Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                 ----                                                                                                <<<<<                                                                                    --------->ARR14(3)                                                                                    <-----------ARR10                                                                                    <---------ARR14(3)      <---------AtLEC2                                                              --------->GLK1(2)     <---------ZAT14                                       <----------DOF2          --------->ARR11(3)     --------->ZAT14                                    <---------ARR11(3)          <---------ARR14(2)    --------->ALFIN1          <---------ANAC58          --------->ARR11(3)          <---------ARR11(3) ------->ICU4                 <---------ANAC58       --------->YAB1                 --------->ARR14(2) -->ANAC58                  --------->GLK1(2)       <---------YAB1  --------->AHL20(2)          <---- -->ANAC58          <----------DOF2               --------->YAB1    <---------AHL20(2)          <<<<<   aataatgtgcagggattcagaactttggaaattcttgtgagtttttttaaaattataagaactttggaaattaaactttagaagaaaatcttcatacaat  13444500                         <---------HSFB2a(2)                                                     <---       <---------At4g35610                                                                      -----       --------->At4g35610     ------------------------>ANAC81                                  <---- -------->AHL20(2)     <---------REM1(1)                                                    --------- ----->YAB1        --------->DAG2                                   --------->AHL20(1)      <-------- <<<<ARR1  --------->REM1(1)  <----------ID1           <---------ZAT6               <----------DOF2 -----ATHB12      ---------->DOF2              --------->YAB1       --------->AHL20(2)     --------->YAB1 <<<<ARR2  <---------YAB1--------->HSFB2a(2)   --------->AHL20(2)   <---------AHL20(2)    <---------YAB1   cataaattcagctacaattgaaaagttgtagaagaacaaaaatagacaatgaaattagtgtttcttcaaataaaatggaacattttcttttgatgatatt  13444600     <----------DOF2 ------AHL20(2)                                   --------->HSFC1(1) ---->AHL20(2)           --------->YAB1           <---------HSFC1(1)    <---------AHL20(2) -----AHL20(2)    <---------YAB1     <-----------GT1          --------->AHL20(2)       ----------->GT1 >ARR11(3)  --------->DAG2  <---------AHL20(2)    <---------HSFB2a(2)  --------->AHL20(2)    <------- -ARR11(3) ---------->DOF2  --------->AHL20(2)    --------->HSFB2a(2)  <---------AHL20(2)    --------   aattagcctttagaaaagttgtgatactcataaattgaattactcattttttctagagactccataaattgaatttaatctcataagaaatgtaaaatct  13444700                                       ----------->GT1                                     ---------->DOF2                           --------->ATHB51                       <---------AHL20(2)                           -------->ATHB1                        --------->AHL20(1)                           --------->ATHB12                      <---------AHL20(1)                           <---------ICU4                       <---------AHL20(2)                          <---------ATHB51                  ----------->TBP                       ---                          <---------AHL20(2)               --------->ARR11(3)                  ------                          --------->ICU4                   <---------ARR11(3)                --------                          --------->AHL20(2)             ------->TEIL                    --------->AHL20(2)                       --------->AHL20(1)           <---------At4g35610                  <---------AHL20(2)                       --------->AHL20(2)     -------->ATHB1--------->AHL20(2)          --------->AHL20(2)                       <---------AHL20(2)     --------->ATHB51--------->AHL20(2)    <---------AHL20(2)                       <---------AHL20(1)     --------->ATHB12<-----------TBP      --------->AHL20(2)                      --------->AHL20(2)     --------->ICU4<---------AHL20(1)      <---------AHL20(2) --ARR11(3)           <---------AHL20(2)     <---------ATHB51 <---------AHL20(2)   <---------AHL20(1) ->ARR11(3)     --------->YAB1 <---------MYB46(3)   --------->At4g35610            --------->AHL20(1)   atttttcaattgtttttatcacaaataaattattggttagaaagtgaattattgagatgaatatatatatatttgtgggaaaaaataaaatttaaaaata  13444800                                                                ---------->DOF2                                                        *TSS--------->YAB1                                                       ------->GAMYB                                                       --------->TOE2(3)                                                       --------->TOE1(3)                                                    ------->GAMYB   <---------GLK1(2)         <------           --------->At4g35610                     <---------MYB111(1)          ---------->DOF2    --------->At4g35610           --------->ATERF1(1)-------->P--------->AHL20(2)            <------- ------->DOF2        --------->At4g35610           --------->MYB46(3)         --------->AtMYB61 ----- --->AHL20(2)        <---------At4g35610           <---------MYB111(2)     --------->ZAT6--------->ANAC58 ->YAB1  --------->YAB1    <----------DOF2         <---------MYB55(2)--------->GLK1(2)   --------->ANAC58   aaaaggagctatcatcttccatcatctgtctttagggcctccctctaagtctaacaaccctaaaataaaagattctaacaccaaaagagagaagcaaatc  13444900                                                                                                  <--                                                    XXXXXXXXXXXXXXXXXXXXX>MIR853                  ---                       ----------->HVH21          <-----------------AGL1                          <--                 --------->AHL20(2)     <-----------GT1     <---------ANAC46                     ----                <---------YAB1        <-----------GT1       <---------ANAC58                  <------ <---------GLK1(2)<---------AHL20(2)<------------------------ANAC81                           ------- ---ARR14(2)  <--------HAHB4  <---------MYB46(3) <---------At5g28300                      <---------- --CCA1(2)    --------->YAB1<-------GAMYB    <----------DOF2<---------ANAC58        ------>ZmHOX2a(1) ---->TOE2(3)<---------YAB1<-----------RAV1(1)  <-----------GT1           ---------->DOF2 <----------   tcaaattcttcccctattattatatgtgactgttgttgtttttctctcttttaccatctttggcctgaagaaaaaaaaaaggaatccttcttaatggatt  13445000      --------->WOX13(1)    <---------ATHB12  --------->WOX13(1) ----MYB46(1) -------->GT1 ----MYB83 <---------YAB1                     --------->AHL20(2) ----->MYB59                          ---------->DOF2    --------->ATHB12          ---------->DOF2 ---ARR14(2)            --------->ANAC46      <---------AHL20(2)              ----------->GT1 -->ARR14(2)     <---------ICU4  ---------->DOF2        <-------TEIL   --------->CCA1(2) -------AG <---------TOE2(3)  --------->AHL20(2)--------->YAB1        --------->ARR11(3) -------AGL1 ---------->DOF2 --------->AHL20(2)<---------AHL20(2)     <---------ARR11(3)   tggtaaatcaattaagaaagcattacacaaaataaaaaaggaaagttttttaataagcttcattgagagagagatatagagagagaaaagagagagaggc  13445100                                      ---------->DOF2                                 ------------------------>ANAC81                       --------------->AGL15                             --------->HSFB2a(2)                       <---------------AGL15                         <---------ANAC46                >>>>>>>>>TBF1   ---------->DOF2                  ------->TEIL     --------->YAB1   ----------------->AGL3               <---------MYB46(3)    <---------YAB1    ----------------->AGL2              --------->ALFIN1                  ------>ZmHOX2a(1)   catattttgataagagaagaagaacccttatagagaaagagaaagagagagacagagagagtggatggatgtcttatagaatgaacaaaacatcctctgt  13445200                        <---------ARR14(3)                        <---------ARR11(3)                        --------->ARR11(3)                        --------->ARR14(3)                        --------->ARR14(2)                        <-----------ARR10                        --------->AGP1                        <---------AGP1                     --------->HSFB2a(2)               <----------DOF2<---------TOE1(3)               <---------DAG2 <---------TOE2(3)           ---------->ID1 ------>ZmHOX2a(2)        =========================HOX2a_HOX2a               ------>ZmHOX2a(1) <-----------GT1        ------>ZmHOX2a(1)<------ZmHOX2a(2)             --------->ARR14(2) <---------ARR14(2)        ========================HOX2a_HOX2a       ----------->RAV1(2)     --------->ARR14(2)       <---------ANAC58 <---------ARR14(2)        --------->At4g35610----------->GT1            <----       <---------ANAC58<---------CCA1(2)     <-----------GT1    ------>ZmHOX2a(1)   <----------DOF2     ---------->ID1  <---------HSFB2a(2)    <---------AHL20(2) --------->TOE2(3)   <---------ICU4   ttctcttgtccttgtccctttttccagatcttaaggttttccacattttatcatctgggtcctctccttaatggtgaattctccatctttacaagtttga  13445300                            <-----------GT1          <---------At4g35610                   <---------ANAC46                  --------->At4g35610                   <---------ANAC58       --------->ARR11(3)                   <---------ANAC58       <---------AHL20(1)     <---------MYB52(1)             <---------ARR14(2)           --------->AHL20(1)   <---------ANAC58       <XXXXXXXXXXXXXX             --------->ARR14(2)         --------->AHL20(1)     <---------ANAC58  <---------WOX13(1) -----TOE2(3)--------->GLK1(2)          <---------AHL20(1)   <-----------GT1   --------->ATHB12     <   tgtttttgttcatcaaatctggcgtttttttttctcttctaatatatattgtctctgctcattttccgtttctcttcccattgattgttctgtttcattt  13445400  Previous    Next  AGI:  At4g26650.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G55550.2); similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G55550.3); similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G55550.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38854.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 13444856    to: 13448218    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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