Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         <---------MYB52(2)                                                      --------->ANAC58                                                      --------->ANAC55(2)                                                   --------->At5g28300                                                   <---------MYB52(1)                                                  --------->LBD16                                                 --------->LBD16                                           <---------ANAC58                  <---------ANAC58                  <---------ARR14(2)       <---------ANAC58                  <---------ANAC58              <-----------------AGL3    <---------CCA1(2)                    <---------ANAC46             ------->TEIL           ------>ZmHOX2a(2) --------->ANAC58       <---------ANAC55(1)          ----------->HVH21       --------->ARR11(3)  <---------ANAC55(2)    --------->ANAC55(2)        --------->At4g35610       <---------ARR11(3)<--------P               <---------ANAC55(2)     --------->LBD16          --------------------->WRI1               <---------YAB1 <---------ARR14(2)      <---------At4g35610    <---------LBD16  <------ZmHOX2a(1)           <------MYB46(1) --------->ARR14(2)      --------->At4g35610<----------DOF2----------->RAV1(2)               <------MYB83 -GT1------>NtERF2--------->ARR14(2)====================================HOX2a_HOX2a      --------->ATHB12   tcagttccgcctctgaaccgtatttggagctgtttagatcgtatagctttcccggtaagtaacctgaggaatgaagattgcgtgagtaacaagattggta  12853500                                     <------ZmHOX2a(1)                                  <-----------RAV1(2)                                               <                               --------->TOE1(3)                   ---------->DOF2                  <                              <---------HSFC1(2)               --------->ANAC58                  ----                      --------->ARR14(2)                       --------->ANAC58                  <---                      <---------ARR14(2) --------->MYB52(1)  <------ZmHOX2a(1)                   <---                --------->DAG2--------->HSFC1(2)          <------ZmHOX2a(1)                      <---               ---------->DOF2<---------HSFB2a(1)       --------->ALFIN1                --------->WRKY38(1)        ---------->DOF2       --------->HSFB2a(1)      <------ZmHOX2a(1)               <---------MYB52(1)   tgtgaatgtgtaaagagtaaagcagaaatggaaccttcaggagcaacggattgagaaggaggaggaagccaaagatgagtgattccagcgttggctatgt  12853600           <---------ANAC46        --------->ALFIN1 <<<<<<<<WRKY18                                                                                     - ---------WRKY12                  ------>ZmHOX2a(1)                                             <---- ----->bZIP60(1)               ------>ZmHOX2a(1)                                          <---------ATHB12 ------ETT(2)              <---------ARR14(2)                                        --------->ANAC58 ------bZIP60(1)           --------->ARR14(2)                                 ---------->DOF2   <---- ------ANAC46        ----------->GT1 <----------DOF2                  <-----------GT1--------->ANAC58   cgtcaatggagttgtggagagaattgtagaatcctccttctttcttccatgactcccaattgaaactctgtttcacaattgaaagaaacccaataagtga  12853700                                                                            <------MYB46(1)                                                                            <------MYB83 --------->REM1(2)                                                        <XXXXXXXXXXXXXXXXXXXXMIR858 --------->ZAT14                                        --------->ALFIN1  <--------P <---------ZAT14       --------->ANAC58   --------->TOE1(3)       <---------ANAC55(2)---------------- -------->ALFIN1       --------->ANAC58  ----------->RAV1(2) <------ZmHOX2a(1)---------->DOF2 -----ANAC58      ---------->DOF2       ------->TEIL --------->DAG2    <---------TOE1(3)    --------- -----ANAC58  ------->TEIL      ---------->DOF2      <---------TOE2(3) <---------TOE2(3)-------------   gtgtgtagagtctgtgtatgtaaagaagcaaaactaaagacgaacctgaaacaataaggtggaggaaaacgtgaaggttggaaagacgatgaagaaaaga  12853800              <---------ANAC55(2)              --------->ANAC55(2)              <---------ANAC58              <---------ANAC55(1)              <---------ANAC46                                         <---------ANAC46              <---------ANAC58                         *TSS        <----------DOF2 -------->ANAC81                                     <---------ANAC58  <---------ANAC58 ->DOF2     --------->MYB52(1)            <---------YAB1    <---------CCA1(2)   <------------CBF ----------->ANAC81                 <---------YAB1   <---------ANAC58  <---------ANAC58           ---   agagaagagaagagtaacgtatggagagatgtcattgtctgattgtgaatggtttgcttcttctatctgctttgtgtgtttatattgagaccctaaacct  12853900                  --------->ANAC58             <---------MYB59             --------->TOE1(3)             --------->TOE2(3)       --------->TGA2(1)       <---------ANAC55(1)       --------->ANAC55(1)       <---------bZIP60(1)       <---------TGA2(1)       <---------ANAC58       --------->ANAC55(2)       <---------ANAC55(2)         <---------ARR14(2)       --------->ANAC58       <-----------HVH21       <---------ANAC58    <---------ANAC58       --------->ANAC58--------->ANAC58   --------->AHL20(1)       --------->ANAC46--------->ANAC46   <---------AHL20(1)       <---------ANAC46--------->ANAC58   --------->ARR11(3)       --------->bZIP60(1) <---------ANAC58      --------->MYB59<---------ALFIN1     <---------ARR11(3)      <---------ANAC58  <---------ZAT6  --------->ANAC58 --------->ARR14(2)             <---------ANAC58 ------>REM1(2)   --------->ANAC46<---------CCA1(2)            <<<<<<<<<<GT-3b ----------->GT1 ------   tgtagagttacgtaacctaaacgacacggccttgtcatatctgatatatttcttcatcagtctatttttcttgggaatgaaatgtgaatacatttacaag  12854000                                                                                          <---------ZAT18                                                                                          <---------ZAT14                                                                                          --------->ZAT18                                                                                       <---------ANAC46                                                                                       <---------ANAC58                                                                                       <---------ANAC58            <-----------ARR10                                                        <---------YAB1            --------->ARR11(3)                                                  --------->ANAC55(2)            --------->GLK1(2)                                                   <---------ANAC55(2)            <---------ARR11(3)------>ZmHOX2a(1)                               <-----------GT1 --->ANAC46--------->RVE1(1)------>ZmHOX2a(2)                <----------DOF2<-----------HVH21   gagttatggcaaaaaatctactctgtctgatcctagctctaaaatgagtcaagtatggtctccctttagacctccatttgtcacgttttgagtggacaat  12854100                ----------->GT1                                                                ------        --------->KAN4(2)                                                                      <-----       --------->KAN4(1)                                                                 <----------DOF2       --------->HSFB2a(1)                               ----------->GT1      --------->At5g28300       <---------KAN4(1)                                 <-------GAMYB       --------->RAP2.6(2)       <---------HSFB2a(1)         <---------At4g35610  ----------->GT1<---------WOX13(1)<---------DAG2      <---------KAN4(2)    <---------YAB1               <---------MYB46(3)   ----------->GT1   ------      <---------ARR14(2)  <---------ARR11(3)     <---------ANAC46    --------->ATHB12 <-----------GT1      --------->ARR14(2)  --------->ARR11(3)<-----------RAV1(1)  --------->DAG2    --------->TOE2(3)      ---------->TaMYB80 --------->YAB1  <---------AHL20(1)     ---------->DOF2    --------->TOE1(3)<   aggttgagaatattctaggggaaaaaatgatatttggagctaatatatgttgtttgggctgttaaaaaaagtgattgggccgtaacattaacttttccta  12854200                                                 ----------->GT1                                                <---------TOE2(3)                                <---                                                <---------TOE1(3)                                ----    --------->YAB1                  <---------AHL20(2)                                         <----- --->HSFB2a(2)                      --------->ATHB12                                   --------->HSFB2a(2) ----HSFB2a(2)                     <---------AHL20(2)                                  <---------HSFB2a(2) >ZmHOX2a(1)                       --------->AHL20(2)                  <---------TOE1(1)  <--------P ------ZmHOX2a(1)       <---------ZAT18      <---------MYB52(1)        <---------TOE2(1) <---------MYB52(1)   gaggaatcataaaacgaagaggctagagtacttgttatttattagacgttagggtaaaatagaattgagaagtactaggtaactcaattctggtagtcca  12854300                                        --------->ATHB12                                        <---------ICU4                                       --------->ICU4                                       <---------YAB1                   <---------ARR11(3)                                     <---------ICU4                     --------->ARR11(3)                                     --------->YAB1                    --------->YAB1                               --------->ANAC46               <---------TGA1a                              --------->ZAT18              ----------->HVH21  <---------GLK1(1)        <---------ANAC46 <---------AHL20(2)======================================= ------At4g35610          <---------------AtSPL8         --------->At4g35610       <---------MYB59 ----->At4g35610          --------------->AtSPL8         ----------->RAV1(2)--------->ICU4          < ------RAV1(2)   --------->ETT(2)   --------->ICU4       <---------At4g35610<---------YAB1  <--------   gatgaattctgaagtattgtctacatgtgatgtacaccataatgatttttttttaaaacatctgacctgtgaatgatcatgtttatctaacttactttga  12854400  Previous    Next  AGI:  At4g25000.1    Description:  AMY1/ATAMY1 (ALPHA-AMYLASE-LIKE); alpha-amylase. similar to AMY2/ATAMY2 (ALPHA-AMYLASE-LIKE 2), alpha-amylase [Arabidopsis thaliana] (TAIR:AT1G76130.1); similar to alpha-amylase [Ipomoea nil] (GB:BAC02435.1); contains InterPro domain Glycoside hydrolase family 13; (InterPro:IPR006046); contains InterPro domain Alpha-amylase, plant; (InterPro:IPR013775); contains InterPro domain Glycosyl hydrolase, family 13, catalytic region; (InterPro:IPR006047); contains InterPro domain Alpha-amylase, C-terminal beta-sheet; (InterPro:IPR012850); contains InterPro domain Glycoside hydrolase, catalytic core; (InterPro:IPR013781) Range:  from: 12851979    to: 12853855    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g25010.1    Description:  nodulin MtN3 family protein. similar to nodulin MtN3 family protein [Arabidopsis thaliana] (TAIR:AT5G50800.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68342.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71371.1); contains InterPro domain MtN3 and saliva related transmembrane protein (InterPro:IPR004316) Range:  from: 12854395    to: 12856551    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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