Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   --------->ICU4                                <---------ANAC58                             ------->PIF5                             <-------PIF5                                                 --------->ANAC46                           ------>ZmHOX2a(1)  ----------->HVH21                           --------->ANAC58                     <-----------ARR10      --------->TOE2(3)             <---------MYB59 --------->ANAC58                    <---------ALFIN1  <-----------GT1       --------->ANAC46 ---------->DOF2   <-------TEIL     --------->O2<---------ANAC58         --------->TOE1(2)--------->TOE2(3) -->At4g35610     <---------ALFIN1   <-----------GT1   <-------TEIL      <---------ANAC55(2)       <-   gcaagttcatgttgtctctcccacatctcctcgtgcttattaacatccttgacgaagttcatacgaagttgaaatacctaaaagcccagaacaagacaca  12789400                                                                                 ---------->DOF2                                                           >>>>>>>>>TBF1        --------->YAB1                                            --------->ANAC58                   <---------ATHB12     -                                            --------->ANAC58               <---------ATHB12       <--                                            --------->ANAC46      <---------------AtSPL8        -----  ---------->DOF2                         --------->MYB52(1)  ---------->DOF2--------->WOX13(1) <---- --------WOX13(1)    --------->YAB1  <-----------GT1    >>>>>>>>>TBF1   --------->MYB46(3)     <-----   gattgaaagaaaattgcagaaaatcataagaaaaatgtattacaaaacgaaacatgaagaagaagaaaggagtacccatcaatcaaagagaaaccttgta  12789500                    <-------MYC2                                                    <----------DOF2                    ------->MYC2                                               ------->TEIL        <---------GLK1(1)                            <------NtERF2          ------>ZmHOX2a(1)        --------->CCA1(2)                            --------->LBD16        =========================       <---------ARR11(3)   --------->ARR14(2)      --------->RAP2.6(2)   <---------LBD16       --------->ARR11(3)   <---------ARR14(2)     <---------LBD16        ----------->RAV1(2)  --------->ALFIN1  ------->MYC3             ----------------->AGL1 <---------At4g35610 -------->LBD16     <-------MYC3         <-------GAMYB<------NtERF2--------->ARR11(3) -------LBD16       <-------PIF5        <---------MYB46(3)         <---------ARR11(3)               - ---->ARR14(2)      ------->PIF5        --------->MYB52(2)  <-----------HVH21 <---------GLK1(2)     - -----ARR14(2)     --------->ANAC58     ------>ZmHOX2a(2)  --------->WOX13(1) <---------CCA1(2) ----- ----CCA1(2)       --------->ANAC58    <------ZmHOX2a(2) <xxxxxxxxxxxxxxxxsmallRNA(s)           =====   tccggtgtagatatcagtggcacgagcccagaactgaaacgatcgttgccaaggccggaatccatcagagagcttctcctgaatctctttgaaatcgatc  12789600                                                                                <---------ANAC46                                                                              <---------ZAT14                                                                             --------->ALFIN1                                                                       <------NtERF2               --                                                                      <-----------HVH21            --                                 <------ZmHOX2a(1)                    <-----------TGA1             <-   ------->TEIL                <---------TOE2(3)                     <---------bZIP60(1)           -- ==HOX2a_HOX2a            <---------ZAT6                             <---------ANAC58           ----- -------->ANAC58        ----------->GT1            <---------TOE2(3) <---------ANAC58--------->At4g35610 -------->ANAC58    <------ZmHOX2a(1)        --------->DAG2          --------->TGA2(1)  <---------At4g35610 ->ZmHOX2a(2)     <---------TOE2(3)         ---------->DOF2          <---------ANAC46<---------At4g35610 ==========================HOX2a_HOX2a   <------ZmHOX2a(1)           --------->bZIP60(1)--------->At4g35610   gcatgcattttcgaagttttgaggaagagtgataaggatgagaggataaagttaagaattgtttatgtatggcgtcagagtggagtttgctgctctctac  12789700                               <---------AHL20(2)                <-----------HVH21                            --------->TOE1(3)                   <---------bZIP60(1)          -------- ----->TEIL ----------->GT1 --------->TOE2(3)     --------->ARR14(2)   --------->ANAC58      <------- ------->GLK1(2)           ----------->GT1        <---------ARR14(2)   --------->ANAC58     <-------- --------ARR14(2)   <---------At5g28300 <---------TOE2(3)       --------->bZIP60(1)         --------- ------->ARR14(2)  <-----------GT1    ---------->DOF2  <---------MYB52(1)                   *TSS ---- ---->ANAC46<---------ZAT6 <---------ANAC46       --------->GLK1(2)  <---------ALFIN1  ----------->GT1   gaatccattcgagagtgttaattactgtttcgttaaattgtaaaggaaacaaaatccgtttgtcttatgtcacactcactgtgagtcactggttataatt  12789800                <---------------AtSPL8                <---------TOE1(3)                <---------TOE2(3)                             ----------->GT1   ------------>CBF                                       --------->ARR11(3)  --------->ANAC58                                    <---------ICU4  --------->ANAC58                      --------->DAG2--------->YAB1                                - ->YAB1         --------->MYB59     --------->TOE2(3)--------->ICU4                             <---- --ICU4         --------->DAG2------>ZmHOX2a(1)  ------------>CBF<-----------GT1              <------ -YAB1          <---------------AtSPL3 ---------->DOF2<--------ATHB1    ------->GAMYB   <---------AHL20(2) >ICU4        --------->CCA1(2)     --------->TOE1(3)<---------ATHB12 -------->P        --------->AHL20(2) ----->MYB59 --------->ARR11(3)  <---------CCA1(2)   <---------YAB1<---------MYB52(2)   <---------AHL20(1)   aggcaggcaatagaagataaggtactaatctcctcaaatcttaaagtagtttacaatgatggtcttgttactaaccccagaccatatcaaaaaatttagg  12789900                                                                                         <---------LBD16                                                                                         --------->LBD16                                                                           --------->ANAC46                                                                         <-----------GT1<---------ANAC58                                                                     ------>MYB83       <---------ANAC58                                                                   <---------MYB59      <---------ANAC46                                                                   <---------MYB46(2)  <-------TEIL -                                                                  --------->ANAC55(2)<-----------HVH21                               ----------->GT1              --------->GLK1(2)       <---------TGA1a < --------->DOF2      --------->ANAC58                       <-----------ARR10<---------ZAT14        - --ZmHOX2a(1)        --------->ANAC58              <---------AtMYB61 ------>MYB46(1)--------->TGA1a<- ---TOE2(3)      ----------->GT1        ------>ZmHOX2a(1)  <---------GLK1(2) --------->ZAT14    >>>>>   aaaaaaggaacttactaaacagtaagaaacaaattgtaaatcctataagtgtgatggtgaagaatctcacctaattcactaaacagacgtccgtggaaga  12790000                                     ------->TEIL                            --------------------->WRI1             ------>ZmHOX2a(1) -------->ARR14(2)      <---------MYB55(2)                         <----------DOF2 ---------ARR14(2)      --------->MYB46(3)                 <------ZmHOX2a(1) -------->GLK1(2)      ------>MYB46(1)                 --------->TOE1(2)      <---------MYB59 --------GLK1(2)       ------>MYB83 <---------CCA1(2)  ------->GAMYB        ------->TEIL           -- >>>>TBF1         <-----------GT1------->TEIL         --------->MYB46(3)   <---------CCA1(2)     <---   agaatctgcaaaataccaagttaccaactactgtgtatgtatctctcacaagttcaaccaaggactgtcctttagatgtatctaatttgtgttcaattct  12790100                                                    <---------WRKY12                 --------->ZAT18                    <---------WRKY45                 <---------ZAT18         --------->ARR11(3)                 <---------ZAT14         <---------ARR11(3)       <---------GLK1(2)   ------->TEIL <---------CCA1(2) ------->MYB46(3)--------->ZAT14 <---------ANAC58   <---------WRKY38(1)         <----------DOF2 --------GT1  <---------ANAC46   <---------ANAC58  --------->WRKY18(1)     ---------->DOF2        <--   aaccattcagattatgaagtgtactaatgcatttttcttggtatatctatatggtcaactaatacaccttgtgaaacaaaagctttattttgtaagaggt  12790200                                                            ------->MYC3           --------->TOE1(2)                                                      --------->ANAC58           ------->TEIL                                                      --------->ANAC58           <---------YAB1                                                    ---------->DOF2             <<<<<<<<<<<<<<<<<LFY  <---------MYB46(3)                             <-------TEIL             <---------AHL20(2) <---------AtMYB61                        --------->MYB52(1)<-------MYC3  --------->AHL20(2) -------AtMYB61                           ----------->RAV1(1)      <------ZmHOX2a(1)   atggtggtcgttttctcttagatactagatagatgcgatgaaaacaacagattcaaaagccatatgcgaggaagaataaaatgaacattggagattaaac  12790300  Previous    Next  AGI:  At4g24810.1    Description:  ABC1 family protein. similar to ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT5G50330.1); similar to ATP binding / electron carrier/ heme binding / iron ion binding / protein kinase [Arabidopsis thaliana] (TAIR:AT5G50330.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO17208.1); similar to Os01g0904200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045121.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain ABC-1 (InterPro:IPR004147); contains InterPro domain Protein kinase-like (InterPro:IPR011009) Range:  from: 12786618    to: 12789792    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g24820.1    Description:  26S proteasome regulatory subunit, putative (RPN7). Identical to Probable 26S proteasome non-ATPase regulatory subunit 6 [Arabidopsis Thaliana] (GB:Q93Y35;GB:Q9SZX2); similar to FUS6 (FUSCA 6) [Arabidopsis thaliana] (TAIR:AT3G61140.1); similar to 26S proteasome subunit RPN7 [Capsicum annuum] (GB:ABK42076.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17207.1); contains InterPro domain Proteasome component region PCI (InterPro:IPR000717) Range:  from: 12790173    to: 12792732    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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