Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  --------->ATHB12                                                               <---------YAB1                                                            <---------AHL20(2)                                                            --------->AHL20(2)                                                         <---------AHL20(2)     <----------DOF2                                                         <---------AHL20(1)<---------ZAT2          <-                                                       <---------YAB1  <------ZmHOX2a(2)  --------->ZAT6              --------->DDF1                 --------->ARR11(3)<---------AHL20(2)        <---------YAB1     <------ZmHOX2a(2)                  --------->AHL20(2)<---------YAB1   <---------At4g35610-------   gttatggatcaaacatgtcgatctataaatgtcaaaaacaaaaaaaataacttggctattatttttttattggatcaagctgctataacttatgactagt  12720000                                                                                                 <---                                                                                               <-----                                      <<<<<<<<<GATA-1                                         <------        <-----------GT1              <-----------GT1                                        <--------   --------->AHL20(2)             <---------AHL20(2)                                        ---------   <---------AHL20(2)           <---------YAB1                                           --------->ICU4 --------YAB1                 <---------AHL20(2)                      <----------DOF2 <------ZmHOX2a(1) ---->GT1<<<<<<<<<GATA-1      --------->AHL20(2)             ------->TEIL      --------->YAB1 <------   tataaatatttatctatacaagactagaatatttatttttatctatgtattgttgaatgaatgaacttctgtcttttaaaatcatataggagttattatt  12720100                                              ----------->GT1                                              --------->YAB1      --------->ANAC58       <---------ARR11(3)                                   <---------YAB1 ------AHL20(2)          ---------->DOF2     ----------->GT1                     <---------TOE2(3) ----YAB1         <---------ATHB12           <---------YAB1          --------->RVE1(1) ---AHL20(2)     ------>MYB46(1)         <---------AHL20(2)         --------->GLK1(2) -YAB1--------->ANAC58 --------->YAB1   --------->AHL20(2)          <---------ARR11(3) >ICU4----------->GT1  --------->AHL20(2)--------->AHL20(2)         --------->ARR11(3)            --- ---AHL20(1)     ------>MYB83--------->ARR11(3) <---------YAB1     <---------GLK1(2)          <------   tttttggcaagtaaacacctatcaataaaaagacatttcaaattaaaatgataaatatgtttttagacaaaatctcttatatttatgtttatttctatgt  12720200                                      <---------ARR11(3)                   <---------YAB1                                      --------->ARR14(2)     <---------RVE1(1)                     --------------->AGL15        --------->TOE2(3)      <---------ICU4                     <---------YAB1  --------->RVE1(1)       <---------CCA1(1)                     --                     <---------------AGL15       ----------->GT1         --------->YAB1            --              <-----------GT1        --------->CCA1(1)      <---------ARR11(3)                  <----      --------->AHL20(2)<---------YAB1--------->ARR11(3)    --------->ARR11(3)             <---------TOE2(3) -------->GT1 <---------AHL20(2) --------->AHL20(2)   <---------YAB1    --------->ICU4    --------->MYB52(1) ---YAB1   <---------ICU4       XXXXXXXXXXXXXXXXXXXX>MIR861-3P   <-----------GT1        <---------MYB52(2)   ttgtaaaattgaatatttacattcttattttagataaaaatatcttcaaaaatgttaatatagatatttacaaaataatgaatgaacaaaactaacgaat  12720300                      --------->YAB1             <----------DOF2      --------->TOE2(3)                       <---------TOE1(3)      <----------DOF2<---------YAB1          <-----------GT1                               ------->TEIL ------->ANAC58    --------->YAB1         --------->YAB1                            <---------AHL20(2) ------->ANAC58 ----------->GT1      ------------>CBF        --------->YAB1       <-----------TBP -----ATHB12    <---------ZAT6  --------->ANAC55(2)   <----------DOF2      ------>ZmHOX2a(1)  <------   caagaaaactttaatatagagttataatagacttatgtgatcaattttaagctttcctttcattcataaacacattcctacagtatatatatgtatgcat  12720400                                              <---------ANAC58                    <---------YAB1         --------->KAN4(2)              --------->ARR11(3)         --------->ARR14(2)              <---------ARR11(3)         <---------ARR14(2)     --------->TOE2(3)                <---------ANAC46              --------->ANAC46    --------->MYB46(3)            <---------ANAC58         --------->TOE2(3)                        <    *TSS     --------->YAB1       <---------ANAC58         --------->YAB1   <---------ANAC46     <--- ---AtLEC2  <---------YAB1 ----------->RAV1(1)<---------ANAC58    <-----------GT1   --------->YAB1  -   ggggtaaccaaaatatgatattagcatagcaacattgtttgtgtatattcgtgtttctcaatctcaatttacgacatgaagtgtaatgacaaaatggttg  12720500            <------NtERF2            <-----------------AGL1           --------->MYB52(1)          <---------ALFIN1         --------->ATERF1(1)         <---------ABI4(2)         <------NtERF2         ----------->HVH21        <---------ATERF1(1)       --------->PCF2     <---------ANAC58     <---------ANAC58   --------->ANAC58         <----------DOF2 <---------ICU4    <---------HSFB2a(2)           <---------DAG2      <------ZmHOX2a(2) --------->ATHB12  --------->HSFB2a(2)      ------>ZmHOX2a(2)       --------->ARR11(3)      --------- ---------YAB1  <---------ARR14(2)    <-------GAMYB                 <---------ARR11(3)      <-------- ------YAB1------>NtERF2--------->ANAC58  --------->ARR11(3)      ----------->ARR10  ---------->DOF2 -------->ICU4  --------->ARR14(2)   <-----------RAV1(1)   ---------->DOF2     ----------->HVH21   tgatcatgggtgccaccggttctggcaagtcatcactctctgttgatctcgctttacattttaaagccgagatcatcaactctgacaaaatgcagttcta  12720600                                                       --------->ANAC46                                                       --------->REM1(1)                                                       --------->TGA1a                                                     <---------ALFIN1                                                     ----------->RAV1(1)                                                <---------ANAC46                                                <---------ANAC58                                                <---------ANAC58                                             --------->ALFIN1                                           <---------bZIP60(2)                                           --------->TGA1a                                           <---------O2--------->O2                 --------->ANAC58          <---------ANAC46                 --------->ANAC58          ======================bZIP_bZIP                 --------->ANAC46          <---------TGA1a            --------->ZAT14           <------ZmHOX2a(2)           <------ZmHOX2a(2)              <---------ZAT14   <---------ANAC46                   --------->ARR11(3)              <---------ZAT18               -   <---------ANAC58    --------->WOX13(1)  --------->O2--------->bZIP60(2)       --------->LBD16    <   <---------ANAC58  <---------ATHB12 <---------ARR14(2)         <---------HSFB2a(2)             <--- >ARR14(2)--------->ARR11(3)          <---------ARR11(3)         --------->HSFB2a(2)           ------ -ARR14(2)<---------ARR11(3)          --------->ARR14(2)     <---------DAG2    <---------LBD16<------   cgatggcttgaagatcaccacgaatcaatcgaccattgaagatcgacgtggagtgccacatcaccttctcggtgaactaaacccggaggctggagaagtc  12720700                             --------->ANAC58                        <---------At4g35610                        ----------->RAV1(2)                        <-------GAMYB                        --------->At4g35610                       <---------MYB46(3)                       ------>NtERF2                       <---------ERF1                       <---------RAP2.3(1)                                       <------ZmHOX2a(2)                      <---------RRTF1(2)                                        <---------ARR14(2)                      <---------ANAC46                                          --------->ARR14(2)                      <---------RRTF1(3)                                      <---------MYB46(3)                      <---------ANAC58                                       --------->ALFIN1                      --------->ATERF1(2)                                   <---------MYB52(1)                      <---------DREB2C(2)                                  --------->LBD16                      <---------RAP2.3(3)                                 --------->ATERF1(2)       <---------GLK1(2)<------NtERF2                                     <---------DREB2C(2)   --------->At4g35610<---------RAP2.6(2)                                 <---------DEAR3(1)   <------NtERF2      <---------ANAC58                               <---------ANAC58  ----------->RAV1(1) <---------RAP2.3(2)                  --------->At4g35610--------->ABI4(2) -------->At4g35610   <---------ATERF1(2)           --------->TOE2(3)<---------ANAC58 ---------At4g35610   <---------DEAR3(1)           --------->ANAC46 <---------ICU4------>ZmHOX2a(2) ------At5g28300     --------->RAP2.6(3)           ----------->GT1--------->ARR14(2) ----->HVH21   <----------DOF2         --------->LBD16  ---------->DOF2   <---------ATERF1(2)   ----- -----HVH21 <---------ANAC46 --------->ANAC58    --------->MYB52(1)<---------ATHB12            <-----   acagcggcagaatttcgcgttatggcggctgaagccatctccgagattactcaacgtaaaaagctcccaatccttgccggtggatccaactcatacattc  12720800                                                                                   <---------MYB46(3)                                                                                 >>>>>>>>>ARR1                                                                                 >>>>>>>>>ARR2                   ----------->HVH21                                            --------->ATHB12             --------->GLK1(2)                                                 <---------YAB1             --------->ARR11(3)                                         ----------->GT1 ---->YAB1   <---------ARR11(3)       <---------MYB52(1)       --------->At4g35610<---------WOX13(1) --TEIL--------->AtLEC2  --------->LBD16                       <---------At4g35610<---------YAB1   atgctctccttgcaaaatcttatgaccctgaaaactatccgttttctgatcacaagggctcaatctgctccgagttgaaatatgattgttgtttcatttg  12720900  Previous    Next  AGI:  At4g24650.1    Description:  ATIPT4 (Arabidopsis thaliana isopentenyltransferase 4). similar to ATIPT1 (ISOPENTENYLTRANSFERASE 1), adenylate dimethylallyltransferase [Arabidopsis thaliana] (TAIR:AT1G68460.1); similar to isopentenyltransferase [Brassica rapa subsp. pekinensis] (GB:BAE43826.1); contains InterPro domain tRNA isopentenyltransferase; (InterPro:IPR002627); contains InterPro domain Isopentenyl transferase-like; (InterPro:IPR011593) Range:  from: 12720404    to: 12721453    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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