Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        ====================RAV                                ---------->DOF2                          --------->ANAC58                          --------->ANAC58                       --------->At1g77200                       ----------->HVH21                       --------->DEAR3(1)                       ------->GAMYB  ----------->RAV1(2)                      <------------AtMYB77    ----------->RAV1(1)                      <---------MYB55(2)     --------->MYB46(3)   ------>MYB83       --------->MYB46(3)     --------->REM1(1)                                      <   ------>MYB46(1)    <---------MYB52(2)   ----------->RAV1(1)                                     -- <---------MYB46(2)   --------->DEAR3(2)------>ZmHOX2a(1)                                          -- <---------MYB59 ------>ZmHOX2a(1)    =================RAV        <----------DOF2      <----------DOF2   taacctaacttccttcttcctgcaaccgacgcattaatgctcctgcaacaacacaaacacattgcaaacttttgttagaaaaacagagacttttcaaaat  12771900                                                                                                   --           ---------->DOF2                                   --------->ARR11(3)                   <-- =====================================================MADS_MADS            --------->ZAT14     ------ ----------------->AGL3           --------->ZAT14     --------->DAG2   --------->ZAT6        -------- ----------------->AGL1       --------->ZAT6        ---------->DOF2  <-----------GT1    <---------ANAC46 -----------------AGL1 <----------DOF2<---------------AGL15  <---------ARR11(3)====================== ------->PCF5       <---------ARR11(3)=============================================================== ------->PCF2--------->DAG2 <-----------GT1    <---------ANAC46 <----------DOF2<---------------AGL15<   ggtcccatttttgtaaaggcgagaactttgtaacactatgctcaaattggtttgtaaaggtgagaactttgtaacactatgctcaaattggtttgtaaag  12772000                                        --------->DAG2                                       ---------->DOF2                                  --------------->AGL15                                  <---------------AGL15                                  --------->TOE2(3)                                 ----------------->AGL2                                 ----------------->AGL1                                 ----------------->AG     <----------DOF2             ----------------->AGL3 ---->NtERF2--------->ZAT6       <-----------------AGL2 --------ID1--------->ANAC58  --------->GLK1(1)                 <------MYB83 --->DAG2   --------->ANAC58  <---------GLK1(1)                 <------MYB46(1)                    -- -->DOF2  <-----------GT1   <---------ANAC58        ---------->DOF2    --------->ANAC58        <----- =================================================MADS_MADS   --------->ALFIN1                ------- ==================================================MADS_MADS<---------O2 --------->AHL20(2)  <------- ------NtERF2               <---------ANAC58       <---------AHL20(2)  --------->ANAC58      <-------   gcgacaactttgtaacgctaggctcaaattgggtttccataaaaagcagaaatttaaaggagaagtgggtttcaagtaaatgtgaaggaagggttaagga  12772100                                                     --------->ARR14(2)                                               <-----------HVH21                                          <-------TEIL                                         --------->GLK1(2)                                        <---------GLK1(2)                                        --------->ARR14(2)                                   ==========================RAV -------->DOF2                     ------->GAMYB <-----------RAV1(2) -ZmHOX2a(1)                       ----------->RAV1(1)           --------->CCA1(2) ---->GT1             <---------ZAT18   <---------ARR14(2)   <---------------------WRI1 --TOE1(3)   --------->YAB1       --------->MYB46(3) <---------ARR14(2)                        <<<<<< --TOE2(3)  <-------TEIL          --------->ANAC46  <------ZmHOX2a(1)<<<<<<<<<<<<<<<<<LFY---------->DOF2   aaaaagatgaaagattcatacttgtgaacttcttcaacgacagattcagggtcaggaactggtgaagataagaacaatggagcatagagaagaaaggaga  12772200           --------->ARR11(3)           <---------ARR11(3)                                  <---------ZAT14       ---------->DOF2                                         --------->ZAT14   <---------YAB1                                            <---------ZAT14 --------->YAB1                                              --------->ZAT14   <---------ARR14(2) ----------->GT1                                           --------->ZAT6  <---------LBD16 <<<<<<<<<<<LFY               <---------YAB1               --------------->AtSPL3   caatggtgataaagagcttcttcgtctgcattttcatttctctctctctctcacttggattacagtactgtctctctctcggattgtggtgagagaagag  12772300                                 ----------->GT1                                --------->ALFIN1                              <---------ANAC58                                  --------->DAG2                              <---------ANAC58                                 ---------->DOF2                              <---------ANAC46                         ---------->DOF2                             --------->ATHB12                         <---------AHL20(2)                       --------->ANAC55(2)                          <---------------AGL15                       <---------ANAC55(2)         <------ZmHOX2a(1)----------->TBP       --------->ZAT14                     --------->ICU4        *TSS   ----------->GT1 <-----------TBP  <------ZmHOX2a(1)<                 <------ZmHOX2a(1)    <---------ARR14(2)   <---------LBD16 <----------ID1 <---------ZAT14   ggaagcgaaggaagacagaggaaataagtattgagtggagaatacagagaagaggaaattttgggggtttatataaagagaaaaaggacctctatactat  12772400                                                                                -------->HAHB4                              <---------DAG2                                    --------->YAB1                              <----------DOF2                                   <---------ICU4                           <---------ALFIN1          ----------->GT1          <---------AHL20(2)<----               <---------TOE2(3)                  <----------DOF2            --------->YAB1    <-----         --------->ICU4 --------->PCF2          <---------YAB1              <---------YAB1     <-----  <------------CBF      <---------TCP15(1)    --------->YAB1       --------->TOE2(3)          ------- --------->ATHB12    --------->MYB59     <---------AHL20(2)        --------->TOE1(3)     <------ZmHOX2a(1) ---------YAB1 <---------TOE1(3)         --------->AHL20(2)     <-----------GT1--------->ICU4<-------   ttgttattggaatttttaaggtttaggtcccacttttttttttttaaatcatctttagttaaaaaaaaaccttatactataataatgcctaggaggtagg  12772500                                                                                           <---------DAG2                                                                                       <---------ZAT14                                                                                       --------->ZAT18                    <---------MYB52(1)                                               --------------->AtSPL8        <---------TOE2(3)                                                            <---------------AtSPL8 --ZmHOX2a(1)       <<<<<<<<<MYB98                                              <---------ARR14(2) -MYB46(1)   ----------->ARR10                                                  --------->ARR14(2) -MYB83 <---------YAB1                                  ---------->DOF2    <------MYB46(1) <--------- -->MYB59----------->GT1       <---------YAB1        --------->AHL20(2)    <------MYB83<---------ZAT18 -P --------->AHL20(2)     <---------CCA1(2)     --------->AHL20(2)       --------->MYB59------->TEIL   aacaaataatatggttacatccgttactcaaatctaattgttgacaaaaaactaaataaaaagcctccaatctaattaggtcgatatggtgtacttttca  12772600                                                                                 --------------->AGL15                                                                                 <---------------AGL15                                                     <------MYB83               ----------------->AGL2                                                     XXXXXXXXXXXXXXXXXXXX>MIR869.2                                                     <------MYB46(1)            ----------------->AGL1                                                    <---------AtMYB61           ----------------->AGL3                                             --------->LBD16                    ------>ZmHOX2a(2)                                             <---------LBD16                  <---------ARR14(2)                                            <---------LBD16                   --------->ARR14(2)                                            <-----------RAV1(2)              <------ZmHOX2a(1)                                          --------->CCA1(2)                <---------TOE2(3)  <------                                          <------ZmHOX2a(2)          <---------ANAC55(2)     --------                                         --------->ARR11(3)         --------->MYB59        <---------                                         --------->ARR14(2)     --------->MYB46(2)       <---------MYB52(2)                                         --------->AGP1<---------ZAT6<---------ANAC46   --------->ANAC55(2)                                         <---------ARR14(2)     --------->MYB59<------ZmHOX2a(2) ----                                <-------TEIL--------->TOE1(2) <---------MYB52(1)<-------TEIL --------          ----------->HVH21    <-----------GT1      <---------MYB46(3) --------->YAB1   --------->ANAC58        --------->O2        <---------ARR11(3)     <--------P------------>MYB.PH3(2)    --------->ANAC58 -DOF2  --------->ANAC46    <---------AHL20(1)    <-------GAMYB --------->MYB52(2)      <---------ANAC55(2)   aataacttccacatgacctgtttagcccaatatatacattatagatccagggagttggtgttaagttagttaagtataaggatccatatcaagtaaccat  12772700                                --------->YAB1                             ------->TEIL                        <---------ANAC46                        <---------AtLEC2                  <---------AHL20(2)                 --------->AHL20(1)  ----------->GT1<---------AHL20(1)                                                <------NtERF2 ---ICU4       --------->AHL20(1)                                               --------->RAP2.6(3) ->MYB46(3)    <---------AHL20(1) <---------AHL20(2)                        --------->ZAT14 --GT1   --------->YAB1 <---------ANAC58       <---------TOE2(3)            <---------ZAT14 ----->AHL20(2)<---------ARR11(3) <---------YAB1                            ---------->DOF2 ->ICU4  <-----------GT1<---------ANAC58    <---------AHL20(2)           ----------->GT1    ---------   tatatagtttataacaatatatatttgcatgtatttataattgtatattaatgtgtattttcatacattttagaacagtaaagtcggcattgagaaaagt  12772800  Previous    Next  AGI:  At4g24780.1    Description:  pectate lyase family protein. Identical to Probable pectate lyase 18 precursor [Arabidopsis Thaliana] (GB:Q9C5M8;GB:O23667;GB:Q8LAW7;GB:Q9SB71); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G63180.1); similar to pectate lyase [Prunus persica] (GB:BAF43572.1); similar to pectate lyase [Malus x domestica] (GB:AAQ84042.1); similar to Pectate lyase [Prunus mume] (GB:BAE48664.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectate lyase/Amb allergen (InterPro:IPR002022); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 12770341    to: 12772343    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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