Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           <------ZmHOX2a(2)                                                  --------->ARR14(2)                    ---------->DOF2               <---------ARR14(2)             --------->LBD16                      --------->AGP1       <---------DEAR3(1)            --------->LBD16                      --------->At4g35610   --------->DEAR3(1) ---ZAT6   --------->HSFB2a(2)               <-----------HVH21         <---------ETT(2) -->ALFIN1 <---------HSFB2a(2)             <-------TEIL <---------ARR11(3)       <-----------GT1   -- -ANAC46  ------>ZmHOX2a(2)          --------->ICU4<------ZmHOX2a(2)   --------->ETT(2)  >>>>>>>ZML2   tgaaagttgtgatcccgaagatgaaagaacaagagagaaatgatgttcgtcagatcgagatcaactaaaaacgtcgacgtttttttctgttctagttttg  12917900              --------->YAB1       <----------DOF2    <---------ARR11(3)              --------->ANAC58                                                <    --------->ARR11(3)         --------->MYB59                            ----------->GT1        <---   <------MYB46(1)       <---------ZAT14                                 --------->DAG2   <---------ANAC58   <------MYB83       <---------ANAC46  <---------MYB46(3)             ---------->DOF2    <---------ANAC58 ------->ATHB12     --------->ALFIN1--------->ANAC58           ---------->DOF2         <----------DOF2   ttgataggtctttgaataagaagtgtgtgtagtttggcacggtcgatgttgagtcatgtagtctctaaagactaaaaggttatatgtttctttcttgaga  12918000                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               <-----               <---------ANAC58                                                               <------               <---------ANAC46                       <---------AHL20(2)               >>>>>>>>>AtCCA1           <---------ANAC58                          <---------AHL20(2)             <---------MYB59           <---------ANAC58                          --------->AHL20(2)       <----------DOF2<------- <---------MYB46(3)                              --------->ICU4  ------>ZmHOX2a(1) --------->At4g35610 ---------AtMYB61                         ---------->DOF2       <---------MYB59    <---------At4g35610 ------DEAR3(1)<---------ANAC58         <---------ATHB12       ----------------->AGL1  >>>>>>>>>AtLHY   cggtggttttttgtcttgcttaaaccaaaatttgcattccaaatcaaagcactaattaaataagttcctaatcgtgtattcttttagctaactcggtcgg  12918100 ----DEAR3(2)    <---------YAB1         --------->ARR14(2) -MYB83<----------DOF2                  ------->TEIL ----MYB46(3)<-------GAMYB              <---------ARR14(2) -MYB46(1) <---------TOE2(3)    <---------HSFB2a(2)                         <------ZmHOX2a(1) ---DEAR3(1)<---------MYB46(3)  --------->HSFB2a(2)                  <------ZmHOX2a(1)      <-------- --ORA47(1)---------->ID1  <---------At4g35610                <---------ETT(2)    <----------DOF2   tttacatgcctttgtggttatgagactggagcttatggaacgtatttgggtttaaaattttctgtagactaggaactaggaagactttaagacgaattct  12918200              --------->ETT(2)        --------->MYB52(2)                        --------->MYB59         <-------GAMYB    <---------ANAC58                           <-----------HVH21        --------->ZAT18    <---------ANAC46                       --------->DAG2              <---------ANAC58    <---------ANAC58                      ---------->DOF2              <---------ANAC46          ----   <------NtERF2                      <---------ANAC55(2)              <---------ANAC58 ------------- <---------DEAR3(1)                 <---------ANAC46        --------->HSFB2a(2)       <---------ALFIN1 -ARR14(2)    <---------ETT(2) --------->YAB1 <---------ZAT6<---------HSFB2a(2)   --------->At4g35610   gaggctgcgtaagttgtcgacggactggtctattaataacgcgtaaaagtgttaggcccgttcgagtagaatagcgcgttggacagcccaacttgaatga  12918300                                                                                               <-----                                                                                               ------                                                                                              <------                                                                                              ------>NtERF2                                                                                             --------                                                                                             --------                                                                                            <------NtERF2                                                                                            ---------                                                                                            ---------                                                                                --------->ANAC58  ---                                                                              ---------->DOF2<-------                              ----------->GT1                            ---------->DOF2   ------>NtERF2                  <----------ID1                                --------->TOE1(3)    <---------ARR14(2)              <---------AHL20(2)                                <---------MYB59 --------->ANAC58<----             --------->AHL20(2)                  --------->ARR14(2)   --------->TOE2(2)    <---------ATERF1(1)       <----------DOF2 ---------->DOF2           <---------ARR14(2)   --------->TOE2(3)    <---------RAP2.3(1) --->TEIL   <---------YAB1 --------->ALFIN1      <---------GLK1(2)    --------->TOE1(2)   <---------DEAR3(1) -------->WRI1--------->AHL20(2)      *TSS  --------->MYB52(1)  --------->TOE2(3)    --------->ARR14(2)   atcgatcgacttttattaaaaaaacaaaagtagggcaaaaaacaaaaaacagaacctcgacattaacctaaacctaagagcaaagcaaatcgacggcgac  12918400                 ------>ZmHOX2a(2)                 =================HOX2a_HOX2a                <---------GLK1(1)                ==================HOX2a_HOX2a                <------ZmHOX2a(2)                --------->GLK1(1)       <---------ARR14(2)       --------->ARR14(2) -NtERF2 --------->MYB46(3) --->ATERF1(1) <---------AGP1                              --------->DEAR3(1) ---ATERF1(1)  <-----------ARR10                          --------->ANAC58       --------->ETT(2) --->HVH21     --------->ARR11(3)                         <------NtERF2      <---------AtMYB61 ->DEAR3(1)    --------->ARR14(2)                         --------->ANAC58   --------->ALFIN1 >ATERF1(1)    <---------ARR14(2)                        ------>NtERF2<------NtERF2  --------->ANAC58 >RAP2.3(1)    <---------ARR11(3)             <---------MYB46(3)    --------->ALFIN1 --------->ANAC58 -------->GT1  <---------ARR14(3)        <------------MYB.PH3(1)    <---------DEAR3(1)       ------>ZmHOX2a(1) --DEAR3(1)--------->LBD16 ------>ZmHOX2a(1)<---------MYB52(1)     <---------LBD16 ---------->DOF2 -----ANAC46  <---------CCA1(2)     --------->ANAC55(2)<---------ABI4(2) <------ZmHOX2a(1) ----------   gggaaaatagaaccgcagatctctgtctcctctctctctcgtaactgtttgttcgatggcaccgaagaaggcggaggaagtggtcgaaagccctcctgtt  12918500                                         <---------ARR14(2)                                         ------->TEIL                                         --------->ARR14(2)              --------->GLK1(2)         <---------CCA1(2)              --------->ARR14(2)   --------->ARR14(2)                                     <---------At4g35610              <---------ARR14(2)   --------->GLK1(2)           ---------->DOF2           --------->ARR14(2)             <---------GLK1(2)     <---------ARR14(2)      --------->LBD16               <---------ARR14(2)       >>>>>>>>>TBF1              <---------GLK1(2)    --------->ARR14(2)                ------->TEIL   --------->ZAT14      <---------At4g35610            <---------ARR14(2)                --------->GLK1(2)   <---------ZAT14      --------->At4g35610     --------->At4g35610             ---------->DOF2 ->RAV1(2)>>>>>>>>>TBF1 ----------->RAV1(2)     <---------At4g35610    <-----------ARR10<---------GLK1(2)   tccagtgaagaagaagaatctggctcatctggagaagaatctgaatcttctgctgaagttccgaagaaagtcgagtcttcgcaaaagcctgaatctgact  12918600                                                                   <---------At4g35610                     <---------ZAT14    <xxxxxxxxxxxxxxxxsmallRNA(i)         <-------GAMYB       <-----------ARR10       --------->PCF5                   =====================================       <---------ARR11(1)      <---------PCF2                   ---------->DOF2       --------->GLK1(2)    --------->HSFB2a(2)                <------ZmHOX2a(2)       ------->TEIL  <-----------------AGL1          <---------At4g35610     ========================       <---------ARR14(2)   <---------HSFB2a(2)      <---------ZAT2--------->At4g35610           ----       --------->ARR14(2)<---------ARR14(2)          <xxxxxxxxxxxxxxxxsmallRNA(i)               <----      <---------ARR14(1) --------->ARR14(2)     xxxxxxxxxxxxxxxx>smallRNA(si3)                  -----   ctgaaggcgaatctgaatcggagtccagttctgggcccgagcccgagtccgagcctgctaagacgatcaagctgaagcctgttgggactaaaccaattcc  12918700           ------>ZmHOX2a(2)          <---------At4g35610          <---------GLK1(1)          --------->At4g35610         <---------ARR11(3)         <---------AGP1         <---------ARR14(2)         --------->ARR14(2)                                     --------->At4g35610      --------->HSFB2a(2)                                       <---------At4g35610      <---------HSFB2a(2) --------->TOE1(2)                  <---------HSFB2a(1)  --------->TGA1a        ----------->RAV1(2)                 --------->HSFB2a(1)  <---------O2    ------>NtERF2                              <---------HSFC1(2)  --------->O2  --------->LBD16                              --------->At4g35610                -----  <---------TGA1a----------->HVH21                           --------->HSFC1(2)                ------ ===========bZIP_DOF    ------->TEIL               <----------DOF2                             ------ ===========MYC_MYB   <---------ZAT14      ---------->CDC5   <---------At4g35610              <------ ----->LBD16 --------->At4g35610        <---------------------WRI1 ----------->RAV1(2)        ------- -----HSFB2a(2) ------>NtERF2         --------->MYB46(3)     <---------ZAT2         --------->At4g35610 ---->HSFB2a(2)--------->RAP2.6(2) <---------WRKY12------>ZmHOX2a(1) ------>ZmHOX2a(1) --------->At4g35610   agagacgtctggatctgccgcgactgtacctgagagttcaacggctaagcgtcctttgaaggaagctgctcctgaagctattaagaagcagaagacatcg  12918800  Previous    Next  AGI:  At4g25200.1    Description:  ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6). Identical to Heat shock 22 kDa protein, mitochondrial precursor (HSP23.6) [Arabidopsis Thaliana] (GB:Q96331); similar to 23.5 kDa mitochondrial small heat shock protein (HSP23.5-M) [Arabidopsis thaliana] (TAIR:AT5G51440.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66697.1); contains InterPro domain HSP20-like chaperone (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20 (InterPro:IPR002068) Range:  from: 12917027    to: 12918063    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g25210.1    Description:  transcription regulator. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G00130.1); similar to unknown [Populus trichocarpa] (GB:ABK93310.1); contains InterPro domain Protein of unknown function DUF573 (InterPro:IPR007592) Range:  from: 12918338    to: 12919752    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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