Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <-----                                                                                               <-----                                                                                            <--------                                                                                       --------->ARR14(2)                              ----------->HVH21                              <---------TOE2(3)<------ ->MYB46(3)            <------ZmHOX2a(1)                           <---------ARR11(3)  <---------ARR14(2)   taggttttagcaaacccattgtttaggacaatgtgacacaaaaatgtatagttgcaaaatgtgtttcaagaccatattttagattagcatatactaatca  12781500       ------->GAMYB <----------DOF2                                                                           --------->YAB1 ----ICU4                                                     <-----------GT1     ---------->DOF2  -- ------GT1          <---------At5g28300         --------->At4g35610               <---------AHL20(2) -ICU4--------->MYB46(3)                        <---------At4g35610            --------->TOE2(3)  --- ---ATHB12         <-----------GT1 <----------DOF2      <---------YAB1        --------->YAB1     ----   ctcctttaacagacctgaattttactgtctttggacccttttattgactgagctcattatgttttcacaaattatctcattcattaaaacgaatcagaat  12781600                                                     --------->AHL20(2)                                                     <---------ICU4                                             <---------YAB1                                             ----------->GT1                                             --------->ICU4        --------->TOE2(3)         ---------->DOF2--------->AHL20(2)                             ----- --------->GT1                  <---------------AGL15<---------AHL20(2)                         <---- ------>DAG2         <----------DOF2        <---------TOE2(3)                                   <---- ------>DOF2         <---------DAG2--------->DAG2<---------AHL20(2)--------->ATHB12--------->YAB1   aaagtgaatacattagtcttcaacttttttgttacaaaaagtggataatgtttaattttttcaataaactgatttgaaattagaaacataatttggataa  12781700                                  <---------CCA1(1)                                 <---------ARR11(3)                  <------ZmHOX2a(1)                                 --------->ARR11(3)                 <------MYB83               ------                   --------->AHL20(1)                   <-----------------AGL1                 ------                   --------->ARR11(3)    <---------AHL20(2)         <------MYB46(1)      --------->TOE2(3) ---->DAG2         <---------AHL20(1)    --------->AHL20(2)       <--------P        <---------AHL20(2) -----TOE1(3)      <---------ARR11(3) --------->YAB1    <-----------------AG       <---------AHL20(2) -----TOE2(3)    ----------->ARR10<---------RVE1(1)    <-----------GT1             --------->AHL20(2)   ggttttagtaatttgggataagatattgacagagagatatttataaattatctggtttcactattttggtaggaaaactccaaaattaaatccataaccc  12781800                                                                         ------->GAMYB                                                                 <-------MYC2                                                                 ------->MYC3                                                                 -------->ABF1                                                                 ------->MYC2                                                                 <-------MYC3                                                                 ------->PIF5                                                                 ------->MYC4                             --------->ANAC55(1)                 <-------MYC4                            <-------MYC3                         <-------PIF5                            ------->MYC3                        <---------TGA1a                            ------->MYC2                        =================MYC_MYB                            <-------MYC2                        --------->TGA1a                            <-------MYC4          <---------MYB52(1)  ----------->RAV1(1)                         <---------ALFIN1        <-------GAMYB  =====================================                        <---------At4g35610      =========================MYC_MYB                        <------NtERF2       ----------->HVH21   --------->ANAC46  --------->YAB1                   --------->ANAC58  ------------>CBF           <---------ANAC55(2)     <---------ARR11(3)     <---------ARR11(3) <---------ZAT2    <---------ICU4        --------->ANAC55(2)     --------->ARR11(3)     --------->ARR11(3)--------->ANAC58   --------->YAB1        <---------O2     <---------YAB1    <---------GLK1(1)  --------->ANAC58  <---------ATHB12       --------->O2  --------->ICU4 --->TOE2(3)       --------->ANAC58 --------->ANAC58      --------->At5g28300 ------>ZmHOX2a(1) --->TOE1(3)       --------->ANAC46 --------->ANAC58     ----------->GT1--------->MYB46(3) <---------   taatcgatatctctcttggacaggccagcacatgtaacgagcaatcgtgaccgttgagacagtaacacgtggcaacagtccttatgatgagacctttgat  12781900                          <----------DOF2        <---------ATERF1(1)     --------->At4g35610  <---------DAG2     <---------At4g35610  *TSS     --------->ZAT2--------->HSFB2a(2) --------->GLK1(2) <---------HSFB2a(2)             --------->ARR14(2)                --------->YAB1 =bZIP_DOF--------->RAP2.6(2)                      <---------ARR14(2)<---------ATHB12<---------ICU4 -DOF2  --------->At4g35610         ------>ZmHOX2a(1)               --------->ANAC46<---------ATHB12   gagaatcagcagcctccatttctgtaagctttttgttcctcccaaaattcccaaatccatcttcttctccaaacaatcttctctcaaacattactactat  12782000                                                                                  ----------->RAV1(2)                                                                              ------>ZmHOX2a(2)                                                                             <---------GLK1(1)                 --------->ZAT2                                              --------->GLK1(1)                 <---------ZAT2                                              <------ZmHOX2a(2)                 --------->At4g35610                                        --------->ARR11(3)             --------->ANAC46                                               <---------AGP1             --------->ANAC58                                               --------->ARR14(2)             --------->ANAC58                                               <---------ARR14(2)     --          <---------SPL7                                                    ------->TEIL          ---         <---------ANAC58                                                --------->ANAC58        <---         <---------ANAC58                                                --------->ANAC46        ----        <---------At4g35610                                              --------->ANAC58       -----        --------->At4g35610                                             <---------LBD16  <----------DOF2    <------ZmHOX2a(1)                                       ----------------------->TaNAC69(2)  <----  --------->LBD16<---------At4g35610                        <----------DOF2 <-----------ARR10  <----- <---------LBD16------->TEIL                              ------>ZmHOX2a(1)<---------CCA1(2)--------- --------->HSFB2a(2)                 <----------DOF2      ==========================HOX2a_HOX2a<----- <---------HSFB2a(2)           --------->ARR14(2)         ===========================HOX2a_HOX2a<----   tttccaggatagcttacgcagcttcagactcgggttcttcttttcgatctagcctccgtcctctttcttcttaccacggatctcgcctgctctttttccg  12782100 --------->HVH21 ------>SPL7 ------SPL1(1) ----->SPL1(1)                   <---------O2 ---->LBD16                      <---------bZIP60(2) -----SPL7<----------DOF2  ----------->TGA1 ----ANAC58                ----------->HVH21               <---------ANAC46 --------->SPL14         --------->At4g35610       ------------>AtMYB77 ----ANAC58 <---------ANAC46  <---------ETT(2)  --------->TOE1(3) -----SPL1(2)            <---------At4g35610    --------->TOE2(3)              <---------ICU4  <-----   tacgacggtctgctttgtggatagtttggctgacgacgaggcgatttgaacattaacagttactggtacttggagtttcaaacatttctccgatgttttg  12782200                         --------->ATHB12                        --------->AHL20(2)                        <---------AHL20(2)                       <---------WOX13(1)                     ----------->GT1                     --------->YAB1                     --------->ATHB12                    <---------YAB1                    --------->ICU4               --------->LBD16     <---------WOX13(1)              <---------O2        <---------ANAC58              --------->ANAC55(2) <---------ANAC58                      --------->GLK1(2)              <---------ANAC55(2)--------->ATHB12              <---------ANAC55(2)              <---------ANAC46 <---------WOX13(1)              --------->ANAC58              --------->O2   --------->ATHB12                  <---------O2          <-----------HVH21<---------WOX13(1)                  --------->ANAC58 ----AtMYB61 <---------LBD16<---------AHL20(2)            ----------->HVH21                 <-------TEIL   gttttggcatttagtcacgggaatgattaattgattgattgctgtagaaatatgtgaagaatgacacgtagaagaatttgatgaaaccttgggatgcata  12782300                             ------>ZmHOX2a(2)                            <---------GLK1(1)                           <---------AGP1                           --------->ARR11(3)                           --------->ARR14(2)                           <---------ARR14(2)                          <---------CCA1(2)                <------MYB83--------->GLK1(1)                ----------->GT1                <------MYB46(1)               <---------MYB46(3)        <---------ANAC58                                     <------               <---------AtMYB61         <---------ANAC58<---------ANAC46                 --------->MYB59              <---------WOX13(1)      <-----------RAV1(1)<---------ANAC58                 <---------TOE2(3)            --------->ATHB12<------ZmHOX2a(2)            <---------ANAC58                 <---------TOE1(3)          <---------TOE2(3)<---------ARR11(3)   --------->ANAC46                   <---------AtMYB61<   ggcttctgtattatggattggtgattttagatctccatttatgtcgtttcacatcagtgtcttgtggttttagctatatgctgttttggttttaggttga  12782400  Previous    Next  AGI:  At4g24790.1    Description:  ATP binding / DNA binding / DNA-directed DNA polymerase. similar to DNA polymerase-related [Arabidopsis thaliana] (TAIR:AT1G14460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64194.1); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959); contains InterPro domain DNA polymerase III, subunits gamma and tau; (InterPro:IPR012763) Range:  from: 12777568    to: 12781698    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g24800.1    Description:  MA3 domain-containing protein. similar to MA3 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G63190.2); similar to MA3 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G63190.1); similar to MA3 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G48390.1); similar to H0525D09.11 [Oryza sativa (indica cultivar-group)] (GB:CAH66971.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64189.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76898.1); contains InterPro domain Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891) Range:  from: 12781926    to: 12785207    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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