Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    --------->LBD16                                          <xxxxxxxxxxxxxxxxsmallRNA(i)                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                       --------->DAG2                                        <-------                                      ---------->DOF2                                        --------                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      --------                          --------->TOE2(3)   <---------ARR14(2)                             <-------                         <---------ANAC55(2)  --------->ARR14(2)                            ---------                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                     --------->YAB1                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                      <---------ICU4                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                    --------->AHL20(2)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <---------TOE2(3)          <---------AHL20(2)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------AHL20(2)        --------->AHL20(1)                 --------->LBD16  --------->LBD16<---------ANAC55(2)             --------->YAB1 -----                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------AHL20(1)      <---------AHL20(2)                 ------>NtERF2   ----------->GT1 --------->ANAC55(2)            --------->AHL20(2)  -                --------->ANAC46 --------->ANAC46----------->GT1      --------->YAB1--------->YAB1 <-                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     --------->AHL20(1)     --------->AHL20(2)<---               <---------LBD16   <---------ANAC55(2)    --------->AHL20(2)  --------->AHL20(2)  <----             <-----------GT1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------YAB1 --------->AHL20(2)       <xxxxxxxxxxxxxxxxsmallRNA(s)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->ICU4 --------->YAB1    --------->TOE2(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->ICU4xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    --------->TOE1(2) <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------AHL20(2)<---------ICU4--------->TOE2(3)   cataaacctgtgatttttccgccaaaaacgtaaacccgtaaaaagtggaatccgtaaatattttaagtttgatgataatgaattaataatattaattatt  13419200                                                                                                 ----                                                                                                 ----                                                                                            <--------                                                                                           --------->WRKY12                                                                                           xxxxxxxxxx                                                                                           ----------                                                                                           --------->WRKY45                                                                                           --------->WRKY38(1)                                                                                          xxxxxxxxxxx                                                                                         <---------ANAC58                                                                                         <---------ANAC58                                                                                       <xxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    --------->CCA1(2)                                                                                   xxxxxxxxxxxxxxx>smallRNA(le3)                             <---------ICU4                                       xxxxxxxxxxxxxxxx>smallRNA(s)                             -------->ATHB1                                    xxxxxxxxxxxxxxxxxxxxxx                             --------->YAB1                                    xxxxxxxxxxxxxxxxxxxxxx                            --------->ICU4                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         --------->AHL20(2)                                    xxxxxxxxxxxxxxxxxxxxxx                         <---------AHL20(2)                                    xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    --------->AHL20(1)                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    --------->AHL20(2)                                      <---------AHL20(2) <-----                    <---------AHL20(1)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    <---------AHL20(2)                                     --------->AHL20(2)  ------                 -------->HAHB4                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 <--------HAHB4                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 <--------ATHB1                                            <---------AHL20(2) -------                 --------->YAB1                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 <---------ICU4                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 --------->ATHB51                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                --------->ICU4      --------->AHL20(2)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --ICU4         <---------YAB1 <---------YAB1                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ->ATHB51 <---------YAB1--------->AHL20(2)                             <xxxxxxxxxxxxxxxxsmallRNA(i) ->AHL20(2)  <---------YAB1 <---------ATHB51                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --AHL20(2)--------->YAB1--------->AHL20(1)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) >ICU4  --------->YAB1  <---------AHL20(2)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---->AHL20(2)<---------ICU4xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -------->ATHB51--------->AHL20(2)  <---------AHL20(2)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------YAB1--------->ICU4 <---------AHL20(2)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------AHL20(2) <---------ATHB51--------->AHL20(2)                 --------->WOX13(1)<XXXXXXXXXXXXXXX -----AHL20(2)--------->YAB1--------->AHL20(2)         <-----------GT1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   tattattgttttataataataattaattaaattattatttaaatgggttaacccatttaacaattcaatccatcaaattaaatgagttatgggttgaccc  13419300      <-----------GT1 -->MYB83 -->MYB46(1) -WRKY18(1) xxxxxxxxxxxx>smallRNA(fl3) ->HVH21 xxxxx>smallRNA(i) xxxsmallRNA(s) xsmallRNA(fl3) >smallRNA(le3) x>smallRNA(se3) x>smallRNA(si3)                                                               <-----------GT1 ----MYB59                                                              --------->TOE2(3) --->MYB46(3)                                                    --------->ANAC58                 <-- -->ANAC46                                                       --------->ANAC58            <------- XXXXXXXXMIR405A/B/D  <---------AHL20(2)     ----------------->AGL1   <-------TEIL     <---------AHL20(2)   aactcatttaacatctaaacttatttgattaagagttgagttggattacccattttgaaacccctaaacgcatacatcaaataacttattgaattatgtt  13419400                                <---------AHL20(2)                               --------->AHL20(1)                               <---------AHL20(2)                               <---------AHL20(1)                               --------->AHL20(2)                    <---------MYB52(1) -------YAB1        <---------MYB46(3)<---------At4g35610    <---------ZAT14      <-----------HVH21 --YAB1   <---------YAB1    --------->AHL20(2)               --------->ZAT14 <---------ZAT6 <--------   tttataggttttatgaattcagtggctcgataatttattaggctgacaaaaaataagttcgactacagcccattagttagtattagtcaggcccattagt  13419500                                                                                                 ----                  --------->ANAC58                                                             <-----                  --------->ANAC46                                                             ------         --------->ANAC58                                                *TSS        --------->At4g35610         --------->ANAC58                                              -------->P--------->GLK1(2)       ---------->DOF2                                                 ------>MYB83  <---------At4g35610      <---------ATHB12                           <---------GLK1(2)     ------>MYB46(1)        -------    --------->WOX13(1)  <----------DOF2  <----------DOF2              ------>ZmHOX2a(1)      <-------  ------------>CBF--------->ANAC58      <---------ICU4         <---------ANAC58  --------->ARR14(2) -MYB52(1)      ---------->DOF2    ------>ZmHOX2a(1)           <---------ANAC58  <---------ARR14(2)<-   tagtatcaatcaagcccattaagcaactttgctcatcctccatctttactagattcttcgaccttgcttctcctacctctgcaattctgctaaaccctca  13419600                                                                                             <-------                                              --------->ANAC58                               --------                                       <----------DOF2                             <---------ALFIN1                           <---------ARR14(2) --------->ANAC46                   ------>NtERF2 ----->ANAC46              --------->ARR14(2) --------->ANAC58                   --------->LBD16 ----ALFIN1                <---------ARR11(1) --------->ANAC55(2)               --------->ANAC58 --->MYB52(1)             <---------CCA1(2)   --------->ANAC55(1)               --------->ANAC46 ---->HVH21          <-----------GT1 <---------At4g35610                        --------->ANAC58 ----HVH21     ----------->GT1     <---------RAP2.3(3)                        <---------ATERF1(1) --------------------WRI1 <---------ARR14(1)<---------ANAC46           <-----------GT1<---------ATHB12   cggcgataaaccctaagttgtaaaaaccgtatccatggctgctcttacgcgtaacaagaagaagggttccaattcacagactccgccactgaataagcag  13419700                        --------->At4g35610                        <------NtERF2                       ----------->GT1                       ------>NtERF2           <---------At4g35610           --------->At4g35610           --------->LBD16            <---------HSFB2a(1)       --------->ARR14(2)             --------->HSFB2a(1)       <---------ARR14(2)             <---------HSFC1(2)      --------->ATERF1(1)             --------->HSFC1(2)      <------NtERF2   <---------RAP2.3(2)                             <---------ANAC46     <---------ATERF1(1)<---------At4g35610                          <---------LBD16    <---------ANAC58  <---------DEAR3(1)                          ------->TEIL                     --    <---------ANAC58  <---------RAP2.6(2)                  <------ZmHOX2a(1)                       <- --At4g35610         --------->RAP2.6(3)                --------->At4g35610               --------->DAG2 ->At4g35610         --------->ATERF1(1)             --------->At4g35610                 ---------->DOF2   actaaggcgtctccgctgaagaaggcggctaaaacccagaagcctccattgaagaagcagaggaaatgtatttcggagaagaagcccctcaaaaagcctg  13419800                                                                   <---------YAB1                        >>>>>>>>>TBF1                           --------->GLK1(2)              <------ZmHOX2a(1)               <---------REM1(1) --------->ARR14(2)       --------->DEAR3(1)                   <---------At4g35610 <---------ARR14(2) ------->HSFC1(2)    >>>>>>>>>TBF1          --------->At4g35610<---------GLK1(2)               ------ --------HSFC1(2) >>>>>>>>>TBF1  <---------KAN4(2)          <-----------RAV1(2)----------->HVH21   aagtttccacagacgaggaagaagaagaagaagagaatgaacagtctgatgaagggtctgaatcaggttctgatttgttctctgatggtgatgaagaagg  13419900                         --------->YAB1    <XXXXXXXXXXXXXXXXXXXXMIR414                        <---------YAB1 --------->ICU4                      --------->YAB1 --------->YAB1                     <---------YAB1 --------->ICU4                     --------->ICU4 <---------YAB1                --------->YAB1 --------->YAB1 --------->YAB1               <---------YAB1 <---------YAB1 <---------YAB1               --------->ICU4 --------->ICU4 --------->ICU4             --------->YAB1 --------->YAB1 --------->YAB1             <XXXXXXXXXXXXXXXXXXXXMIR414--------->YAB1                <---------At4g35610            <---------YAB1 --------->ICU4 --------->ICU4           <---------MYB52(1)              --            --------->ICU4 <---------YAB1 <---------YAB1          --------->TOE1(3)     <---------MYB46(3)    <--------ATHB1 --------->YAB1 --------->YAB1       <------ZmHOX2a(1)       <----------DOF2   ----    --------->YAB1<---------YAB1 <---------YAB1 <---------YAB1<---------ARR14(2)   --------->HSFB2a(2)   <---------YAB1 --------->ICU4 --------->ICU4 --------->ICU4--------->ARR14(2)   <---------HSFB2a(2) ----->GT1--------->YAB1--------->ICU4 <---------YAB1<---------TOE2(3)--------->At4g35610       -----   aaacaatgatagtgatgatgatgatgatgatgatgatgatgatgatgatgatgatgaggatgcagaacccttagctgaagactttctcgatggtagcgat  13420000                                                             <---------GLK1(1)                                              ------>ZmHOX2a(2)                                             <------ZmHOX2a(2)                                            --------->ARR14(2)--------->ARR11(3)                  <--                                            <---------ARR14(2)--------->GLK1(2)               <------   <------ZmHOX2a(1)                      <---------MYB46(3) --------->GLK1(1)           ---------->DOF2 ------->ICU4               <---------GLK1(2)=====================HOX2a_HOX2a        --------->TOE2(3) ----->YAB1                 <---------ARR14(2)====================HOX2a_HOX2a       <---------ANAC55(2) ---->ICU4          <---------YAB1    <-----------RAV1(1)  <------ZmHOX2a(1)        ----------->GT1   aatgaggaggtaaccatgggttctgatttggattctgactctggtggatccaaactcgagaggaaatctagagctattgatagaaaacgtaaaaaggagg  13420100  Previous    Next  AGI:  At4g26600.1    Description:  nucleolar protein, putative. similar to nucleolar protein, putative [Arabidopsis thaliana] (TAIR:AT5G55920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45158.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71575.1); contains InterPro domain rRNA subunit methyltransferase (InterPro:IPR006174); contains InterPro domain Nop2p (InterPro:IPR011023); contains InterPro domain Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678) Range:  from: 13419573    to: 13423796    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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