Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                              <------                                                                                             <-------                                                       ------>ZmHOX2a(1)                     --------                                                   --------->ARR14(2)                        --------                                                   <---------ARR14(2)                     <---------ATHB12        --------->HSFB2a(1)                        ------->TEIL                         --------->WOX13(1)       --------->ARR11(3)                       <---------ANAC58                      ---------------       --------->ARR14(2)                       <---------ANAC58                      <--------------       <---------ARR11(3)                       <---------ANAC46                     --------->ANAC58       <---------ARR14(2) --------->STY1(2)  <---------MYB52(1)                      --------->ANAC58      <---------CCA1(2)   <---------STY1(2) <-------GAMYB   <-------TEIL <---------MYB52(1)  -------- ---TOE1(3)           --------->YAB1       <---------MYB46(3)    ---------->DOF2----------->ARR10 ---TOE2(3)          <---------YAB1---------->DOF2<---------CCA1(2)     <-------GAMYB----------------   tttttctcaaatcttccaatgctataatagctagctctaaagtgtccgttgtgtatcctacatacatataagcccgttggattagatacccaatcaagta  12944600                               <---------STY1(2)                               --------->STY1(2)                             ===================HOX2a_HOX2a ---->MYB52(1)               ------>ZmHOX2a(1) ---MYB52(2)             <---------ARR14(2) --ANAC55(2)             --------->GLK1(2)                                       <---------At4g35610 ->ANAC55(2)           --------->HSFC1(2)===============================HOX2a_HOX2a ->ANAC58              --------->HSFB2a(1)                                       --------->At4g35610 >AGL15                <---------HSFC1(2)------>ZmHOX2a(2)           --------->ANAC58 -AGL15                <---------HSFB2a(1)  --------->AtLEC2         --------->ANAC58 ->ANAC58       ------>ZmHOX2a(1)      <---------ARR11(3)            --------->ANAC46 ->AGL1         ================================HOX2a_HOX2a      ------>ZmHOX2a(1)       <-------TEIL   acgcttggaaatggagtcctatggaagaatcctagctacttgatctatgcaaaaccattccactctcctacaagctaaaacgaagcagaggttcatcaac  12944700               --------->At4g35610               <---------At4g35610      ------>ZmHOX2a(2)     <------ZmHOX2a(2)     --------->CCA1(2)    --------->ARR14(2)    --------->AGP1<-----------RAV1(2)               ----------->RAV1(1)    <---------ARR11(3)                         --------->WOX13(1)    <---------ARR14(2)                        <---------ICU4    --------->ARR11(3)                       <---------ATHB12   <---------GLK1(1)                     <---------MYB52(1)          <---------AHL20(2)   --------->GLK1(1)                    --------->LBD16           ------->TEIL                      <  ----------->ARR10 ----------->GT1     <---------At4g35610    ----------->GT1                 <-----   tagagagatccgaattgagctcaggtaaattcgaatttgttccgctaatcaatccaacatttggaatgtatataaacttactcgatagaatgcgacgatc  12944800                                                                                                  <--                                                                                                  ---                                                                                               ------                                                                                             --------                                                                                             <-------                                                                                          ------->GAMYB                                 --------->ANAC58                   <------MYB83          --------->DEAR3(1)                  <<<<<<<<<AtERF-3                              <---------ANAC55(2)      <---------MYB55(2)                  <<<<<<<<<AtERF-4                              --------->ANAC58         --------->MYB46(3)                  <---------RAP2.3(1)                   --------->YAB1         <-----------GT1-------                 <---------RAP2.3(2)                   <---------YAB1    ----------->GT1 --------->DEAR3(2)                 <---------RAP2.3(3)                  --------->ARR11(3) --------->ICU4  <-----------                 <---------RAP2.6(2)           <-----------RAV1(2)  <------MYB46(1) --------->ANAC58-                --------->RAP2.6(3)       <------ZmHOX2a(1)     --------->ANAC58    --------->ANAC46<  <---------ANAC46------>NtERF2  --------->ANAC46     <---------ARR11(3) <---------YAB1--------->MYB52(1) ------ZmHOX2a(1)<---------DEAR3(1)  <------NtERF2<------ZmHOX2a(1)<---------TOE2(2)--------->ANAC58- -ZmHOX2a(2)  ----------->HVH21  --------->ANAC58--------->ICU4 --------->ANAC46  --------->AtMYB61 <   gaggacgtagagaggtatgacggctctgtgcttagacgcagcgaggaggccaggatgatcatcaacacgtaggtcatgtttaaaccacacaaccgccgtg  12944900                                                                                 --------->LBD16                                                            ----------->HVH21   <---------ANAC58        <---------MYB46(3)                                  --------->ARR14(2)  <---------ANAC58        --------->MYB52(2)                                  <---------ARR14(2)  <---------LBD16 --------->TOE2(3)                                         <------NtERF2       <---------LBD16 --------->TOE1(3)                                        --------->LBD16   ---------->DOF2 -------ARR14(2)                                        <---------LBD16     --------->GLK1(1) ------>ARR14(2)                                       --------->LBD16      <---------GLK1(1) --->ALFIN1                                            ------>NtERF2       --------->ARR14(2) ->DEAR3(1)                                       --------->KAN4(2)       <------ZmHOX2a(1) --ANAC46                                        <---------KAN4(1)       --------->ANAC58 -->LBD16                                        --------->HSFB2a(1)     --------->ANAC58 -AtMYB77    <---------HSFB2a(2)                 <---------ICU4       <-------TEIL                  - -------->HSFB2a(1)                             =================================HOX2a_HOX2a   ------ ---------HSFC1(2)       ----------->RAV1(1)    <------ZmHOX2a(2)  --------->At4g35610         ------ -------->HSFC1(2)    --------->ANAC58          <---------ATHB12   --------->GLK1(1)        <------ZmHOX2a(1) ---------HSFB2a(1)   --------->ANAC58    <-----------GT1--------->DEAR3(1)<---------ARR14(2)  ------   gaaccttcattcgttgccgaagacaaacaacatttgcatcggtttttccgatcattccgccggagacggagatgcaggaaatgcgggagagcgaggaacg  12945000         --------->ALFIN1      <---------DEAR3(1)         <--------P     <---------ORA47(1)         <-------GAMYB                                          <---------ANAC46    <------ZmHOX2a(1)          <------MYB83                                            --------->ALFIN1 -------->ICU4                 <------MYB46(1)                                       <---------ANAC46 --->ANAC58                   <---------MYB46(3)                                <------------CBF --->ANAC46               --------->ATHB12                    <---------At4g35610   <-----------RAV1(1) --->ANAC58             --------->GLK1(2)                     --------->At4g35610   <---------AtMYB61   ccatgaggacggtggaagaaaaccagaatcagtgggttagtactagtagtatccatgaagtcgaagcagagagagagagagggattgtggtggagaagac  12945100                                           ------>MYB83                                           ------>MYB46(1)                                          --------->MYB55(1)                                         <---------MYB111(1)                                         <---------MYB59                  <-----------GT1                                         <---------MYB52(2)       <---------ZAT14                                         <---------MYB111(2) <---------SPL7                                         <---------MYB46(2) --------->TOE1(1)                                        <---------ANAC55(2) --------->TOE2(1)                                        --------->ANAC46 --------->O2 <---------DAG2                                        --------->ANAC58 <---------bZIP60(1)        <---------ANAC58               <---------WRKY38(1)      --------->ANAC58 --------->bZIP60(1)        <---------ANAC58              ------------>CBF          --------->ANAC55(2)--------------->AtSPL8  *TSS            ----------->GT1 ----------->RAV1(1)          <---------O2 <----------DOF2 <---------MYB52(1)         --------->ALFIN1   <---------ALFIN1     --------->YAB1--------->SPL7<----------DOF2       --------->ALFIN1  --------->PCF2 --------->ANAC55(1)<---------------AtSPL3<----------DOF2   <-   tctttccaagtgtgtggtcaatactcagtcccacagagaaacacctaacattcaaaacgacgtcgtacttcacttttttctttctttcgttttttgtgtt  12945200                                                                              ---------->DOF2 -------                                               <---------ICU4         --------->AtLEC2     --------->LBD16                                              <---------YAB1      ------>NtERF2           --------->ANAC46                                    <---------AHL20(2)           --------->RAP2.6(2)     <---------LBD16             --------->ATHB12       <-----------GT1            --------->At4g35610     -------->P   < --------At4g35610  --------->CCA1(2)      <---------YAB1   ---------->DOF2  <---------WRKY12 -------   caactgtgactgtcttcattagatttgagactatctatttacattctgattatttcttaagaagaagcggccatggaagtcaaaggagcaacccggagct  12945300                                                          --------->LBD16                                                         <---------TOE1(1)                                                       ------>ZmHOX2a(1)                                                      --------->TOE1(2)                                                   --------->ARR14(2)                                                   <---------ARR14(2)                                                 <---------MYB46(3)                                                 <---------HSFB2a(1)                                                 --------->HSFB2a(1)                               <-                                                 <---------DEAR3(2)                          <-------                                                 --------->HSFC1(2)                   <---------At4g35610                                                <---------DEAR3(1)                    --------->At4g35610 --------->YAB1                               ------------>AtMYB77                    <---------ZAT2 -->At4g35610                   <------ZmHOX2a(1)<---------HSFC1(2)------->TEIL       --------->ZAT2 ---------YAB1             <---------REM1(1) --------->ANAC46  <---------------AtSPL3------->TEIL<--- -->GLK1(1)           --------->CCA1(2)  --------->ARR11(3)<---------TOE1(2)      <---------ANAC55(2)   ctatcatagttccttctgttcaagagatggtgaaggagaagatgatcacgacggttcctccgaggtatgtacggtctgatcaagacgtagctgagatagc  12945400                              --------->YAB1                           --------->WOX13(1)                        ------>ZmHOX2a(2)                           --------->ARR14(2)         <-----                       <------ZmHOX2a(2)                            <---------GLK1(2)         -------                      <---------ARR11(3)                            <---------ARR14(2)  <---------WRKY18(1) --------MYB52(1)     --------->ARR14(2)                    --------->TOE2(3)      --------->ANAC58 --GLK1(1)   --------->ANAC46<---------ATHB12               ------->GAMYB          --------->ANAC58 ------MYB46(3)       <---------ARR14(2)                   --------->MYB46(3)<---------WOX13(1)<-----   cgttgattctggtctaagaaaccagatcccaatcatagacatgagtcttctgtgttcttcaacctccatggattctgagattgacaagcttgactctgct  12945500  Previous    Next  AGI:  At4g25290.1    Description:  deoxyribodipyrimidine photolyase family protein / DNA photolyase family protein. similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT4G36530.1); similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT4G36530.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO14520.1); contains InterPro domain Alpha/beta hydrolase fold-1 (InterPro:IPR000073); contains InterPro domain DNA photolyase, N-terminal; (InterPro:IPR006050); contains InterPro domain Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729) Range:  from: 12941496    to: 12945004    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g25300.1    Description:  oxidoreductase, 2OG-Fe(II) oxygenase family protein. similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G25310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70279.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283) Range:  from: 12945183    to: 12946788    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version