Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      -------->HAHB4                                    --------->YAB1                      --------->ANAC46                      --------->ANAC58     <---------ARR11(3)             <---------ICU4                                                  -     <---------GLK1(2)--------->ANAC58    --------------->AtSPL8                               ------     --------->ARR11(3)      ----------->GT1                            ------>MYB46(1) --------->AHL20(2) -->AHL20(2)     <---------ZAT18   --------->ICU4                       ------>MYB83    <---------AHL20(2) ---AHL20(2)     --------->ZAT18   <---------ATHB51          ------->TEIL <---------ATHB12     <----- ->AHL20(2)   --------->MYB52(2) --------->YAB1             <---------CCA1(2)          --------->AHL20(2)   ttgtatagatttttgttagtgagcaagacacttgttaataatgctatgtactacatatatatgtatctttcaccaaatcagtttttcaaatttataaaca  13252800       --------->ICU4  ----------->GT1 --------->DAG2                         --------->YAB1                   <----------DOF2 --------->DOF2        --------->AHL20(2)  <-----------GT1             ---------->ID1 --->YAB1     ------->TEIL          --------->AHL20(2)                <-----------GT1 ----------AGL15  --------->LBD16 ----------->GT1             <----------DOF2   taaaaagtaagaattgaacccccaaaaaaatacaagaagtaaatataactaaacttctattcttcttttttttttcttttttgttgaagaaatggtattt  13252900                                                                                         --------->YAB1                                                                                         --------->MYB52(1)                                                              ----------->GT1            <---------ICU4                        <---------ANAC58                    <------------CBF            <---------AHL20(2)                  <----------DOF2                  <---------GLK1(2)                    <---------ATHB51                ---------->ID1      <----------DOF2--------->ARR11(3)    --------->TOE2(3)               <-----------GT1<-----------GT1      <---------ARR11(3)  <-------TEIL --------->AHL20(2)   --------->TOE2(3)    <---------ANAC58      --------->TOE2(3)   ----------->TBP----------->GT1  <--   gtatttcttaatttgtttttctttttgcttaataacttcttttttatacattagatttttgatattgtatatatacatcaaacaagttaaataatggttt  13253000                                                                                                    <                                                                                                  <--                                                                                                  <--                                    ----------->GT1                                               ---                           --------->ZAT6                                                         ---                         <-----------GT1                                                         ----                    ------>ZmHOX2a(1)                               --------->ANAC46     <-------PIF5    --------->ARR14(2)  --------->AHL20(2)                       --------->ARR14(2)      ------->PIF5 ---------GT1<---------GLK1(2)      <---------ZAT6<-----------TBP<---------ARR14(2)  <---------At4g35610   tatccatattttctaaattctcctaattaactctactagagttaatatgtgtgtatatagtcacacatatacacaaacatttgtttctgctcgtggtcta  13253100                                              <-----------GT1                                            <----------DOF2                                         ==========================HOX2a_HOX2a                                         ------>ZmHOX2a(1)                                       --------->HSFB2a(1)                                       --------->HSFC1(2)                                       ------>ZmHOX2a(2)               <----------ID1          ==================================HOX2a_HOX2a           ---------->DOF2             <---------HSFC1(2)      <----------DOF2                  <---------HSFB2a(1)     <---------DAG2                   <------ZmHOX2a(2)     =============HOX2a_HOX2a ------------CBF                <---------ANAC58            ------>ZmHOX2a(2) -------ARR11(3)                <---------ANAC58<---------ANAC58 -------AHL20(1)      --------->YAB1  ===================================HOX2a_HOX2a ------>AHL20(1) --------->WRKY18(1) --------->ARR14(2)    --------->GLK1(1) ------>ARR11(3)<-----------HVH21    <---------ARR14(2)   <---------ARR11(3)                   <----- ------->TBP   ----------->GT1  <---------ANAC46<---------ANAC58  ------>ZmHOX2a(1)    <----------DOF2   tatattgccttttaaaagggtcaaacatagtatagcttggatccttctttacttgtccctgatctctcctaatctctcgtcttccctctcttttgtgctt  13253200                                                        <------ZmHOX2a(2)                                                       <---------ARR11(3)                                                       --------->ARR11(3)                                                   --------->YAB1                                                  <---------ATHB12                                             ------>ZmHOX2a(2)                               ------>ZmHOX2a(1)                                            <------ZmHOX2a(2)               ---------->ID1 ------>ZmHOX2a(2)             --------->WRKY18(1)           --------->ARR11(3)              <-----------GT1<------ZmHOX2a(2)    ------>ZmHOX2a(2)       <-----------GT1<---------ARR11(3)          <----------DOF2   --------->ARR14(2) -----DOF2  <-----------HVH21<---------YAB1<---------AGP1             <---------DAG2     <---------ARR14(2)   catcgatctctatcggtcatgggttccaattttcattacacaatagatctcaatgaagatcaaaaccatcagccttttttcgcttctcttggatcctctc  13253300                                                                                            ------>ZmHOX2a(1)                                                                                   <---------CCA1(2)                                                                                 --------->DEAR3(1)                                                                               <---------At5g28300                                                                              <-----------GT1                                                  --------->HSFC1(2)         ----------->HVH21                                                  <---------HSFC1(2)        <-----------HVH21<-------           --------->REM1(1)                     ------>MYB83              --------->bZIP60(1)       --------->At4g35610                       ------>MYB46(1)           <---------bZIP60(1) <-----  <---------ICU4                         --------->YAB1               <----------DOF2  <----------DOF2  --------->YAB1                 ----------->RAV1(1)                  --------------------->WRI1    <   ttcatcatcatctacaacaacaacaacaacaacaacaacattttcatcaccaagcttcttctaatccctcttctttgatgtcaccgtctctttcctactt  13253400                                                 --------->YAB1                                              --------->YAB1                                           ----------->RAV1(1)                                      <------MYB46(1)                                      <---------ANAC46                                      ---------                                      <---------ANAC58                                      <--------                                      <------MYB83 --------->ZAT6                       --------->MYB46(3)                                      <---------ANAC58                                 ------>MYB46(1)                                     <---------MYB46(3)                                -------->P                                     --------------->AtSPL8                            ------>MYB83                                     --------->MYB59                                  <---------ALFIN1                                     <---------------AtSPL8                    <---------ARR14(2)   <---------ANAC58     <------ZmHOX2a(2) --------->REM1(1)                    <---------ARR11(3)   <---------ANAC58    <---------ARR11(3)--------->SPL7                        --------->ARR11(3) --TOE1(2)             --------->ARR11(3)<-------TEIL     --------->YAB1       <---------ARR11(1) -----DOF2      --------->ANAC58    <---------ANAC46  <---------DAG2           --------->ARR14(2) ----------DOF2 --------->ANAC58 <-----------RAV1(1)  <----------DOF2         <---------CCA1(2)   tcctttcttgataaactctcgccaagatcaagtatatgttgggtacaacaataacacttttcatgatgttcttgatacccatatctcccaacctctcgag  13253500                                           ------>ZmHOX2a(1)                                          --------->TOE2(3)                                        <-                                         ------>ZmHOX2a(2)                                      -----                                       <---------ARR11(3)                                     <------                               <-----------GT1                                               <-------                          <---------AHL20(2)                                                 ------->TEIL                          --------->AHL20(2)                                                 --------                          <---------ARR11(3)                                                <--------          <---------ATHB12<---------AHL20(1)                  <-------TEIL              <----------DOF2 >HSFB2a(2)               --------->ARR11(3)         ----------->GT1                 --------->ARR11(3) -HSFB2a(2)  ------->TEIL --------->AHL20(1)    <---------AHL20(2)  ----------->GT1  <---------ARR11(3)   gtataatttcaaatgaatttcatgtcaatatattaactcttgatccttatatatatggtttatattcatatggaaatttcagaccaagaactttgtatct  13253600                                                                                                    -                                                                                                -----                                                                                         ------>MYB83                                                                                         ------>MYB46(1)          <---------ICU4                                                                 --------->MYB52(1)      <-------TEIL                                                                     <---------MYB59   <---------MYB46(3)         ----------------->AGL1                             <---------ICU4====== --------AtMYB61             ------>NtERF2                                    <---------ICU4   <----- ------>HVH21                --------->ZAT18                             <---------ARR11(3)   ------- ---At4g35610                <---------ZAT18                             --------->ARR11(3)   ------- --ARR14(2)    <---------ANAC55(2)           --------->ANAC58           --------->YAB1 --------->AtMYB61 ->ARR14(2)    --------->ANAC55(2)     <------ZmHOX2a(1) <---------TOE2(3)    --------->YAB1  <------ -CCA1(2) --------->YAB1 <-----------RAV1(1) --------->ANAC58 ---------->DOF2--------->ICU4   <------   gatggtggttcatcatcaagtgatcaaatggtgcccaagaaggagacacgactaaaattgacgataaagaagaaagataatcatcaagaccaaaccgatc  13253700  Previous    Next  AGI:  At4g26150.1    Description:  CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1); transcription factor. Identical to Putative GATA transcription factor 20 [Arabidopsis Thaliana] (GB:Q9SZI6); similar to GNC (GATA, NITRATE-INDUCIBLE, CARBON METABOLISM-INVOLVED), transcription factor [Arabidopsis thaliana] (TAIR:AT5G56860.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63090.1); contains InterPro domain Zinc finger, NHR/GATA-type; (InterPro:IPR013088); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) Range:  from: 13253219    to: 13254913    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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