Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <---------ANAC55(2)                                                          --------->ANAC55(2)                                                 --------->DEAR3(2)                                                 --------->ORA47(2)                                               --------->ANAC58                                  --------->HSFC1(2)     <-------TEIL                                  <---------HSFC1(2)<------NtERF2                                  --------->HSFB2a(1)  <---------ARR14(2)                                  <---------HSFB2a(1)  --------->ARR14(2) --------->ANAC58                ----------->ARR10 ------>NtERF2 --------->ANAC58                <-----------ARR10--------->DEAR3(1) -------->DOF2     --------->CCA1(2)           --------->ANAC46                  <----------DOF2 ----ZmHOX2a(1)   <---------ARR11(3)           --------->ANAC58          <---------ANAC58 -----TOE2(3)     --------->ARR14(2)          --------->SPL7             <---------ANAC58           -   ggaaagaaactagagagcaagatttgagaactgagaagcttctctacatacgccgacgatacgtctgtcaaattggcgagatgcttttatattctcttca  12913600                                                                     --------->ANAC58       <---------GLK1(2)                                         --------->HSFB2a(2)      --------->ZAT2                                         --------->GLK1(1)      <---------ZAT2                                        <---------ARR11(3) --------->ANAC58      --------->At4g35610                                   --------->ARR11(3) --------->ANAC58      <---------At4g35610           <----------DOF2     ---------->DOF2--------->YAB1       <------ZmHOX2a(1)   ------>ZmHOX2a(1)           ---------->DOF2      ----------->GT1  --------->ANAC58   ------>ZmHOX2a(2) ----->ZmHOX2a(1)             <---------AHL20(2) --------->ANAC46<---------HSFB2a(2)--------->ICU4   tcctcctcagcttcgctgtgtttagagaaaatttaaagcttttacatgtataagcagttaaagatttctacaagcataaacaagaaatgatcgaggaaga  12913700                                                                  --------->AtMYB61                                                                 <---------HSFB2a(1)                                                                 --------->MYB46(3)                                                                 --------->HSFC1(2)                                                                 <---------HSFC1(2)                                                                 --------->HSFB2a(1)                                                               --------->ARR14(2)                                                          <-------GAMYB                                                         <------MYB83                                                         <---------MYB46(3)                  <------MYB83                           <------MYB46(1)                 --------->ALFIN1                       <---------AtMYB61                <--------P                           <---------ARR14(2)             <---------TOE2(3)                    <---------TOE2(2)     ----------->TGA1             <---------TOE1(3)      <---------ANAC46 --------->ARR14(2) --------->WRKY12     <---------ANAC58              <---------------------WRI1<------MYB46(1)      <---------------AtSPL8     <---------ANAC46              <------NtERF2  <---------TOE1(2)     ----------->HVH21     <---------ANAC55(1)  =================================HOX2a_HOX2a----------->RAV1(2)     --------->ANAC55(2)  ------>ZmHOX2a(2)   <------NtERF2<--------P --------->At4g35610          --     <---------ANAC58    ==================================HOX2a_HOX2a<---------At4g35610       <----     <---------ANAC55(2) <------ZmHOX2a(2)    <---------LBD16<------MYB83------>NtERF2        -------   <-----------GT1<------MYB46(1)<---------DEAR3(1) <------ZmHOX2a(1) --------->LBD16--------->MYB52(1)   acgaattacgtgtttgaggttggagcgatcggaagacggcgagaaggcctcggaggatttggttggaacctccgctgacgagaaatggaacggagtaagg  12913800                   <------NtERF2                   --------->At5g28300      --------->ANAC46                          --------->MYB59      --------->ANAC58        --------->HSFB2a(2) <------ZmHOX2a(1)      --------->ANAC58     <-----------GT1    --------->ICU4                           --------->TOE1(3) --------->GT1    --------->LBD16      <---------At4g35610                             --------->TOE2(3) -------HVH21    --------->ANAC46      --------->At4g35610                     <---------TOE2(3) -->MYB59       <---------LBD16   --------->CCA1(2)   <------ZmHOX2a(1)--------->GLK1(2)      <------   tcagtgaaacgcaattttcgcggcaaatttttcgagatttgagatgaaattaggaaggagaacaagaagatagaatcagtagaggtttaccttagacttt  12913900                                          <---------ARR14(2)                                      <-------TEIL                                     --------->CCA1(2)                                     --------->ARR14(1)                                     --------->GLK1(2)                                    <---------GLK1(2)                                    --------->ARR11(1)                     <------ZmHOX2a(1)                             --------->At5g28300                         <---------TOE2(3)         <-                            --------->LBD16                 --------->AHL20(2)                  -----                           --------->ATERF1(2)   ----------->GT1     <---------ARR14(2)        ------                           <---------ATERF1(2)--------->TOE1(2)  <---------LBD16      <---------ANAC46                   <---------GLK1(2)<---------ARR14(2)      --------->AHL20(1)        <---------ANAC58   ----------->RAV1(2)    <---------LBD16 --------->ARR14(2)<---------AHL20(2)        <---------ANAC58 ----DOF2         <------NtERF2     --------->ARR14(2)     --------->AHL20(2) ---------->DOF2 -------   tgttcgcctgaatccatggcagagtctcgccggtaaaagattcggaaacgagggaaaaaaaaaaaattggggatttaggaaaaagatggcttcgaacccg  12914000                                                                                                    <                                                                                                    <                                                                                                  <--                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                <----                                                                   <----------DOF2             ------     <---------ZAT14                                              --------->YAB1               <-----     --------->ZAT14                                              <---------ICU4               <----- --------ARR11(3)                                                <---------ATHB12           <-------- ---->LBD16                   ------>MYB46(1) <---------DAG2   --------->WOX13(1)          ---------- --->ANAC46             *TSS  ------>MYB83    <----------DOF2------------>CBF    <----------DOF2----- -->TOE1(2)       --------->At4g35610  ---------->DOF2    --------->MYB59<-----------TBP  <----------   agacctctgtagtactgaatagctggataaccaaatgacttaatagcgcttttagtaagttaagtcaatctttatatttatagctttggaaattacaatt  12914100    <---------YAB1   <-----------TBP   <---------AHL20(2)   --------->AHL20(2) <---------YAB1 ---------AHL20(1) ---------AHL20(2) -------YAB1 --->ATHB1 -----ICU4 ---->ATHB51 ----HAHB4                                          <---------WOX13(1) --->ICU4                                         --------->ATHB12 ----ATHB51                                      <---------YAB1 ----YAB1                                   --------->ARR14(2) -YAB1                               <---------ANAC46 -->CBF                              <---------ANAC58 ---->YAB1    <----------DOF2        <---------ANAC58                               <---------AHL20(2) -GT1  <-----------GT1 ----------->GT1      <---------ARR14(2)                      --------->AHL20(2)   attatttttatacattctttgtgagaagtaaacacttctacgtgtgtatatgtgattggatagacatttttagatttcatgtctaattttttgtataagt  12914200                                                                              --------->HSFB2a(2)                                                                              <---------HSFC1(1)               ------->TEIL                                                   <---------HSFB2a(2)            --------->ALFIN1                                               --------->ARR11(3)         <---------TOE1(3)                                          --------->YAB1            <------         <---------TOE2(3)             ----------->GT1   ------->MYC3     <---------CCA1(2)   <------   <---------YAB1             --------->MYB52(1)         <-------MYC3   <---------CCA1(2)     <------   atattttcattaaggtgtatgtagaaattgcataacgaaatttgtaatacacattaacacatggcttcaatcgtatatatctagaagtagaagactgcgt  12914300                                                                          --------->ANAC55(2)                                                                          <---------ANAC55(2)                                                                        <-----------GT1                                                                    --------->AHL20(2)                                                                    <---------AHL20(2)                                                                    <---------YAB1                                                                   <---------AHL20(2)                                                              <---------TOE2(3)    <---------TOE2(3)                                                             <-----------GT1      --------->MYB52(1) ---ANAC46                                                 <---------WOX13(1)    ------>ZmHOX2a(1) ---ANAC58 <---------ANAC58   --------->MYB46(3)        <---------YAB1  <---------AHL20(2) ---ANAC58 <---------ANAC58--------->MYB46(3)     --------->ZAT18  --------->AHL20(2)          <-----   cttgaattagatagcgagttctggcatcaacaacaatccagtttgcaaaatgtgcaatgtgattaacattttaattacatgtcctaacgtttgagttatt  12914400                                               --------->ANAC58      ---------->DOF2                                               --------->ANAC58 ----------->GT1                                               --------->ANAC46 <---------------AGL15                                  <---------ARR14(2)          <---------ANAC58        <---------ARR11(3)        --------->ARR14(2)          <---------ANAC58     --------->TOE2(3)            --------->GLK1(2)           <---------ANAC46             <--------- ----YAB1                <----------DOF2------->TEIL      <----------DOF2          <-----------GT1   agagaaacattatctctgttcttcagtcttttggagaatatggaccctcaagctactctcctttgcctgttaaaagaaaattatctcaccattttagcct  12914500  Previous    Next  AGI:  At4g25180.1    Description:  DNA-directed RNA polymerase. similar to DNA-directed RNA polymerase III RPC4 family protein [Arabidopsis thaliana] (TAIR:AT5G09380.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70140.1); contains InterPro domain RNA polymerase III Rpc4; (InterPro:IPR007811) Range:  from: 12911560    to: 12914024    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g25190.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G30710.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ50142.1); contains InterPro domain Protein of unknown function DUF566 (InterPro:IPR007573) Range:  from: 12914219    to: 12916085    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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