Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              --------->ANAC58                            --------->AtLEC2 --------->YAB1             --------->ANAC58 ----TEIL --------->YAB1 <---------ATHB12                              <---------WOX13(1)         --- ->ARR11(3)     <---------ICU4                      --------->DAG2   --------->ATHB12         ------- --ARR14(2)    <---------ATHB12                    ---------->DOF2  <---------YAB1      ----------->GT1 ->ARR14(2)--------->AHL20(2)                <---------ANAC46 ----------->RAV1(1)      --------->DAG2 --ARR11(3)<---------AHL20(2)            <---------WOX13(1)<-----------GT1            ---------->DOF2   tcatcgtaactattttaatcaatacaaatcatgcaaaatagtgaatgacttagaaaagttgaaaccacatatgattgagtttagggggaaaagtataaaa  13196900                                                        <---------------AGL15                                                        --------------->AGL15                     ---                                                       ----------------->AGL3                 -------                                                       <-----------------AGL3                 -------                                                       <-----------------AGL2            <---------AHL20(2)                                               <---------TOE2(3)        <---------YAB1   --------->AHL20(2)                             <---------At4g35610       ----------------->AGL2 <-----------GT1-------- ------->DOF2   <-----------GT1          <---------AHL20(2)       --------->CCA1(2)   --------->TOE1(3) --->DOF2      <<<<<<<<<MYB98--------->At4g35610 --------->AHL20(2)<-------TEIL       --------->TOE2(3)   gaaagcatgactagtatgttactatgtagtaagcttcaaacatatatttaagaaaatactatatatagatacatatgatataacataacattaaaatata  13197000                       ------>ZmHOX2a(1)                      --------->TOE2(3) -------->GT1      <---------ARR11(3)                                                     ------>MYB83 -->AHL20(1)       --------->ARR11(3)   --------->ANAC46                  ----------->GT1 ------>MYB46(1) -->ARR11(3) --------->TOE2(3)       --------->ARR14(2)                   <---------MYB46(3) ->AHL20(2)<-----------GT1           <---------ARR14(2)                <----------DOF2  <---------MYB59   tggtgaaacattttttcttaatatcctaagcttcaaacatatacccaagtagagaagagttggagtattcattctttggttaaacatagacctaatacat  13197100                                                                                                   --                                                                                                   --                                                                                                  <--                                                                                                <----                                                                                               ------                                                                                             <-------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                --------->YAB1                                   <----------ID1------                                --------->ATHB12                  --------->DAG2 --------->ANAC58 <--                               <---------YAB1       ----------->GT1            ---------->DOF2<------                             --------->YAB1 ----------->GT1      ---------->DOF2 --------->ANAC58 ---   agctcatatggacaatttttcgacaaaacaaaaatgatagcaaatgggctaaaatggtttcatatcgaaaagcccaaaccattaagccaaaacgacgtcg  13197200                                                                                                    -                                                                                                    <                                                                                                   <-                                                                                                   <-                                                                                               ------                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                              ------>NtERF2                                                                                             --------                                                                                             <-------                                                                                             --------         <---------At4g35610                                                                 --------  --------->CCA1(2)                                                                         <------NtERF2 ------->ANAC58                                                                             --------- ------->ANAC58                                                                             --------- -------TOE1(2)                                                                             --------- -----SPL7                                                                                  --------- --->TOE2(1)                  ----------->RAV1(1)                                           --------- ----HVH21<---------DEAR3(1) --------->AtMYB61                                             --------->At4g35610 -bZIP60(1)                  <---------ALFIN1                                              <---------ATERF1(1) >O2     --------->At4g35610--------->MYB46(3)                                             <---------At4g35610 -O2----------->HVH21     --------->AtMYB61                                                <------NtERF2 >bZIP60(1)               ------->GAMYB                                                    ------>NtERF2 --->TOE1(1)              --------->ANAC46---------->DOF2                 <-----------GT1 <---------DEAR3(1) -------TOE2(2)     ------>ZmHOX2a(1)----------->GT1      <---------At4g35610             --------->DEAR3(1) ---------AtSPL3<---------ARR14(2)  ----------->GT1    *TSS     <----------DOF2           --------->RAP2.6(2) ------>SPL7<------NtERF2--------->MYB46(3)           <----------DOF2  <---------ZAT6    <---------RAP2.6(2)   tacgatatgacagcggcgattcctataaccaccaccagaggttaaaaagtctctctctttagctatcttttttgtgttaccggttcaaatggccgccgtc  13197300                                                                           ------>NtERF2                                                                           <------NtERF2                                                                          --------->RAP2.6(2)                                                                          --------->RAP2.3(3)                                                                          --------->DEAR3(1)                                                                         --------->RAP2.3(1)                                                                         <------NtERF2                                                                         --------->DEAR4(2)                                                                         --------->ATERF1(1)                                                                        ------>NtERF2                                                                       --------->RAP2.3(3)  --------->GLK1(2)                                                    --------->RAP2.3(2) --------->ARR14(2)                                                    <---------ATERF1(2) <---------ARR14(2)                                                    --------->ATERF1(2) <---------GLK1(2)                                                     --------->DEAR3(1) -------->HSFB2a(1)                                                   --------->ATERF1(1) ----------TaMYB80                                                    --------->ORA47(2) --------TOE2(2)                                                      --------->RAP2.3(1) --------TOE1(2)                                                      --------->ERF1 --->ATERF1(1)                                                        <---------RAP2.6(2) -NtERF2                                                             <---------ZAT18 ---ATERF1(1)                                                 --------->ARR14(2) <---------ANAC58 -----HVH21                                                   <---------ARR14(2) <---------ANAC58 ->O2  <---------MYB52(1)                                   <------NtERF2--------->RRTF1(1) --O2<---------ANAC46           ------>MYB83               --------->LBD16--------->RRTF1(2) ->RAP2.3(2)                    ------>MYB46(1)            ------>NtERF2<---------ATERF1(1) ->DEAR3(1)               ---------->DOF2                 <---------ANAC46--------->RAP2.3(2) >RRTF1(1)             <---------HSFB2a(2)             <---------ATERF1(2)--------->RRTF1(3) >DEAR4(2)             --------->HSFB2a(2)      --------->TOE2(3) <---------ANAC58  <---------WRKY18(1) >ATERF1(1)         --------->ARR14(2)          --------->TOE1(3) <---------ANAC58<---------WOX13(1) >RAP2.3(1)    --------->MYB52(1)  --------->LBD16    <---------LBD16<---------ATERF1(1) >ERF1<-------GAMYB <---------ARR14(2)    --------->YAB1 <---------LBD16<---------RAP2.3(1)    <-----   gcagattccgttgagaacaacggttccataaacctccctgagaatgaaaaccttataccggcgggattcagtgccgccgcattgcttgacgaaaactctg  13197400                                      ----------->RAV1(2)                          --------->ALFIN1                                      <---------ZAT2                             <---------O2                                      <---------At4g35610                 <------NtERF2                                      --------->ZAT2                     --------->LBD16                                      --------->At4g35610              <---------LBD16         <-----                                   <---------At4g35610                 <---------At4g35610     <-----                                   --------->At4g35610       --------->TOE1(2)  <---------AtMYB61                                  ================RAV    <---------ARR14(2)     --------->ALFIN1                                  <-----------RAV1(1)    --------->ARR14(2)  <------ZmHOX2a(1) <-----                                <---------ZAT2         --------->LBD16 --------->LBD16       <------MYB83       --------->LBD16          --------->At4g35610    --------->ANAC46--------->At4g35610   <------MYB46(1)      --------->LBD16           <---------At4g35610   --------->LBD16 <---------ANAC46     <--------P     <---------LBD16        <---------ANAC58       ------>MYB46(1)   <---------LBD16     <---------ZAT2 <----------DOF2            <---------ANAC58       ------>MYB83    <---------ARR14(2)  <-----------RAV1(2) ------RAV1(1)          <---------MYB52(1)       --------->AtMYB61 --------->ARR14(2)<------NtERF2  <   gcgctttccctgaattgaatcagcccgatagcttagctgctgctgagactaccttccccgatacgaacgattccgcggaggagaggtggccaggttggcc  13197500                <---------TOE2(2)      --------->ANAC55(2)      <---------ANAC55(1)   <---------MYB52(1)              --------->DAG2      <---------ANAC55(2)  --------->LBD16                ---------->DOF2      <---------ANAC58     <---------At4g35610         --------->ANAC58      <---------ANAC58    <---------ANAC46      -------->ATHB1      <---------ANAC46   <---------LBD16        --------->ATHB12   <---------WOX13(1) --------->KAN4(2)        --------->ICU4 <---------MYB46(3)  ------>ZmHOX2a(2)         <---------YAB1      --------------->AGL15 --------->ATHB12<---------YAB1             =======================================MADS_MADS ----ANAC58  <---------ANAC46               <-----------------AGL3 <---------------AGL15 ----ANAC46  <---------ANAC58            <------NtERF2 --------->ANAC46   <XXXXXXXXXXXXXXXXXXXXMIR835-5P ----ANAC58  <---------ANAC58--------->WRKY38(1)--------->ATHB51   <----------DOF2--------->ALFIN1 ---------YAB1  <---------TOE1(2) ---------->DOF2      --------->ANAC58 ---------->DOF2 <------ZmHOX2a(1)   tggtgattgcgtgtttcgtatgatcgttccggtgactaaagtcggagctattattggacgcaaaggtgactttataaagaagatgtgtgaggagactcgt  13197600                                                   --------->ARR11(3)                                                   <---------ARR11(3)                                              <---------MYB52(1)                                       ===============================HOX2a_HOX2a                                       ------>ZmHOX2a(2)                    <---------At5g28300                       ======================HOX2a_HOX2a                   <-----------GT1                       =======================HOX2a_HOX2a                <----------DOF2             =================================HOX2a_HOX2a           --------->ANAC55(2)             ================================HOX2a_HOX2a            --------->ANAC46             ------>ZmHOX2a(1)        ================================HOX2a_HOX2a                 ---      ---------->DOF2  ----------->GT1<------ZmHOX2a(2)             <---------ANAC55(2)           <--  <---------CCA1(2)    ------>ZmHOX2a(1)     --------->TOE2(3) ------>ZmHOX2a(1)     ---------->DOF2   gctcgtatcaaagtccttgatggtcctgttaatactcccgatcgcatcgttagtatctctatctccttctacgtgatttactgtgttcaaagctaattcg  13197700                                                                   <--------HAHB4                                                   <---------GLK1(2)                                                   <---------ARR14(2)                                                   --------->ARR14(2)                                                   <---------ARR11(3)                                                   --------->ARR11(3)                                                  --------->HSFC1(2)                                                  <---------HSFB2a(1)   <---------TOE2(3)               <-----------GT1                    <---------HSFC1(2)--------->TOE2(3)           <---------AHL20(2)                     --------->HSFB2a(1)  ---------->DOF2           --------->AHL20(2)         <---------ICU4               <---------ICU4      <---------ARR14(2)              --------->YAB1--------->GLK1(2)<---------YAB1  <---------LBD16                    <---------ATHB12          <---------YAB1  <---------ZAT18 ------>ARR14(2)                --------->TOE2(3)----------->ARR10--------->ICU4       <-----------GT1 -------ARR14(2)  <---------------AGL15        <------ZmHOX2a(1)  <---------YAB1   <----------DOF2  <   aatttggggatttttaatttctatttctagggtttcttaatcataagtaggaagattcttgagttgtgatcattaaagttgtgaacttttatcccctagt  13197800  Previous    Next  AGI:  At4g26000.1    Description:  PEP (PEPPER); nucleic acid binding. similar to FLK (FLOWERING LOCUS KH DOMAIN), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G04610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69585.1); contains InterPro domain K Homology; (InterPro:IPR004087); contains InterPro domain K Homology, type 1; (InterPro:IPR004088) Range:  from: 13197255    to: 13199845    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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