Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    <---------ARR14(2)      --------->TOE2(3)      --------->YAB1    --------->ANAC58              ------->TEIL                                           --------->ARR14(2)    --------->ANAC58          <---------TOE1(2)         <---------TOE2(2)          ----------->HVH21- -----ARR11(3)    <---------ARR11(3)                    <---------TOE1(2)    --------->ARR11(3)  ---- ---->ARR11(3)    --------->ARR14(2)        <---------LBD16                <---------ZAT6<---------ARR14(2)   actcacaagcttaatagccagttcttcattcgtatgaatattagtacctggaaaatcacaggttaacaacaatgttagagataatgtgacgaattcgata  13230400                                               <------ZmHOX2a(2)                                               <<<<<<<<<GATA-1                                               <---------GLK1(1)                                               <<<<<<<<<GATA-4         <------ZmHOX2a(2)                                               <<<<<<<<<GATA-3        --------->ARR14(2)                                               <<<<<<<<<GATA-2        --------->ARR11(3)                                              <---------AGP1 --------->MYB46(3)  <------NtERF2        --------->AHL20(2)                    --------->ARR11(3)      <---------ARR11(3)        <---------AHL20(2)          ------->TEIL            ------->TEIL------>ZmHOX2a(2)    --------->AHL20(2)             --------->MYB52(1)    <---------MYB52(2)   ------>NtERF2    <---------AHL20(2)          <-----------------------TaNAC69(2)    <---------ARR14(2)           <-   --------->AHL20(2)          --------->CCA1(2)------>ZmHOX2a(2) --------->MYB52(1) --------->ANAC58 -------->TOE2(3)             <----------ID1  <---------ARR11(3)<---------MYB52(2)   --------->ANAC58 ----->GLK1(2)    ---------->DOF2  <---------ARR14(2)  --------->MYB52(1)<----------DOF2          ---   atccataaaattaaaaactagaaagtgagagagagacgaaccgagatagatctctccaaacgaaccactaccgatctttcggccgagacgaaacttgttc  13230500                                                  ------->GAMYB                                                --------->ANAC58                                                --------->ANAC58                                                -------->P                       --------->ANAC46        ------->GAMYB           <---------HSFB2a(2)                --------->MYB46(3)           --------->HSFB2a(2)              <-----------GT1         ---------->DOF2        --------->ARR14(2)               --------->YAB1       <-------TEIL        <---------ARR14(2)               --------->TOE1(3)  --------->ARR14(2) <---------ALFIN1      --------->ANAC58  --------->TOE2(3)  <---------ARR14(2)                  ----- --------ALFIN1        --------->ANAC58 <<<<<<<<<ARR1  --------->ANAC58        <---------PCF5 ------- ------>ANAC46      --------->MYB46(3)  <<<<<<<<<ARR2  --------->ANAC58   ---------->DOF2     <------   cccacacgaggttccataaataaccacgaaaccccttgtacaatcttaacaacccagacgcagattcaaatagagcgaaagggaccccaaaaacaatcct  13230600                        --------->LBD16                       --------->HSFB2a(2)                       <---------HSFB2a(2)                               ------>NtERF2                   --------->WOX13(1)        --------->ANAC58           --------->DEAR3(1)                --------->ANAC58          <------ZmHOX2a(2)    --------->ARR14(2)                --------->ANAC58         --------->ARR11(3)    <---------GLK1(2)                --------->ANAC46         <---------ARR11(3) --------->ANAC55(2)            <---------ALFIN1            --------->GLK1(1)   <---------ANAC55(2)          --------->RAP2.3(2)        --------->LBD16        <---------TOE2(3)          --------->DEAR3(1)       ------->GAMYB            <---------ANAC46                   ------          --------->RAP2.6(2)    --------->ANAC58          <---------LBD16                    ------- ->ZmHOX2a(1)----------->RAV1(1) -------->P  --------->ANAC58  <---------ARR14(2)             <------ -->YAB1<---------At4g35610      --------->ANAC58         --------->MYB52(1)     --------->YAB1<----- ---ICU4--------->At4g35610    --------->MYB46(3)    --------->YAB1    --------->ORA47(2)   ---------   gactagaatcagccgcaccagcaatccagaaaaacaacccagagatcacgaacaatgagattacggatttttcgccgactaaatcaaaacccagtaatca  13230700                                                             <---------ANAC58                                                             <---------ANAC58                                                            <---------HSFB2a(1)                                                            --------->HSFB2a(1)                  ----------->GT1                           --------->HSFC1(2)    <---------ANAC58                                  --------->HSFB2a(2)    <---------ANAC58                                  <---------HSFB2a(2) --->YAB1       ------>ZmHOX2a(2)                    <---------LBD16 -->ICU4      <---------ARR14(2)               <---------ANAC58 ---ATHB12    <---------AGP1                   <---------ANAC58 ----ICU4     --------->ARR14(2)               <---------ANAC46 >YAB1 <---------ZAT18                    <---------GLK1(2) <---------HSFC1(2)  ------>ZmHOX2a(1)   tcttcttcgtgctctcgatctggtgaaaaaactccatatgaacagaatgtcgttttctgggatgcttctctctctctctctcctctcaagaattgaatac  13230800                                                                                     ---------->ID1 -                                                                                     <-----------GT1<                         --------->ARR11(3)                                <----------DOF2    <------                         <---------ARR11(3)                            <---------ANAC46       <------       xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      ---------->DOF2      <-----------GT1 <      *TSS           ---------->DOF2                     <----------DOF2<------------------------ANAC81      xxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <------ZmHOX2a(1)   <---------ANAC58   <----------DOF2 ------------------------>ANAC81                 <---------TOE2(3)     <---------ANAC58 ------>ZmHOX2a(1)   gaagataaaaaaaaaaaaaaaaaaaaagagcttcgatggacagaaaacgatgaggatgtctttctcaaagtttgcgtctttttttttttcctctttcctt  13230900                  --------->AHL20(2)                  --------->AHL20(1)     --------->LBD16    <---------ANAC46    <---------ANAC55(1)    <---------ANAC58    <---------ANAC58  <---------AHL20(2)                                                          <--   <---------LBD16<---------AHL20(2)                                     <------MYB83            ----   <-----------------------TaNAC69(2)--------->ATHB12    <---------ZAT18 <------MYB46(1)         ---- -------->At4g35610   --------->AHL20(2)        <-----------RAV1(1) <------MYB46(1)            ------ -------GAMYB    <---------AHL20(2)  <---------ICU4      --------->ZAT14--------->MYB59        <----- ---ANAC58       --------->AHL20(2)<---------WOX13(1) <---------ANAC46<---------MYB52(1)       ------ ---ANAC58 ----------->GT1<-----------GT1  --------->LBD16          <------MYB83       <---------DEAR3(2) ---------At4g35610  <---------AHL20(2)  <---------LBD16<---------ANAC46<---------AtMYB61     -------   gcagttgcgggtaatgtaaaaaaattatttacctctgaatgattccggttttgttgctgtgtgctatgttcggtttggtttctatgcttcggttcaacca  13231000           <---------ICU4        --------->YAB1        <---------ICU4        -------->HAHB4       <---------ATHB12       --------->ICU4       <---------YAB1      <---------TOE2(3) -------ATHB12      --------->YAB1 -->MYB46(1)       --------->At4g35610 -->MYB83 <---------YAB1 --->AtMYB61      --------->ANAC58                                                         --------->AHL20(2) ----MYB59--------->ICU4  ----------->GT1                                  <-------TEIL  <----------DOF2 ->GAMYB--------->ATHB12  --------->YAB1    ----------->GT1               <-----------GT1--------->TOE2(3) -->MYB46(3)      --------->ANAC58----------->GT1                      ------->TEIL   --------->GLK1(2)   aacaatctaatgattatggcaagcagaatagtaaaatagaaaaaatgtgtaaaacatctatagaacacatatgtatatacatgctgagcatctttaaatc  13231100                                                                                               <xxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                            xxxxxxxxx                                                                                            xxxxxxxxx                                                                                            <xxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                         --------->ZAT18                                                                                         <---------ZAT18                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                <---------MYB52(2)                                   xxxxxxxxxxxxxxxx                               ------>MYB46(1)                                       <xxxxxxxxxxxxxxx                               ------>MYB83                                          xxxxxxxxxxxxxxxx                             <---------MYB111(1)                                    --------->MYB46(3)                           -------->P                                               xxxxxxxxxxxxxxxxx                       <---------ARR11(1)                                           ---------->DOF2                       --------->ARR14(2)                                        --------->MYB46(3)<x                       --------->GLK1(2)                                        xxxxxxxxxxxxxxxxxxxxx                       <---------ARR14(2)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       ------->TEIL                                        xxxxxxxxxxxxxxxx>smallRNA(i)                       <-----------ARR10                     ----------->GT1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                      <---------ARR14(1)                     --------->LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                  --------->At4g35610                      <---------LBD16xxxxxxxxxxxxxxxx>smallRNA(i)   --------->YAB1 <---------At4g35610                    <-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   cacaaaaatactactatttgagccgaatctaccaactaaactaaacctggttttaaaattatccggtttatttgagagtttcaacaacaagcgcgcttag  13231200         --------->YAB1     <---------ICU4    --------->ICU4    <---------YAB1  <---------ICU4  --------->YAB1  <--------HAHB4 <---------YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->ICU4 xxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxsmallRNA(fl3)                           <---------TOE2(3) xxxxxxxxxxxxxsmallRNA(i2)                           <---------AHL20(2) xxxxxxxxxxxxxsmallRNA(si3)                         --------->AHL20(1) xxxxxxxxxxxsmallRNA(s2)                        <---------AHL20(2)    --------->AHL20(1) xxxxxxxxxxsmallRNA(i2)                    <---------ARR11(3)         --------->AHL20(2) xxxxsmallRNA(i)                          <------MYB46(1)          --------->WOX13(1) xxxx>smallRNA(si3)      --------->MYB52(2)--------->ARR11(3)<---------YAB1 xxxxxxxsmallRNA(le3)  <--------P <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxx>smallRNA(le3)  ----------->GT1      <------MYB83 <---------TOE1(3)  ----------->GT1 xxxxx>smallRNA(si3)<---------TOE2(3)    --------->MYB59     --------->ICU4      <---------ICU4 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)---------->DOF2 <---------AHL20(2)<---------AHL20(2) x>smallRNA(i2)     <---------TOE1(3)--------->DAG2 --------->AHL20(2)<---------AHL20(1)          <--   accatcattattcatagtttataaggttagttcttagataaagtaggtcttaaatttaatgttataattcaattaattgttaaaaatgactcttatataa  13231300  Previous    Next  AGI:  At4g26100.1    Description:  CK1 (casein kinase 1-like protein 1); casein kinase I/ kinase. Identical to Casein kinase I isoform delta-like [Arabidopsis Thaliana] (GB:P42158;GB:Q9SZI1); similar to CKL12 (Casein Kinase I-like 12), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT5G57015.1); similar to CKL2, casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT1G72710.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45666.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65329.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80417.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains Inte Range:  from: 13227459    to: 13230806    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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