Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               --------->HSFB2a(2)             <---------HSFB2a(2)         ------>ZmHOX2a(2)         =============================HOX2a_HOX2a        --------->GLK1(1)        <---------GLK1(1)        <---------At4g35610        --------->At4g35610        <------ZmHOX2a(2)        ==============================HOX2a_HOX2a       <---------ARR11(3)                              --------->DAG2       --------->ARR14(2)                   <-----------GT1            <---------ICU4              <-       <---------ARR14(2)      ------>ZmHOX2a(1)      ---------->DOF2  --------->YAB1    <---------ZAT6       --------->ARR11(3)  --------->ARR14(2)<---------YAB1      --------->TOE2(3)     --------->LBD16   agaactagggatctgccagaactaaacagcatcctcccatctcgattttcattccaaaaagttgaaacattagtcatcacaaattgccccagagttaaga  13227200                                                                                         ------>MYB46(1)                                                                                         ------>MYB83                                                                                         --------->MYB52(1)                         --------->At4g35610                                           --------->AtMYB61                <------ZmHOX2a(1)                                                      ------->GAMYB              --------->ALFIN1                                                        --------->MYB46(3)           <------ZmHOX2a(1)                                                      <------ZmHOX2a(2)        <-----------RAV1(2)   ------->TEIL                         --------->ANAC58  -------->P <----        <---------LBD16<-----------RAV1(2)                       ---------->DOF2 <---------ARR11(3)   <---------ANAC58    ==========================RAV <------ZmHOX2a(1)           --------->ARR11(3)<-   <---------ANAC58 <---------ARR14(2)               ====================================HOX2a_HOX2a  ----------------->AGL1 <---------At4g35610        ----------->GT1--------->ANAC58 --------->WOX13(1) -----------AtMYB77<------ZmHOX2a(1) ----------->RAV1(1)    ----------->GT1  ---------->DOF2    -----   aactgccgtttcaggagaggaggacccagatgaacttgccaacagtttattgtgaggagaaatggtggaaagcactggaaaaagatcaaccaaacgaaga  13227300                                                                                               <-----                                                                                            <--------                                                                                            ---------                                                                                            <------MYB46(1)                                                                                            <------MYB83            --------->ZAT18                                                                 <--------            <---------ZAT18                         --------->ZAT14                         ---------         <---------At5g28300                        <---------ZAT14                      <------ZmHOX2a(1)        <-----------GT1                      <---------ZAT18                          <-----------RAV1(2) -----ARR11(3)                               --------->ZAT18                       --------->ANAC58 ---------DOF2                               --------->ZAT14                     <------ZmHOX2a(1) ---->ARR11(3)  <----------DOF2              <---------ZAT14         --------->YAB1--------->ANAC58   gctttgttatttaccgcgctttgttccaaattgatataagagctaagagcactctgtacaaatatgtccattcataagtagcaggaagccaggaaggttg  13227400                                                                                   <------ZmHOX2a(2)      --------->bZIP60(1)                                                         --------->ARR11(3)      <---------bZIP60(1)                                     ------>MYB46(1)     <---------AGP1    <---------ZAT18                                           ------>MYB83===========================    <---------ZAT14                                --------->YAB1         <------ZmHOX2a(2)       <--    --------->ZAT14                               <---------ATHB12    --------->LBD16            <--- ----MYB46(3)                                     <---------YAB1     --------->ANAC46          ------ -HSFB2a(1)                                  <---------ANAC55(2)    <---------LBD16================== >HSFC1(2)                                   --------->ANAC55(2)  --------->ARR14(2)================= -HSFC1(2)                    --------->ANAC46    --------->ICU4  <---------ARR14(2)------>ZmHOX2a(2) >HSFB2a(1)         --------->ZAT6        --------->GLK1(2) <---------MYB59       <---------ARR11(3)   ttccagtgaagtcatcaactttccactagaccacaaaactagagattatgtaatcataaaaaccaaactatccgcgatcaaatagatctcacgactatga  13227500                                                                                          --------->GLK1(2)                                                                                     ----------->RAV1(1)                                                                               ------>ZmHOX2a(2)                                                                              <---------GLK1(1)                                                                              --------->GLK1(1)                                                                              <------ZmHOX2a(2)                                                                             <---------AGP1  <-------                                                                             --------->AGP1 <--------                                             --------->ARR14(2)              <---------ARR14(2) ====HOX2a_HOX2a                             <---------ARR14(2)              <-----------ARR10------- ----ZmHOX2a(1)                       <---------ZAT2                         --------->ARR14(2) -------ID1                  <---------GLK1(2)     <------ZmHOX2a(2)         <---------ARR11(3)     - --->YAB1         <---------ANAC46    --------->ZAT2    <---------ZAT14      --------->ARR11(3)   <-- ====HOX2a_HOX2a<---------ARR14(2)   --------->ANAC58   --------->ZAT14     --------->At4g35610   --- ====HOX2a_HOX2a--------->ARR14(2)   --------->ANAC58   --------->REM1(2)   <---------CCA1(2)--------   ggacgaagactcaccgagtatcgtcgatatagaaactccaagctccagttccgatcagtgaagacgaacaagtttatcagatctctgcaacaattctggg  13227600                                                                                       ----------->GT1     --------->At4g35610                                                             ------>ZmHOX2a(2)     --------->TGA1a                                                                 <---------LBD16     <---------At4g35610                                                           --------->ARR14(2)     =========================================bZIP_DOF                             <---------ARR14(2) <-----------TGA1                                                                --------->LBD16 <-----------HVH21                                                             <---------LBD16 --HSFB2a(2)                                                                  ------->TEIL -LBD16                                                                    ----------->HVH21 -->LBD16                                                                --------->At4g35610        < -------->YAB1                                              <------------CBF <---------ARR14(2)     - -------ARR14(2)                                 ------>NtERF2           <---------At4g35610 <------- ------>ARR14(2)               *TSS           <---------ATERF1(1)<---------At4g35610<------ZmHOX2a(2) ->HSFB2a(2)      --------->AtMYB61---------->DOF2     --------->REM1(2) --------->ZAT2--------->LBD16   aatcgtcacctcagattagacctccagtaagaagtgagaaagcatggacgacgactgtgaagaattgagctaatgagctgaaccggatccggtgaaattg  13227700                                                       <---------ANAC58                                                       <---------ANAC55(2)                                                       --------->ANAC55(2)                                                       <---------ANAC55(1)        ------>ZmHOX2a(2)                              <---------ANAC46       --------->ARR11(3)       <------ZmHOX2a(2)                               <---------ANAC58       <---------ARR11(3)      --------->ARR14(2)                               <---------YAB1    --------->YAB1          <<<<      <---------ARR14(2)                      <---------AHL20(2)        <---------YAB1           <<<<  <---------LBD16                             <---------YAB1          --------->YAB1            ----- ---------ARR14(2)                        <---------YAB1              <---------ICU4            ----- -------->ARR14(2)                    <----------DOF2<-----------GT1 <---------ATHB12         <------ -----CBF       >>>>>>>>>TBF1      ------->TEIL   <---------ICU4     --------->ICU4     --------->ZAT14   cagaaccggatcggagaagaagaattttgcatttgtgcatctttatttttaattgttacgtttgagccccaataatcatagatattgtagtgaagaccaa  13227800                                                  ------->GAMYB                                               --------->MYB52(1)       <---------MYB46(3)                     --------->ICU4        <-----------HVH21 <<<<<SARD1    --------->AHL20(2)        ----------->GT1          --------->DAG2         ------->TEIL <<<<<CBP60g   --------->YAB1            <---------ZAT6         ---------->DOF2    <---------AHL20(2) ->MYB46(1)   <---------ATHB12      <---------ANAC58     ----------->GT1          --------->AHL20(2)< ->MYB83    --------->WOX13(1)      <---------ANAC46   --------->DAG2      ----------->GT1    ------- ---MYB59 <------ZmHOX2a(2)         <---------ANAC58  ---------->DOF2--------->ZAT18 <---------TOE2(3)   atttcatggtggatcaatcaaattgtattttcaaattttcgtagtgtaataacggaaaaaggaataaaaaggtcactgagtaaaattaatgtatcagtgg  13227900                                                                                   --------->LBD16                                                                                  <-----------RAV1(2)                                                                                  <---------LBD16                                                                                 --------->LBD16                                                                             --------->DEAR3(1)                                                                           --------->ZAT2           <                                                                           <---------ATERF1(1)     <-        <---------SPL7                                                    --------->ANAC46     <----- <------MYB46(1)                                                    --------->GLK1(1)         <------ <------MYB83                      <----------DOF2                  <---------GLK1(1)     ----------- ---------AtMYB61               ------>NtERF2                      <---------ARR14(2)<------ZmHOX2a(1) -->ALFIN1             <---------GLK1(2)      <---------GLK1(2)    --------->ARR14(2)================   ggatggtgttcgtccgagacttgaagattatcgatgcctttaactactgattcgtagtgtcttcttgtggatttcccagcctccccaggagagtttctcg  13228000                 ----------->HVH21                <-----------HVH21               ==========================bZIP_DOF               <---------O2               --------->O2               <---------bZIP60(2)               --------->bZIP60(1)               --------->bZIP60(2)               <---------bZIP60(1)               --------->TGA1a               --------->TGA2(1)               <---------TGA1a               <---------TGA2(1)               --------->ANAC58               --------->ANAC58               --------->ANAC55(2)               --------->ANAC46              <-----------STF1              ----------->STF1             <---------TGA2(2)            ----------->TGA1            ----------->HVH21          <---------ZAT2          ----------->RAV1(2)          --------->ZAT2          <------NtERF2          <---------At4g35610        <---------DEAR3(1)        <------NtERF2       <------NtERF2       <---------LBD16       ------>NtERF2<------------------SPL14       <---------At4g35610    <----------DOF2       --------->LBD16    <---------RAP2.6(2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <---------ATERF1(1)--------->SPL1(2)                               ------>NtERF2      --------->DEAR3(1) --------->RAP2.6(3)                          <---------At4g35610       =====   --------->ANAC46 ----------->RAV1(2)                               --------->At4g35610       -----   --------->ANAC58 ==============================RAV   ----------->GT1 <---------ATERF1(1)     <----   --------->ANAC58 --------->At4g35610                --------->LBD16----------->RAV1(2)       ----- ------ZmHOX2a(2)--------->TGA2(2)                   <---------ANAC46 --------->ZAT2   <---------MYB52(1) ----------HVH21<-----------TGA1      ----------->RAV1(1)             <---------ZAT2   <---------ARR14(2) ----LBD16--------->At4g35610<---------GLK1(2)      ------>NtERF2    ------>NtERF2 <---------ZAT14 ---LBD16------>NtERF2   --------->SPL7 --------->REM1(1)            --------->LBD16   --------->ARR14(2) ------------>TaNAC69(2)--------->SPL1(1)      ------>ZmHOX2a(1)   <---------LBD16 --------->ZAT14 ======HOX2a_HOX2a  <---------At4g35610 --------->MYB46(3)      <-----------HVH21  <---------ZAT18   ggatcacgccgcggctgacgtcacctgtacggcttctctgcaacaactcctcgctgcctggaaaattgtcccggctgccacttactgcagttactctcct  13228100  Previous    Next  AGI:  At4g26090.1    Description:  RPS2 (RESISTANT TO P. SYRINGAE 2). Identical to Disease resistance protein RPS2 (RPS2) [Arabidopsis Thaliana] (GB:Q8LKZ8;GB:Q8LKZ9;GB:Q8LL00;GB:Q8LL01;GB:Q9ASP5); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G12280.1); similar to RFL1 (RPS5-LIKE 1), ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G12210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65320.1); similar to RPS2 [Arabidopsis lyrata] (GB:AAM90858.1); similar to RPS2 protein [Brassica oleracea] (GB:AAF19803.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains Inte Range:  from: 13224347    to: 13227881    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g26095.1    Description:  other RNA Range:  from: 13224347    to: 13227631    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g26100.1    Description:  CK1 (casein kinase 1-like protein 1); casein kinase I/ kinase. Identical to Casein kinase I isoform delta-like [Arabidopsis Thaliana] (GB:P42158;GB:Q9SZI1); similar to CKL12 (Casein Kinase I-like 12), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT5G57015.1); similar to CKL2, casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT1G72710.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45666.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65329.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80417.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains Inte Range:  from: 13227459    to: 13230806    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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