   caattctcaagttttgctggctacagtggatctgaaaaccctaggctctttaaaactctcggcgctgcaaacaccccgattcctcacagaaggaatcctg  13455000              ------>ZmHOX2a(2)             <------ZmHOX2a(2)            --------->ARR14(2)            --------->ARR11(3)            <---------ARR11(3)            <---------ARR14(2)            --------->ARR14(3)            --------->AGP1     <----------ID1   ---------->DOF2                         <---------ZAT2  --------->MYB52(1)     <<<<<<<<<WRKY18   ----------->RAV1(2)                   --------->YAB1  ---------->DOF2      --------->TOE2(3)   <---------At4g35610     ----------->GT1 -------->TOE2(3)--------->ATHB12          --------->O2            --------->At4g35610 >ZmHOX2a(1)<---------ARR14(3)            ------>NtERF2           --------->ANAC58 ====================HOX2a_HOX2a         <---------ALFIN1         --------->ANAC58   <---------ZAT18 ---->TEIL----------->ARR10 <-----------RAV1(1)         --------->ATHB12   --------->ANAC58 ===================HOX2a_HOX2a  <---------ANAC46      <---------YAB1      --------->ANAC58    <----- --->RAV1(2)<---------AGP1  ===========================RAV<---------WOX13(1)   <-----------HVH21   aacctaaaggccaagatcttgatttcgtcaatgttgctcatagccacctgattcaatctgattgggataagctaaataagctatcagaccacttggattc  13455100                                      <---------ARR11(3)                                      --------->ARR11(3)                                   <---------GLK1(2)                                  <---------GLK1(2)                               ---------->DOF2                                      <---------TOE2(2)                           <-------TEIL                                             <---------TOE1(2)                          --------->CCA1(2)                                        <-----------RAV1(2)                         <---------ARR14(2)                                 --------->ANAC46     --------->WRKY18(1) --------->ARR14(2)                                 --------->ANAC58 --TEIL                  --------->ARR11(3) <----------DOF2                 --------->ANAC58   atttagggtcaagaacgtattactgaagatacagaaagattatcttctttctcttgaattcttcaattgggcgaaaacccgaaacccaggttctcactct  13455200                                                                                                  <--                                                                                                 <---                                                                                            <--------                                                                                            <--------                                                      <---------ZAT14                       ---------                                                      --------->ZAT14                       <--------                                                      --------->At4g35610                 <---------MYB46(3)                                        --------->LBD16                               <-----------RAV1(1)                             --------->ZAT6           <---------At4g35610    ------->TEIL<---------AtMYB61                --------->ARR11(3)     --------->ANAC46                  --------------->AtSPL8  ----   cttgaaacccatgctatagttcttcacactctcactaaaaaccgcaagttcaagtctgcagagtccattttgagagatgtacttgtaaatggtggtgtgg  13455300  <---------ANAC58  <---------ANAC58                     --------->LBD16 -------GLK1(1)                       <---------LBD16 ------ARR14(2)                       <---------ANAC46 -ANAC46                            --------->MYB52(1) ------>NtERF2 -ANAC58                            --------->SPL7    --------->ANAC58 >ALFIN1                          <---------SPL7      --------->ANAC58 -ANAC58---------->DOF2   ---------->ID1      <---------YAB1                         <----------DOF2 ----->ARR14(2)       <----------DOF2<---------LBD16  --------->ANAC46  <-----------GT1   atttgcctgccaaagtatttgatgctttgttgtattcgtaccgggaatgtgattctacgcctagagtgtttgattcactcttcaaaacttttgctcattt  13455400  Previous    Next  AGI:  At4g26675.1    Description:  pre-tRNA. tRNA-Ala (anticodon: AGC) Range:  from: 13454563    to: 13454635    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g26680.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G05670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41185.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 13454859    to: 13456636    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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