Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 <------ZmHOX2a(1)                                                                              ----------->GT1                                                                        --------->ARR11(3)                                                                        --------->ARR14(2)                                                                        --------->GLK1(2)                                                                        <-----------ARR10--------->ANAC58                                                                        <---------ARR14(2)                  --------->At5g28300     <-----------GT1               <---------ARR11(3)           --------->ANAC46            --------->ANAC58            ----------->GT1       --------->ANAC58        <-------TEIL                   --------->ANAC58          <---------LBD16      --------->TOE1(2)    --------->HSFC1(2)                 ----------->GT1           ----------->GT1      --------->TOE2(2)    <---------HSFC1(2)          <---------REM1(1)         ----------->RAV1(1)<---------TOE2(3)   catggaaacatccatggcacggtgtattgacataatgtagcaagttacaaacttacaatgcaacatatggggaaaatctgaggaaaaacataagaaacga  12930000                                                                                                  ---                                                                                                  ---                                             <---------YAB1                                      ----                                          <---------AHL20(2)         <---------AHL20(2)          ----          --------->TOE1(3)            --------->AHL20(1)   --------->GLK1(2)               ---------          *TSS      --------->YAB1     <---------AHL20(1)  --------->YAB1              ------>NtERF2          --------->TOE2(3)         --------->AHL20(2)--------->AHL20(2)              <---------ETT(1)     --------->TOE2(3)         ----------->GT1        ------------>CBF <---------TOE2(3)    ---------  ----------->RAV1(1)  --------->YAB1<---------AHL20(2)   <---------ATHB12            --------->LBD16   tgaacaacataaacttaactaataagaataatgtggtattatatattatgaaaaaattcaataatctgtttttaatgtaagttaaatcccgaccaagaaa  12930100         <---------RVE1(1)         <---------CCA1(1)        --------->AHL20(1)        <---------ARR11(3)                                 <---------ICU4    ---------->DOF2                          <---------ARR11(3) -------->GT1                                --------->ARR14(2)                  <----------DOF2 ------>YAB1                     <-------TEIL<-----------ARR10       <-----------GT1 ------->GT1          <---------GLK1(2)      --------->ARR11(3)     <---------AHL20(2) ----->ICU4        <---------ALFIN1        --------->LBD16<---------ATHB12      --------->TOE2(3)   - >ANAC58--------->ARR11(3)   --------->HSFB2a(2)      ------>ZmHOX2a(1)  ------->GAMYB            <-- >ANAC58<---------AHL20(1)   <---------HSFB2a(2)     --------->TOE2(3)<-----------GT1       <--------   tgataaaaaagatatttgttcccacattcttctggtacatgtttccaggtcttctcctcaatctttgcattttaacgctcttcctttaatacattttttt  12930200            --------->YAB1            <---------ICU4            -------->HAHB4                   --------->ANAC58           <---------ATHB51                  --------->ANAC58         <---------ICU4                     --------->ZAT18         --------->YAB1                     <---------ZAT18        --------->AHL20(2)          <-------TEIL                                                 ----        --------->ICU4          <---------------AtSPL8                                ----------->GT1        <---------AHL20(2)      --------->DAG2                                  <---------HSFB2a(2) -------->ZAT6            <---------------AGL15    --------->YAB1               --------->HSFB2a(2) ---------GT1 <---------YAB1   ---------->DOF2   --------->ANAC58             <-----------GT1<------- -AHL20(2) --------->ICU4----------------->AGL3  --------->ANAC58         <----------DOF2  ----------   ttacactgtattaattatgagataaaccccaaaaaaagtacattggtacacaagcataaatacaaaaatatgcatgcttttttcagaactgtttaaaggt  12930300                                                                                    <---------ANAC58                        <---------ANAC58                                      --------->DAG2                        <---------ANAC46                                     ---------->DOF2                        <---------ANAC58                             --------->AHL20(2)           ---   <----------DOF2  <----------DOF2                                  --------->AHL20(1)           <-- ------>DOF2     <-----------GT1                                    --------->YAB1  <---------ANAC58 --TOE2(3)    --------->ARR14(2)                                  --------->AHL20(2)<---------ANAC46 >DOF2        <---------ARR14(2)                        <----------DOF2--------->YAB1          <-----   aaagcctttttctgcaaattttcttttcgtgtatgaccaaaaaaaaaaaaaaaaaaaactttattctaaaaaataatagaaaagtagtgtgtcttcatat  12930400                                                                                                    -     <---------ANAC58                                                                              <-     <---------ANAC58                   <----------DOF2                                            --     <---------ANAC46             ----------->HVH21                                     <---------ICU4 ------>ZAT14                  <---------ALFIN1                                   --------->YAB1<---- -------ZAT14                <---------ALFIN1       <---------ANAC58          <-----------GT1   ----- -------CBF *TSS             ----------->RAV1(1)    <---------ANAC58 <---------MYB52(1)--------->ICU4   tgcagtgtcttgtaagaagaaattcaaaaacccacactgacactttaacacattgcttcgtcttctctaccgtttcgatttcactcttaattatgtcaaa  12930500                                                     ------>NtERF2                                                   --------->RAP2.3(1)                                                   --------->ORA47(2)                                                   <------NtERF2                                                  <---------ORA47(2)                                                  <---------ATERF1(1)                                                  <---------RRTF1(1)                                                  ------>NtERF2                                                  <---------ERF1                                                  <---------DEAR4(2)                                                  <---------RAP2.3(1)                                                 --------->ATERF1(2)                                                 <---------ATERF1(2)                                                 <---------RAP2.6(2)                                                 <---------DEAR3(1)                                                 <---------RAP2.3(2)                                                 <---------RRTF1(3)                                                 <---------RRTF1(2)                                                 <---------ANAC46<---------ZAT2                                                 <---------RAP2.3(3)      <----------DOF2                            <---------DREB2C(2)       <----------DOF2 <---------MYB52(1)                           <-----------RAV1(1)--------->At4g35610 -------->LBD16--------->YAB1             <----------DOF2        --------->ZAT2   ------>ZmHOX2a(1) --------ANAC55(2)                        <---------DAG2         <---------At4g35610 ------->ANAC55(2)                     ------>MYB46(1) <---------ANAC46    ------>ZmHOX2a(1) -----ARR14(2)<---------YAB1           ------>MYB83--------->ATERF1(1)<---------ANAC58 ---->ARR14(2)--------->ICU4         <---------MYB59--------->DEAR3(1)<---------ANAC58 <----------DOF2   tccgtaagcttttgtgatcatcaacaccaaaaaaaaaaacctaactttatggcggcgacttgttctctgctcgcgtcctttctcctctgctttgctcttc  12930600                     <---------ARR14(2)                     --------->ARR14(2)                     --------->PCF5                    --------->ATERF1(1)                    <------NtERF2                    ------>NtERF2                   ----------->HVH21                   <---------SPL7                 <---------At4g35610                 --------->At4g35610                 ------>NtERF2                                                               <-------               <---------DEAR3(1)                                                            <-------               <---------RAP2.6(2)                                                           <-------              <---------LBD16                                                                <-------          <----------DOF2                                                                    <------MYB46(1)         <---------ANAC58          ------>ZmHOX2a(1)                              ------>ZmHOX2a(1)         <---------ANAC58   <---------ANAC58                                     --------->TOE2(3)  <       <---------ARR11(1)   <---------ANAC58            <---------MYB59         <-----------------AGL1      <---------MYB52(1) <----------DOF2             <-----------GT1        <---------ANAC58 <------MYB83  ------>NtERF2<---------RAP2.3(2)--------->TOE2(2)<---------ANAC58         <---------ANAC58---------  --------->LBD16--------->ATERF1(1)             <-----------ARR10         <------NtERF2    <-------- --------->DEAR3(1)<---------ATERF1(1)    <---------ZAT14                <---------DEAR3(1)<-------TEIL --------->ANAC46<------NtERF2    --------->TOE1(2)<---------ANAC58    <---------ALFIN1  <---------GLK1(2)   tctccgccgtttctttcgcggcggaccctttcgtctcctacgacttcagagtttcttacctcactgcttctcccctcggcgttcctcaacaggttcggtg  12930700                               <-------TEIL                               <---------ZAT14 --ANAC58             <---------ARR11(3) --ANAC55(1)          --------->GLK1(2) --ANAC46        ------>ZmHOX2a(1)              <---------GLK1(2) --ANAC58-------->P   --------->ARR11(3)      <---------TOE2(3) -----------GT1  --------->LBD16 <---------ANAC46       <----------DOF2 >MYB52(2)  <----------DOF2<---------TOE1(2)  <---------TOE1(3)        <-------TEIL         <-------- -DEAR3(1) <---------DAG2<---------LBD16    ---------->DOF2           --------->GLK1(2)    <---------DAG2   ttttactcacttacctttcctgaaaatctcgggttcagtgttttagtaaaggttctcgctttcgattgagagattcaatggcctcttagaatgccttttg  12930800                            ------>ZmHOX2a(2)                          <---------ARR11(3)                          --------->ARR14(2)         --------->ANAC58 <---------ARR14(2)                 <---------TOE1(2)                 <-----  --------->HSFB2a(2)  --------->HSFB2a(2)           <---------At4g35610            <---------TOE2(3)  <---------HSFB2a(2) <---------LBD16                --------->At4g35610           ---------->DOF2 --DOF2  --------->ANAC58 <---------AGP1            --------->MYB59     <----------DOF2      <-------   gtttctgaaactcgcattcttacctctggatctatatatacagtgtgtttgagttagctatcgcaagtttctctctttcggtctctaaagttgatttaaa  12930900  Previous    Next  AGI:  At4g25235.1    Description:  Encodes a ECA1 gametogenesis related family protein [pseudogene] Range:  from: 12929757    to: 12930010    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g25240.1    Description:  SKS1 (SKU5 SIMILAR 1); copper ion binding. Identical to Monocopper oxidase-like protein SKS1 precursor (SKS1) [Arabidopsis Thaliana] (GB:Q8VXX5;GB:Q9SB39); similar to SKU5 (skewed 5), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G12420.1); similar to SKS2 (SKU5 SIMILAR 2), copper ion binding [Arabidopsis thaliana] (TAIR:AT5G51480.1); similar to SKS3 (SKU5 Similar 3), copper ion binding [Arabidopsis thaliana] (TAIR:AT5G48450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70326.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42682.1); similar to hypothetical protein OsI_033112 [Oryza sativa (indica cultivar- Range:  from: 12930412    to: 12933902    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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