Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         <-----------RAV1(1)                                                                 ------>ZmHOX2a(2)                                                                --------->At4g35610                                                                --------->GLK1(1)                                                               --------->ARR11(3)                                                               --------->ARR14(3)                                                               <---------ARR14(3)                                                               --------->GLK1(2)                                                               <---------ARR11(3)                                                               <---------ARR14(2)                                           --------->At4g35610 --------->ARR14(2)                                           <---------At4g35610 <---------AGP1 ------>NtERF2           --------->ANAC58     --------->ANAC58               <-----------ARR10           --------->ANAC58     --------->ANAC58              <---------GLK1(2)           --------->ANAC46   ---------->DOF2                 <------ZmHOX2a(1) ------>DOF2                 <---------ATHB12    ----------->GT1<------ZmHOX2a(2)                   - ----MYB52(2)          <----------ID1--------->ICU4        <---------LBD16    <---------RAP2.6(3)<---   aaagagcaaacacaagacagaaatagggacaatgaagcaatacttagcagagagtaaattaccaggatctgcattgttgcagccatggtacaaagatgag  13451700                                        <---------MYB52(1)                                       <-----------HVH21                                    --------->ZAT2                                    <---------At4g35610                                    --------->At4g35610                       <---------ZAT14                                    <---------ZAT2                    <---------ANAC58       <-------TEIL                                   <---------ARR14(2)                 <---------ANAC58    <---------At4g35610         <----------ID1        <---------LBD16                        <---------ANAC46    --------->At4g35610 -------->At4g35610--------->YAB1  --------->ARR14(2)       <------ZmHOX2a(1) <---------At4g35610 ---ZmHOX2a(1)<---------ANAC55(2)--------->LBD16        <---------TOE1(1)     --------->At4g35610   gaagatgaaatagaacaagtatcagaacatgaaaccggagctgtcagtttcgatgactacgaggatgatcaggcttggagagcagagtttggagctacat  13451800                                                                   ------>ZmHOX2a(1)                                               <-----------HVH21  --------->TOE2(3)                                           <---------LBD16      ------>ZmHOX2a(1)                                      --------->HSFC1(2)      ------>ZmHOX2a(2)                    --                   <----------DOF2    --------->HSFB2a(1)   <---------ARR11(3)         <---------YAB1        <---------ICU4                <---------HSFC1(2)    --------->ARR11(3)      <---------MYB52(1)        --------->AtMYB61         --------->MYB46(3)       --------->YAB1         <---------ZAT6 <---     --------->AtMYB61          --------->MYB52(1)        <---------YAB1  <----------DOF2<----------DOF2   atcaagaccaccattactagtctttgtttcagacaaacgacccttctcgggtcatttactatgatcctccttagtacttttgtactgttatctttcattt  13451900                    <---------ICU4                    --------->ATHB12                    -------->ATHB1                    --------->ATHB51                   <---------YAB1                   --------->ICU4                  <------MYB46(1)            <---------At4g35610                    <------MYB83                     <----------DOF2           ------->TEIL                     <-----------GT1                        <---------ICU4           <---------ARR14(2)         --------->ARR11(3)                  <---------WOX13(1)           --------->ARR14(2)----------->GT1--------->MYB52(1)          --------->ATHB12  ------>ZmHOX2a(1)          <---------CCA1(2)--------->MYB46(3)  <---------MYB46(3)      <---------YAB1     --------->LBD16 -------->ID1      <---------ATHB51   <---------ARR11(3)               --------->ICU4   <---------LBD16 --------RAV1(1)------------>ATHB5---------->DOF2<--------P   <-----------GT1  <-------TEIL  --------   tgttgttctattgtatctgccattattgaaccgctaaaaagatttgtaacggttggaaacatttttacatgtattgattgattcatcttttcctgaattc  13452000                                                                           --------->TOE2(3)                                         --------->ARR11(3)               ----------->GT1           -                                         <---------ARR11(3)          --------->YAB1                 -                                       --------->ANAC58              -------->HAHB4                 -                     --------->GLK1(1) --------->ANAC58             <---------YAB1                  -         <---------HSFB2a(2)        --------->LBD16                <---------TOE2(3)                -         --------->HSFB2a(2)       --------->ANAC46        --------->GLK1(2)             --------->AHL20(2)        <---------LBD16         --------->ARR14(2)     ------------>CBF  <---------TOE2(3)<---------AHL20(2) ->GLK1(1)--------->LBD16 --------->MYB52(1)    <---------ZAT6  <---------MYB52(1)      ----------->TBP   cagtgaaattcccagaagaacagaaatctaactgaaaccgcaagaacttactgtaagcccaattctgttaatgataatgttaaatgggctataaaatgag  13452100              <---------ZAT14              --------->ZAT14           <---------At4g35610           --------->At4g35610                               <----------DOF2          --------->DEAR3(1)                              <---------AHL20(1)        --------->At4g35610                               --------->ARR11(3)        <---------At4g35610                               --------->AHL20(1)      --------->MYB46(3)                                  <---------ARR11(3)     <---------At4g35610                                 --------->RVE1(1)     --------->At4g35610                           ----------->GT1 <-----------HVH21                               --------->LBD16                                   <- <-----------TGA1                                <---------LBD16                                   <- -------->ANAC58          ------->TEIL          --------->HSFB2a(2)                               --- -------->ANAC46       --------->ANAC58         <---------HSFB2a(2)                               <-- -------->bZIP60(2)    --------->ANAC58        <---------LBD16           --------->ZAT6          <--- -------->O2<----------CDC5                   ----------->RAV1(2)      <-----------GT1          ----- -------->ANAC58       *TSS         --------->ARR14(2)   --------->CCA1(1)                   --------   ccccgtcatcagccgctgaagtgaaacgcatcgtttagtatcgtcgtcttctggggaaaatatctttttttttaaacactatcaattcgactggaaaaag  13452200            <------MYB83            <------MYB46(1)           --------->MYB111(1)                                          <---------GLK1(2)           --------->MYB46(2)                                      <---------SPL7      --------->LBD16                                            --------->ATERF1(1)     <---------HSFB2a(2)                                         --------->RAP2.3(1)     --------->HSFB2a(2)                                         <------NtERF2     <---------------AGL15                                      <---------ATERF1(1)     --------------->AGL15                                      <---------ORA47(2)    ----------------->AGL1                                      <---------ERF1    <-----------------AGL1                                      <---------RAP2.3(1)    ----------------->AGL3                                      ------>NtERF2    <-----------------AG                                       <---------DEAR3(1)    <-----------------AGL2                                     <---------DREB2C(2)  <-----------GT1                                              <---------RRTF1(2) --------CCA1(1)                                               <---------RRTF1(3) --------RVE1(1)                                               <---------RAP2.3(3) ------>ARR11(3)                                               --------->ATERF1(2) -------ARR11(3)                                               <---------ANAC46 ---ZmHOX2a(1)                                                 <---------ATERF1(2) ------>GT1--------->MYB59        <----------DOF2              <---------RAP2.6(2) -->DOF2<---------GLK1(2)  ---------->DOF2     <---------ZAT14 <---------RAP2.3(2)              <----   gatatttccagattaggtagagagagagcaaaagtactttcattcagacttcagtttaagctatggcggcgaacgattcttcaaatgctattgacatcga  13452300                               --------->MYB52(1)                              ----------->TGA1                              ----------->HVH21                           --------->ZAT6                      --------->TOE2(3)                      --------->TOE1(3)                      --------->YAB1                         ------>ZmHOX2a(1)                    <---------ARR11(1)                 -------->HAHB4                    --------->ARR14(2)                 <---------ICU4                    ------->TEIL                       <--------ATHB1              <---------ARR14(2)    ----------->TGA1   --------->ATHB12  <---------ARR14(2)<-----------ARR10                 --------->ICU4  --------->GLK1(2) --------->GLK1(2)               --------->YAB1                       <-----------RAV1(2) --------->GLK1(1)  <---------ARR14(2)      ----------->HVH21--------->HSFB2a(2)         <---------ALFIN1 <---------GLK1(2) <---------CCA1(2)----------->HVH21 <---------YAB1                 <---------ZAT2 <---------GLK1(1) <---------ARR14(1)      --------->DEAR3(2)<---------HSFB2a(2)     --------->ZAT2-- -----LBD16   --------->ARR14(2) <---------DEAR3(1) <---------ICU4      <---------MYB46(3)     <-----   cgggaatctcgactccgattcgaatcttaacactgacggtgacgaagcgaccgataatgattcctcgaaggcattggttactatccctgctccagccgtt  13452400                                  --------->RAP2.3(1)                                  <------NtERF2                                 ------>NtERF2                                 <---------RAP2.3(1)                                <---------PCF2                                <---------ANAC46                                <---------DEAR3(1)                               <---------ABI4(2)                               --------->RAP2.3(1)                               <------NtERF2                               --------->ATERF1(1)                              <---------ERF1                              <---------ATERF1(1)                         <---------ANAC46                  --------->GLK1(1) <---------RAP2.6(3)                  <---------GLK1(1) <-------GAMYB                  <---------At4g35610                 --------->ARR14(2) <-----------HVH21               --------->LBD16<---------RAP2.3(1)          --------->SPL7<---------At4g35610         --------->ARR14(2)  <---------RAP2.3(3)        <---------MYB52(1)<-----------RAV1(1)              <-----------RAV1(1)                     <-       --------->LBD16  <---------ZAT2                   --------->CCA1(2)                         <-     <---------LBD16--------->GLK1(2)<---------MYB52(1) <---------ARR14(2)                      <---- <----------DOF2<------NtERF2<---------DEAR3(1)         --------->ARR14(2)                      <---- -------->ID1 --------->DEAR3(1)--------->DEAR3(1)  <---------LBD16      <----------DOF2        <---- ----MYB52(1)<---------LBD16 --------->ALFIN1<----------DOF2   <---------ZAT18                 ------   tgtcttttccggttcgccggagatgctgctggtggcgccgttatgggctctatcttcggatatggtgctcttcttctttctattttgtttcttctattgc  13452500      <---------At4g35610 -----MYB83                   ----------->GT1 -----MYB46(1)            <---------YAB1 -----ANAC58              ----------->HVH21                       <-----------GT1 -----ANAC58     <----------DOF2                    --------->ANAC58 -----ANAC46    <---------ANAC58                    --------->ANAC58   <----------DOF2 --->ATHB12     <---------ANAC58         <---------ICU4        --------------->AtSPL8   ttggttttatctgctattgctttactctctgatagtgaattgagaattactggcaaacaattgagtttgtactcttttcttcatttaagttgatttcaaa  13452600  Previous    Next  AGI:  At4g26660.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G55520.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G55520.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO38858.1); contains InterPro domain Kinesin-related (InterPro:IPR010544) Range:  from: 13448690    to: 13452022    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g26670.1    Description:  mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein. similar to P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] (TAIR:AT5G55510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38859.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397) Range:  from: 13452123    to: 13453990    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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