Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <------NtERF2                                                                               --------->At4g35610                                                                               --------->LBD16                                                                              --------->RAP2.6(2)                                                                              ----------->RAV1(1) ------NtERF2                                                       --------->ZAT6           -------- ------ABI4(2)                                                    ----------->RAV1(1)       --------- ----->ZAT18            -------->P    --------->YAB1             <---------WRKY38(1)  --------->MYB52(1) ->DAG2              <---------MYB52(2)                      --------->DAG2   --------->DEAR3(1) >DAG2        --------->TOE1(3)      <---------ATHB12       ---------->DOF2  --------->RAP2.3(1) >DOF2        --------->TOE2(3)    --------->WOX13(1)--------->At4g35610   --------->ANAC46----------   gcaccgattcaaaaaaccttaaaactaacctttgggccaatcagagacgaccctctgcttcaaaaagtcaacagtagaagccgcagaataccgaaaaggc  12851200                                                              --------->WRKY12                                                              --------->WRKY38(1)                                                              --------->WRKY45                      <                                                        --------->ARR14(2)                          -                                                        <---------ARR14(2)                          -                                                       <---------GLK1(1)                     ------>MYB83                                                       --------->GLK1(1)                     ------>MYB46(1)                                                       <----------TaMYB80                  <---------MYB59                                                       <---------CCA1(2)                   ------->GAMYB                                                      ---------->TaMYB80                 ------>MYB83                                                   ------>NtERF2                         -------->P <                                                 <---------LBD16                         ------>MYB46(1)                                                ------>ZmHOX2a(1)                       --------->MYB55(1) --------->GLK1(1)              --------->ARR11(3) --------->LBD16                     --------->MYB46(3) <---------GLK1(1)   --------->TOE1(3)    --------->HSFC1(2) <---------MYB52(1)        <---------MYB46(2) ->DAG2             ----------->RAV1(2)   --------->HSFB2a(1)--------->DOF5.7(2)       <---------MYB111(2) ->DOF2         --------->SPL7  <---------ARR11(3)--------->ANAC46       ----------->HVH21--------->MYB46(3) >DOF2  ------>NtERF2--------->TOE2(3)  <---------GLK1(2)   --------->At4g35610        <---------MYB111(1)   ccgatatcggagccatcgtacaacctgaatttgatatctatcgattcttcctccggcatatccgttgacttctctctgacctccgattaccaaccaaatt  12851300                                            =====================================HOX2a_HOX2a             ------>MYB46(1)               --------->CCA1(2)             ------>MYB83                  <------ZmHOX2a(2)           --------->MYB46(3)             <---------ARR11(3)           --------->AtMYB61              --------->ARR14(2)       <------ZmHOX2a(2)                  <---------AGP1                                  --------->ZAT18 --------->ARR14(2)                       <---------ARR14(2)                            <---------ZAT2 ---------ZAT2              --------->ANAC46------>ZmHOX2a(2)                           --------->ZAT2 -------->ZAT2              --------->YAB1--------->ARR11(3)    --------->DAG2      --------->YAB1 -------->At4g35610    --------->HSFB2a(2)--------->AGP1 ----------->GT1  <------ZmHOX2a(1) ---------At4g35610<---------GLK1(2)     <---------CCA1(2)     ---------->DOF2    --------->GLK1(2)--   ccagctccgatcaccaatcccgcttctcaaacacaactatttcagatctgaaaataggtctgaaaaaaagtagacaggaacgagaatcagagctcgcttc  12851400                                                                      --------->LBD16   <----------DOF2                                                                   ------>ZmHOX2a(1)   ------>ZmHOX2a(2)                                                                   ==========================HOX2a_HOX2a                                                             <---------HSFC1(2)       <------ZmHOX2a(2)                                                             --------->HSFB2a(1)     <---------ARR14(2)                                                             <---------HSFB2a(1)     --------->ARR11(3)                                                             --------->At4g35610     --------->ARR14(2)                                                             --------->ZAT2          <---------ARR11(1)                                                             <---------At4g35610     <---------ARR11(3)                                                             --------->HSFC1(2)     <---------CCA1(2)                                                       --------->GLK1(2)            <---------ARR14(1)                <----------ID1      <------ZmHOX2a(1) <---------GLK1(2)           <---------ANAC46 <-         ------------------------>ANAC81 ------------------------>ANAC81         <---------LBD16  <-- ------->MYB52(1)             ---------->DOF2      --------->ANAC46===========================HOX2a_HOX2a   gaaacgggatagaacaaaaaaacaaaaaacaaaaaagaggaagaatcaaacacacagaatcgaagcttcctccgaaatcgtgtttcggatctttgatttt  12851500              ---------->DOF2          <----------DOF2                                       <-------         --------->DAG2                <---------DAG2                                        <-------        ---------->DOF2               <---------ANAC58                                    <----------   ----------->GT1                <---------ANAC58                                <------NtERF2 --------->ALFIN1                 <---------ANAC58                               --------->MYB52(1) ----------->GT1                --------->ARR11(3)             ---------->DOF2   ------>NtERF2 <---------ANAC46               <---------ARR11(3)           <---------YAB1     ----------->HVH21 --------ANAC46             ---------->DOF2              ------>MYB83           --------->DEAR3(1) -------TOE2(3)          >>>>>>>>>TBF1<---------ANAC58   ------>MYB46(1)       --------->DEAR3(2)<---   gaggtgtgaaaaaagcgaaagaaggaagaagaaagagcttgcttttttcaagagtcaccaaatatcaaagttccttctcaagccgacggttttcactttt  12851600                                                                   <----------DOF2                                                         <---------O2                                                         --------->TGA1a                                                         <---------TGA1a                                                         =====================bZIP_DOF                       <----------DOF2                   --------->O2                   <----------DOF2                      <------NtERF2                   ================================================bZIP_DOF               <-----------GT1                         ------>NtERF2 <---------YAB1 ---DOF2      ---------->ID1   <-----------HVH21       <---------ATERF1(1) --DAG2       <-----------GT1  <-----------TGA1       --------->DEAR3(1)         XXXXXXXXXXXXXXXXXXXX -GT1<----------DOF2   ============================================bZIP_DOF   ------>ZmHOX2a(1) --------GT1 <-----------GT1 ---------->ID1*TSS      --------->DEAR3(2)<------------CBF   ttccttccttttttttttcccctttcttttcgtcgtcacttctacttcttctcaagccgacgtcttcaacttttattgtcctagccaaaaacgctgtcgt  12851700                                                                              --------------->AGL15                                                                              <---------------AGL15                                                                             <-----------------AGL2                                                                             ========================                                                                    <---------AHL20(2)                                                                    <---------YAB1                <--                                                                   --------->AHL20(2)             ---                                                                   <---------AHL20(2)          <-----                                                                   <---------AHL20(1)          <-----                                          <----------DOF2       --------->AHL20(2)         <---------ZAT14                                          <---------DAG2     --------->YAB1  <-----------------AGL3                                     --------->AtMYB61    --------->HSFB2a(2)<-----------------AGL1<-                                  --------->ANAC46   <<<<<<<<<TBF1 --------->AHL20(1)      --------->ZAT14 >MIR4228<-----------GT1   <---------ALFIN1      <-----------GT1--------->YAB1<---------YAB1   <-----   tttattcgaatttacctgtctaactgttcccacttcccaccatactttttttttcttcttctacaataatataattcgttctgattttggcagtattgtg  12851800                                                                 <---------AHL20(2)                                                                 --------->AHL20(2)                                                                 --------->AHL20(1)                                                                 <---------AHL20(1)         --------->YAB1                                          <---------ARR11(3) ================================MADS_MADS                   <---------AHL20(2) -------MYB46(3) <---------------AGL15              <------NtERF2--------->ARR11(3) -------->GT1    --------------->AGL15           --------->RAP2.6(3)                      --------->MYB52(1) ----ANAC46      <---------YAB1      --------->ARR14(2)     --------->AHL20(2)  ----------->RAV1(1) ----ANAC58<---------YAB1            <---------ARR11(3)   --------->AHL20(1)   <----------ID1 ------GAMYB<---------ICU4           <---------ARR11(1)   <---------AHL20(1) --------->ANAC58 ----ANAC58--------->ICU4           <---------CCA1(2)     <---------ARR11(3) --------->ANAC58   tggttaagacatcataattctgattttagtagggctccaaatcttatacgagtcggccaatatataatatattagttgtatgcaacaaaacaaaacgatg  12851900                                                                                       --------->ZAT18                                                                                       --------->ZAT14                                                                                --------->AtMYB61                                                                        <----------DOF2<---------ZAT18                   --------->HSFB2a(2)                                  ------>ZmHOX2a(1)           -                   <---------HSFB2a(2)                      --------->ZAT14  --------->ANAC46       <             <---------ICU4                                 <---------ZAT14  --------->ZAT6    <-----           --------->ANAC55(2)                       <----------DOF2   --------->TOE2(3)   <---------           <---------ANAC55(2)                  <----------DOF2    <---------CCA1(2)   <---------ZAT14   gaaactttccaatacttatttctacaagttgacacttcttcacttgaactcttttctttcactggagttgtatcctttaacaccactagtgctcttttta  12852000                                                                               <-------TEIL                                      <----------DOF2                         --------->CCA1(2)            <---------YAB1         <---------ARR11(1)             ---------->DOF2 --------->ANAC55(2)               --------->ARR11(3)           <---------AHL20(2)         <---------DAG2 -------->MYB59 --------->AHL20(2)<---------CCA1(2)        --------->AHL20(2)<---------ARR11(3) ---------TOE2(3)<---------AHL20(2)<---------ARR11(3)      <---------AHL20(2)--------->ARR14(2)     - ----AHL20(2)--------->YAB1<---------YAB1  <---------GLK1(2)   --------->AHL20(2)          <--------- -DOF2  <----------DOF2 <---------AHL20(2) --------->ARR11(3) <---------YAB1 <---------ARR14(2)    <-   tttaggtattctttatcattttatatttcattatacatatctttagatactgccaaaatgttttattaaaaaggaagaagatacattcgattacttttct  12852100  Previous    Next  AGI:  At4g24990.1    Description:  ATGP4 (Arabidopsis thaliana geranylgeranylated protein). Identical to Membrane-anchored ubiquitin-fold protein 3 precursor (MUB3) [Arabidopsis Thaliana] (GB:Q9SW27;GB:Q9ZRD4); similar to MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR) [Arabidopsis thaliana] (TAIR:AT3G26980.1); similar to unknown [Populus trichocarpa] (GB:ABK94581.1); contains InterPro domain Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000); contains InterPro domain Ubiquitin; (InterPro:IPR000626) Range:  from: 12849719    to: 12851643    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g25000.1    Description:  AMY1/ATAMY1 (ALPHA-AMYLASE-LIKE); alpha-amylase. similar to AMY2/ATAMY2 (ALPHA-AMYLASE-LIKE 2), alpha-amylase [Arabidopsis thaliana] (TAIR:AT1G76130.1); similar to alpha-amylase [Ipomoea nil] (GB:BAC02435.1); contains InterPro domain Glycoside hydrolase family 13; (InterPro:IPR006046); contains InterPro domain Alpha-amylase, plant; (InterPro:IPR013775); contains InterPro domain Glycosyl hydrolase, family 13, catalytic region; (InterPro:IPR006047); contains InterPro domain Alpha-amylase, C-terminal beta-sheet; (InterPro:IPR012850); contains InterPro domain Glycoside hydrolase, catalytic core; (InterPro:IPR013781) Range:  from: 12851979    to: 12853855    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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