Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                   <-                           ---------->DOF2                                                      -----                        --------->TOE2(3)                                                       -----                 --------->ANAC58                           <---------TOE1(3)                   -----                 --------->ANAC46                           <---------TOE2(3)                   -----                 --------->ANAC58              --------->MYB52(2)                    <---------ARR11(3) -----DOF2----------->GT1------>ZmHOX2a(1)   <---------MYB52(1)              --------->AHL20(2)<-----   tgtgaagatggatagcaaaacgacatcctcaaagctatcaactcttcgtttgctacaaattcaaggtttctgtgttcaataaaacaagatgtaatcacac  13454200  --------->ANAC58  --------->ANAC58 ------->ARR14(2) --------ARR14(2)                                                                              <<<<<< ---->ANAC55(1)                                                                      <---------ANAC58 ---->ANAC58           --------->O2         <------ZmHOX2a(1)                        <---------ANAC58 ---->ANAC58           <---------O2         <---------------------WRI1            <---------ZAT18 ---->ANAC46         --------->CCA1(2)     ----------->GT1                       <---------ANAC58 ----LBD16    <------ZmHOX2a(1)       ---------->DOF2    --------->ANAC46        <---------ANAC58 ---   ggaaacgaaacaactaggaagagagacgagacacaagggtgaaagaggagaaactttctaagacacatttcatcgaacagtttgtgtgcttgtctatttt  13454300                                --------->ANAC58                                                -----                     <---------------AGL15                                                      -----                     --------------->AGL15                                                      -----                    ----------------->AGL3                                                      <----                    =================================================================================                    <-----------------AGL3                                                     ------      --------->TOE2(3)         --------->ANAC58                                      <---------TOE2(3)      --------->TOE1(3) --------->AHL20(2)                  --------->YAB1            <---------TOE1(3) <<<<GT-3b      <---------At4g35610                     --------->ICU4  ------->TEIL ---------->DOF2 ------>TOE2(3) <-------GAMYB  <---------ZAT18    --------->MYB59   --------------->AtSPL8   <-------   tcttaaaacctcaaattcagttgctataaattgcacgcttattgaaacgagttatgtagtaatgagaaaaactgtacctgttttttttaaagttttaacc  13454400                                       --------->ANAC58                                       --------->ANAC58         ------>ZmHOX2a(2)                                       --------->ANAC46        <------ZmHOX2a(2)                                      --------->SPL7          <---------ARR11(3)                                      <-------TEIL            --------->ARR11(3)                                    <---------SPL7            <---------ARR14(2)                                   --------->ANAC58           --------->ARR14(2)                                   --------->ANAC55(2)        <---------AGP1         <---------MYB111(2)                                   <---------ANAC55(2)--------->ARR14(2)             <---------MYB46(2)                                   --------->ANAC58   <---------ARR14(2)           <-----------GT1                                  <---------------AtSPL3      --------->AGP1  --------->AHL20(2) ---->TOE2(3)            <------NtERF2------->TEIL   <------ZmHOX2a(1)       <---------MYB52(1) ---->TOE1(3)           ----------->RAV1(1)          ==================HOX2a_HOX2a<---------AHL20(2) ---->YAB1    --------->LBD16     --------------->AtSPL3<-------TEIL       ----------->GT1 -----------AGL15       --------->RAP2.6(2)          =================HOX2a_HOX2a --------->AHL20(2) ===========MADS_MADS --------->At4g35610        <---------TOE1(1)       <---------ZAT14 --------->TOE1(2) ----------->AG       <---------At4g35610        <---------TOE2(1)       <---------At4g35610 ----GT1     --------->LBD16---------->DOF2   <---------SPL7 <---------CCA1(2)<---------AHL20(2)   ataagaggggaagtcccgagtttcagcggcaaaagacacgtacggcacagtacgaggattcatagatcttcagacagcagttaattaactaccttcgatg  13454500                                                                                  <---------ZAT18                                                                               ---------->DOF2                                                                         <---------At4g35610                                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                    xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                    <---------At4g35610                                                                    --------->At4g35610                                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                xxxxxxxxxxxxxxxx>smallRNA(se3)                                                                xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                <---------REM1(1) --------->ZAT18                                                                xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                               xxxxxxxxxxxxxxxx>smallRNA(se3)                                                               *TSS------->TEILxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxx>smallRNA(le3)                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                               xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                               xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                               xxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                               xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxx>smallRNA(le3)                                                               xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                               xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    x                       --------->ANAC58                        xxxxxxxxxxxxxxxxxxx>smallRNA(s2)     x                ---------->DOF2----------->GT1        ------------>CBF <-----------RAV1(2)          x     <-----------------AG <----------DOF2  --------->YAB1     xxxxxxxxxxxxxxxx>smallRNA(si3)  <------   <---------ETT(1)    --------->ANAC58  --------->GLK1(2)xxxxxxxxxxxxxxxx>smallRNA(s)        <------   atgttccgacaaatttggcaaagacacgctttgtagtaaaacgaatcagtatgcatcacaatggggatgtagctcagatggtagagcgctcgcttagcat  13454600                          --------->GLK1(1)                          --------->At4g35610                         ------->TEIL                        <---------ALFIN1                       --------->LBD16                      --------->ANAC58                      --------->ANAC58                   xxxxxxxxxxxxxxxx>smallRNA(le3)                xxxxxxxxxxxxxxxx>smallRNA(s)              xxxxxxxxxxxxxxxx>smallRNA(i)              ------>ZmHOX2a(2)             xxxxxxxxxxxxxxxx>smallRNA(s)        <-------PIF5  --------->ANAC46                                                       <-------        ------->PIF5 <---------LBD16                                                        <--------      <---------LBD16--------->ANAC46                                             --------->YAB1   xxxxxxxxxxxxxxxx>smallRNA(s)                                                ------>MYB83 --------- xxxxxxxxxxxxxx>smallRNA(le3)                                                  ------>MYB46(1) xxxxxxxxxxxxxxx>smallRNA(si3)                                             -------->P   --------->AHL20(2) xxxxxxxxxxxxxxxxx>smallRNA(le3)               <---------YAB1              ------>MYB46(1) --------->YAB1 ---ANAC58  <---------ARR14(2)        <---------TOE2(3)             ---------->DOF2    <---------AHL20(2) ---ANAC58  --------->ARR14(2)      <---------AHL20(2)      --------->PCF2 ------>MYB83--------->AHL20(2)   gcgagaggcacggggatcgataccccgcatctccatattttatgttgatatcatttttcaagggcccatagaaagcctaccaaatgaaaataattttaat  13454700                                                   <---------ANAC58                                                   <---------AtLEC2                                                   <---------ANAC58                                              --------->GLK1(2)                                              --------->ARR14(2)                                              <---------ARR14(2)                                           ------------>CBF                                           <------NtERF2                                          ----------->RAV1(1)                                          ------>NtERF2                                         --------->DEAR3(1)                                         <---------ETT(2)         --------->LBD16                                         ----------->HVH21       --------->ANAC46                                        --------->RAP2.3(1)      --------->LBD16                                       ------>NtERF2 ----------->HVH21                        <------                                       <---------ATERF1(1)      <---------HSFB2a(2)    --------->GLK1(1)                                       --------->LBD16          --------->HSFB2a(2)    <---------GLK1(1) --AHL20(2)                           <---------DEAR3(1)     <---------MYB52(1)  <------------CBF   < -AHL20(2)                           <---------LBD16<-----------HVH21         --------->TOE2(3)     - >AHL20(2)                       ------>ZmHOX2a(1) <---------ANAC46        <-----------GT1    -------   ttcaaattttgttcatcgtttaatctctctacctccttctccggcgacaatctgcgtgactccgttcccgaagctatttatcttattggaattctctgct  13454800                                                                                                <----                                                                                        <---------DEAR3(1)  <-------TEIL ----------->HVH21      <----------DOF2    --------->ATHB12              --------->ATERF1(1) ---ZAT2   <---------At4g35610 --------->GLK1(1)        ----------->ARR10             <---------SPL7 ---------ARR14(2) ------->GAMYB--------->ARR14(2)      <---------YAB1                ------>NtERF2 -------->ARR14(2)<------------MYB.PH3(1)   ----------->GT1        --------->ANAC58   <---------ATERF1(1) -->ZAT2   --------->At4g35610 <---------GLK1(1)   --------->YAB1  --------->ANAC58  --------->DEAR3(1)   cggattcattttctgctgtaacagtctcttgtgaaatctgcttttgttgtaaatcacgatgattcgcataagcatcggagttaatcgccgtctgcgttat  13454900                           <---------At4g35610                           --------->At4g35610                          --------->ARR14(2)                          <---------ARR11(3)                          <---------AGP1                            <---------ALFIN1                          <---------ARR14(2)                       --------->MYB46(3)                   <---------ZAT14                           <------NtERF2  --------->ARR14(2)      -                   --------->ZAT14                          <---------ATERF1(1)                ------                 --------->ETT(2)                           ------>NtERF2   <---------ARR14(2) ======                 <---------ETT(2)                           <---------At4g35610                ======               ------>NtERF2------>ZmHOX2a(2)              <---------DEAR3(1)              --------->ARR14(2)             <---------ANAC58                <----------DOF2--------->At4g35610 ------>ZmHOX2a(1) ---             <---------ANAC58         <---------STY1(1)   <------NtERF2  --------->LBD16   <---------ARR14(2) -----YAB1  <---------At4g35610       --------->STY1(1) <---------DEAR3(1) <---------GLK1(2) --------   caattctcaagttttgctggctacagtggatctgaaaaccctaggctctttaaaactctcggcgctgcaaacaccccgattcctcacagaaggaatcctg  13455000              ------>ZmHOX2a(2)             <------ZmHOX2a(2)            <---------AGP1            --------->ARR14(3)            <---------ARR11(3)            --------->AGP1            --------->ARR11(3)            <---------ARR14(3)     <----------ID1   ---------->DOF2          <-----------RAV1(1)  --------->MYB52(1)     <<<<<<<<<WRKY18   ----------->RAV1(2)                   --------->YAB1  ---------->DOF2      --------->TOE2(3)   --------->O2            ----------->GT1 -------->TOE2(3)--------->ATHB12          <---------ZAT2          --------->At4g35610 >ZmHOX2a(1)<---------ARR14(2)             <---------At4g35610    --------->ANAC58 ====================HOX2a_HOX2a          ------>NtERF2 --------->ATHB12   --------->ANAC58 ===================HOX2a_HOX2a          <---------ALFIN1         --------->ANAC58   <---------ZAT18 ---->TEIL----------->ARR10 ===========================RAV<---------WOX13(1)   <-----------HVH21 --->RAV1(2)--------->ARR14(2)   <---------ANAC46      <---------YAB1      --------->ANAC58    <-----   aacctaaaggccaagatcttgatttcgtcaatgttgctcatagccacctgattcaatctgattgggataagctaaataagctatcagaccacttggattc  13455100  Previous    Next  AGI:  At4g26675.1    Description:  pre-tRNA. tRNA-Ala (anticodon: AGC) Range:  from: 13454563    to: 13454635    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g26680.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G05670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41185.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 13454859    to: 13456636    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version