Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 ==================HOX2a_HOX2a                                <--------                               =======================HOX2a_HOX2a                           ---------                               ------>ZmHOX2a(2)                                           <---------YAB1                          <---------WOX13(1)                                          <---------ANAC55(2)                        --------->ATHB12                                              --------->ANAC55(2)                 <---------ATHB12                                               <------ZmHOX2a(2)                --------->ARR14(2)                                             --------->ARR11(3)                <---------ARR14(2)             <----------DOF2                 <---------ARR11(3)               --------->WOX13(1)              ------>ZmHOX2a(1)      ----------->HVH21   --------->ARR11(3)  --------->TOE1(3)    <---------YAB1     ------>ZmHOX2a(1)<<<<<<<<<NAM    ---------->DOF2<---------ARR11(3)   caaaccttcagttttgccaatcttgttgattgatccaacaagtcctatccttttaaactcatcccttctggtctgacaaaagatcaatacatgatcatga  13261600                                                                                                 <---                                                                              <-------TEIL    <------                       --------->MYB46(3)                                 <---------------AtSPL8<----  --------->HSFB2a(2)<-----------GT1              <----------DOF2<---------ANAC58             ------- -ICU4    --------->ANAC58                   ---------->DOF2     <---------ANAC46           <-------- >YAB1    --------->ANAC58              --------->ZAT6           <---------ANAC58         <----------   gcttctataatccagcaattgtgtaaccaattcagaatacaaacactaaaagctttctaatttcgatgcttgaatttgagtacatgactcagagtcagag  13261700                                                  <------MYB83                                                  <------MYB46(1)                                              <---------MYB46(3)                                             <---------WOX13(1)                                           -------->HAHB4                                      ======                                           --------->ATHB12                                    <-----                                           <--------ATHB1                                     <------        --------->TOE2(3)                  <---------ICU4                                     <------     --------->WOX13(1)                    --------->YAB1                                    <-------   <---------ATHB12                       --------->ICU4                                   ========== ---ZmHOX2a(1)                            <---------YAB1           --------->TOE2(3)       ------->GAMYB ---At4g35610                           --------->YAB1             --------->YAB1         <---------DEAR3(1) ------ID1                              <---------ICU4           --------->GLK1(2)        --------->MYB46(3) -->At4g35610   --------->HSFB2a(2)    --------->ICU4           <---------GLK1(2)       --------->MYB52(1) ---RAV1(2)     <---------HSFB2a(2)  --------->ANAC46  <---------LBD16            --------->ALFIN1 -HVH21 --------->YAB1        <---------ICU4 <---------YAB1 ---------->DOF2     <---------ANAC46    <   gacaaatcaatcttagttctggtaatctagaatcaatacccataatgattgttggtacctggaaaagaatcttaattcgctcgagtggagcaacggcggt  13261800                        --------->ANAC58                       --------->RRTF1(2)                       --------->DEAR3(1)                       --------->RAP2.3(2)                       --------->RAP2.6(2)                       --------->ATERF1(2)                       --------->RAP2.3(3)                       --------->DREB2C(2)                       <---------ATERF1(2)                      --------->ORA47(2)                      --------->RRTF1(1)                      --------->RAP2.3(1)                      --------->ERF1                      <------NtERF2                      <---------LBD16                     --------->ABI4(1)                     ------>NtERF2                     <---------RAP2.3(1)                     <---------ATERF1(1)                    --------->RAP2.3(3)                    --------->RAP2.3(2)                    --------->DEAR3(1)                    <---------DEAR3(1)                    <---------ATERF1(2)                   --------->ATERF1(1)                   <------NtERF2                   --------->RAP2.6(1)                   --------->RAP2.3(1)                   --------->ORA47(2)                   --------->RRTF1(1)                   --------->ERF1                   --------->DEAR4(2)                  ------>NtERF2                  <---------RRTF1(1)                  <---------ATERF1(1)                  <---------RAP2.3(1)                 --------->bZIP60(1)                 <---------bZIP60(1)                 <---------bZIP60(2)                 <---------O2              ----------->TGA1              ----------->HVH21             <-----------HVH21             --------->LBD16            <---------TGA1a            --------->O2--------->ANAC58            <---------O2--------->LBD16                                                     ---------            --------->TGA1a                                                             --------->LBD16          ------>MYB46(1)                                             <---------MYB52(1)------>NtERF2          ------>MYB83--------->ATERF1(1)                      --------->ATHB51        --------->ANAC58        <---------ALFIN1------>NtERF2                          <---------ICU4          --------->ANAC58 =====================MYC_MYB                                  --------->YAB1          --------->DEAR3(1) --GAMYB--------->AtMYB61<------NtERF2                         <--------ATHB1          --------->ANAC46 ---DEAR3(2)--------->ANAC55(2)                               <---------ATHB51        --------->SPL7 ---MYB46(3)=============================================bZIP_DOF   <---------ANAC58 <---------ATERF1(1) --DEAR3(1) --------->ANAC46                    <---------TOE2(3)   <---------ANAC58--------->ANAC46 =====================MYC_MYB                 ---------->DOF2 <---------ATHB12     --------->MYB46(3) -----------GT1<---------ATERF1(1)   ------>ZmHOX2a(1)    <---------ATHB12      <-----------GT1   tttagctataccacccgtgacgccgccggcaataagctccttagcgaataaaggaatcgaatcaataattccgttcttctcttcaccctccgccatggaa  13261900                                    --------->ARR14(2)                                    ------->TEIL                                    --------->ARR11(3)                          ----------->GT1                       --------->CCA1(2)                       --------->ARR14(1)                      <---------ARR14(2)                                                <---------ATHB12                      --------->ARR11(1)           <----------DOF2                <---------At4g35610                      --------->ARR14(2)   <<<<<<<<<TBF1    <---------ATHB12      --------->At4g35610              ---------->DOF2       <---------ARR11(3)     ------>MYB83     <---------At4g35610     >    --------->ALFIN1----------->ARR10 ------>ZmHOX2a(2)    ------>MYB46(1)  --------->At4g35610  >>>> >AtLEC2 ----------->GT1<-------TEIL<---------ARR14(2)<-----------GT1   <---------REM1(1)  <---------TOE2(3)   atagaagtggagagagaaaagatagatacggtttaatggatcttcttcttctccttttaccaatctttgtacagttgaagctgaagctcaatgaaggaag  13262000               <---------YAB1              <---------AHL20(2)          <---------CCA1(1)         <---------ARR14(2)         <---------ARR11(3)                               --------->YAB1         --------->ARR11(3)                              <---------ATHB12                      ------   >>>>>>>>>TBF1           ----------->GT1   <----------DOF2---------->DOF2             <---------DAG2 >>>>>>>>TBF1 --------->AHL20(2) --------->MYB52(1)    --------->WOX13(1)            <-----------GT1 >>>>>TBF1<---------RVE1(1)<----------ID1   *TSS     ------------>CBF           <---------GLK1(2)   aagaagaagaagatattaaaattgagagagcgaaaaaacgaattgttcttttgtgatcaatcaaaagacttggtttctgtctgattctcaccttctcctc  13262100                                                        <---------AHL20(2)                                                       --------->AHL20(2)                                         --------->AHL20(2)                                         -                                         <---------AHL20(1)             <----------DOF2             -                                     <---------AHL20(2)<---------AHL20(2)     <---------DAG2       --                                  ----------->GT1 <---------YAB1      <---------At4g35610          --            <---------AHL20(2)<---------ZAT6 <---------ICU4   <---------AHL20(2)    --------->AHL20(2)         --------->ICU4--------->AHL20(2)<---------AHL20(2)  --------->AHL20(2)     <---------AHL20(2)    --------->AtLEC2  <---------MYB52(1) --------->AHL20(1)  <---------AHL20(2)     <---------AHL20(1) >ZmHOX2a(1)<---------YAB1 --------->ATHB12 --------->ICU4  --------->YAB1    <----------DOF2      <-   caagttatgcaaatattattctccattaattagtggaagttaattaattagtatgattttaattttaatttctgctttcgctttattttatttgtcttga  13262200          <------MYB46(1)          <------MYB83                                                                <-----------GT1         --------->MYB59                                                       ------->GAMYB         --------->MYB111(1)                                                  --------->MYB46(3)         --------->MYB46(2)                                                   <----------ID1 <-------TEIL   <----------DOF2                                               --------->ANAC46 -------->CCA1(2)            <---------YAB1                                 --------->MYB52(1) -------->ARR14(1)        ----------->HVH21                               <---------ATHB12       ---- ------->ARR11(1)         ----------->TGA1                               --------->ANAC58  --------->ARR14(2) ------->ARR14(2)   --------->AHL20(2)                ------->TEIL       --------->ANAC58  <---------ARR14(2) --------ARR14(2)   <---------AHL20(2)        --------->YAB1            --------->WOX13(1) --------->GLK1(2)   agattcgaagttaggttcctttttaaatgtgacgattagactctgaattgataatgtatttttgaacgagtaaacaatcaacgacaaattacaaatctga  13262300                                                                 <---------At4g35610                                               --------->WOX13(1)--------->At4g35610          <------                                            <---------ARR11(3)   <---------ZAT2               -------                                       <-------TEIL            --------->ZAT18         --------->ARR14(2)                                      --------->CCA1(2)    --------->DAG2              <---------ARR14(2)                                 --------->ANAC46         ---------->DOF2             <------ZmHOX2a(1)                                 --------->ANAC58   <---------TOE2(3)   <-----------GT1<---------ARR11(3) --->TEIL------->TEIL            --------->ANAC58 --------->YAB1 --------->ZAT2  ----------->RAV1(1)   atctaaaaatgtatcgacgctggtctcttcgaaacacgagatacaatatcaattaagatgtaaagtgagctgaattacacttccaacaggaacttcatct  13262400                                                                    ------>ZmHOX2a(1)                          --------->At4g35610            --------->At5g28300     <---------ANAC55(2)                        <---------ZAT18              --------->MYB52(1)          <---------ANAC58                <---------ANAC46                  --------->ANAC55(2)            <---------ANAC58          <---------ALFIN1<---------At4g35610   --------->AHL20(2)  <-----------RAV1(1) ---At4g35610   <---------ANAC58      --------->ETT(2)  ----------->GT1    <------ZmHOX2a(1)    ----- -->At4g35610   <---------ANAC58      <---------ETT(2) --------->ZAT6    <---------TOE2(3)  ---------   gtgtgtgcatcaacacttgcttgttgtgagctctagagagtcgacagcatttacataacagtaaaaactcctgttgaggaattacttatgtgcttcgacg  13262500  Previous    Next  AGI:  At4g26180.1    Description:  mitochondrial substrate carrier family protein. similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT1G14560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65383.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067) Range:  from: 13260070    to: 13262044    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g26190.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G36550.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62455.1); contains InterPro domain NLI interacting factor (InterPro:IPR004274) Range:  from: 13262245    to: 13266975    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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