Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     ----------->HVH21                                   --------->DEAR3(1)                                   --------->MYB46(3)                                  --------->At4g35610                                  --------->ATERF1(1)                                  <---------At4g35610                                           =====                                  <------NtERF2                          ----------->GT1        <----                                 <---------ATERF1(1)                  ---------->DOF2         -------                                <---------DEAR3(1)                  <------ZmHOX2a(2)         -------                          <----------DOF2                ---------->DOF2<---------TOE2(3) --------->AtMYB61 -------->YAB1     ------>ZmHOX2a(1)             ----------->HVH21  =================================   aataagaagtcttctaatctcctcccttctttgggcagcgaccctccatttgtgacgaacaaagagaccgatcaaaggtaaaacaagagagaccacaagg  12684500                                                                                     --------->TOE2(3)                                                                                     --------->YAB1                                                                                    --------->MYB46(3)                                                                                    <---------ATHB12                                                                                   ------>MYB83  ----                                                                                   ------>MYB46(1)                                                                                   -------->P   <----                                                                                  --------->MYB55(1)                  ==============================HOX2a_HOX2a                      <---------MYB46(2)                  <------ZmHOX2a(2)                                              --------->DEAR3(1)        <---------GLK1(1)                               --------->ANAC58         --------->AtMYB61---        --------->GLK1(1)                          <-------TEIL                  --------->MYB46(3) ========================HOX2a_HOX2a            --------->At4g35610              <---------MYB111(2) --ZmHOX2a(1)    <---------ARR14(2)         ----------->RAV1(1)      <---------AHL20(2)       <------ -->ANAC58       <---------ARR11(3)        <---------ALFIN1         --------->AHL20(2)     <---------GLK1(1) -->ANAC58       --------->ARR14(2)      ------>ZmHOX2a(1)     ----------->GT1   <---------MYB111(1) ==HOX2a_HOX2a   --------->AGP1         --------->ANAC46--------->ANAC58         <---------MYB55(2)   actagactagaaatccctagatccaaaacaaggagcatttatcctccaccagatgcacaaacaattggaaataaatctgagcaccaaccatagatttcac  12684600                                                      --------->AtLEC2                                                     <-------PIF5                                                     <-------MYC3                                                     <-------MYC2          --------->LBD16               --------->LBD16        <---------LBD16                <---------DEAR3(1)    ---------->DOF2                   --------->SPL7 ------->MYC2   <---------KAN4(2)             <------ZmHOX2a(2)   ------->PIF5 ----->DEAR3(1)                 <---------ARR14(2)   <-------MYC4 -----LBD16<------NtERF2        --------->ARR14(2)   ------->MYC3                 <------ZmHOX2a(1) ------>LBD16        ----------->HVH21<---------LBD16<-------PIF4           --------->ANAC58 -----GT1<---------LBD16       <------ZmHOX2a(1)     ------->PIF4           --------->ANAC58      <--   cggcgaataagccgggaacagaggtgacagtgaggatcagtccggcgatttagcacatgcagagagagcgagagagagaagccaggaatcgatggaagtt  12684700                    <---------At4g35610                    --------->At4g35610                    --------->HSFC1(2)                    <---------HSFC1(2)               <------MYB83               <------MYB46(1)              <---------MYB46(3)              --------->MYB55(2)             <---------MYB55(1)             <---------ANAC46             <--------P           <---------MYB46(3)                                                               <------MYB46(1)           --------->ZAT2      <---------ICU4                                               <------MYB83           <---------ZAT2--------->HSFB2a(2)                                                <--------  <---------AHL20(2)--------->HSFB2a(1) --------->ANAC58                                   --------->MYB59  <---------ICU4 <--------P    --------->YAB1    ---------->DOF2                  <---------ZAT14  --------->AHL20(2)<---------HSFB2a(1) --------->ANAC58    ----------->GT1       --------->ZAT18 -------YAB1<---------MYB52(1)--------->ICU4 --------->GLK1(2)   ---------->DOF2  <---------ZAT18   ataattttttcgctggtgggtaagcttccaaaatgatgacccaagaaaatccaaagatgagaaggaataaagaaaaccctagagagcacaagttgggttt  12684800                                          <----------DOF2                           --------->GLK1(2)                           --------->ARR11(3)                           --------->ARR14(2)                    ----------->GT1<---------ANAC58                         --------->GLK1(2)                --------->DAG2     <---------ANAC58   ---------->DOF2    ----------->ARR10               ---------->DOF2<-----------RAV1(1)   ----------------->AGL1 <---------GLK1(2)        -          --------->LBD16  <---------ARR14(2) <---------TOE1(3)      <---------ZAT14      <------ZmHOX2a(1) -ANAC46<---------LBD16   --------->RVE1(1)   <---------TOE2(3)     --------->ALFIN1     <----------ID1   tctattgttctctgggaaaaagttgaaaaaatctggtgcttctggtttagggtttcgaaagagggcaagagtggagagattcttcggtagaaggacgaag  12684900                   <----------DOF2                   <---------DAG2            <---------ARR11(3)                   *TSS                                               <            --------->AHL20(1)            <----------DOF2                                 --------->TOE2(3)         ----------->GT1                  <---------DAG2                                  <----------       <------NtERF2                     <---------ANAC58            <----------DOF2     --------->bZIP60(1)    <------ZmHOX2a(1)                    <---------ANAC58           --------->TOE2(3)    <---------bZIP60(1) -------->ICU4  <-----------GT1      <----------DOF2<-----------GT1 <---------DAG2  <----------DOF2 -   aaattaggaggcagtatattacttttctataccaagacgctttgctttttcattttaccagaccagacaacctttttttttttttgctctaacgtcattt  12685000              <-----------GT1                                                            --------->YAB1          <---------YAB1                                     --------->ANAC46           <---------YAB1          <---------AHL20(2)                                <---------LBD16             <---------ATHB12   --------->YAB1   ---------->DOF2                       <---------WRKY12   <---------AtLEC2 ---------GLK1(1)   <------ZmHOX2a(1)              --------->YAB1       ------->TEIL    --------->ICU4 -TGA1   <---------AHL20(2)   <----------DOF2   --------->YAB1------->GAMYB  <---------ANAC58  ------ -------->GLK1(1)<---------LBD16             --------->YAB1--------->MYB52(1)<---------ANAC58 -------   ggaaatcatatttttattaccaggaagcccttcttttaaaaacaaaataagaataatagttcaacggaaatatgaatttgcatgttgacaatgataaaaa  12685100                                                   --------->DAG2                                              --------->AHL20(2)                   --------->DAG2             --------->YAB1                                       <-              --------->AHL20(2)           --------->WOX13(1)          <---------REM1(1)     ------->TEIL <---------YAB1   ---------->DOF2<---------ANAC55(2)         --------->ATHB12       --------->YAB1 <- --->DAG2     --------->YAB1     --------->ANAC55(2)        <---------YAB1          --------->AHL20(2) --->DOF2  --------->WOX13(1)   --------->MYB59   ---------->DOF2  --------->ARR11(3)<---------AHL20(2)   gttatgaattagtcaattaaaaaagtgtgtaagttatgtattagtcaattaaaaaagtgtgtatgatgggatattgtagctatctattatatatgtatat  12685200             <-----------HVH21              <-----------GT1                                      <---          <---------ANAC58                <----------DOF2                                 <---------AHL20(2)          <---------ANAC58             <-----------GT1     <----------DOF2            <---------AHL20(2)          <---------ANAC46      --------->AHL20(2)------->MYC3                      <---------AHL20(2)  <---------ZAT18--------->ANAC58     <<<<<<<<<<GT-3b      <---------DAG2--------->DAG2<---------AHL20(1) --------ANAC58  --------->ANAC46 <---------AHL20(2)    <-----------GT1 ---------->DOF2--------->AHL20(1) --------ANAC58  --------->ANAC58<---------YAB1   <-------MYC3       <---------YAB1 --------->AHL20(2)   ttagtgccattttcgtgtcacaccatgtcttcatttttatttttctttaccatgtgttatacttttttgttataaaaagttgatatatatatattatcgc  12685300                                                                                             <-------                                                                                            ---------                                                                                        --------->AHL20(1)                                                                                        --------->AHL20(2)                                                                                        <---------AHL20(2)                                                                                   <---------AHL20(2)                                                                                   --------->AHL20(1)          <---------ANAC55(2)                                                      --------->AHL20(2)          --------->ANAC55(2)                                                   --------->YAB1  <----------DOF2             --------->YAB1                                  <---------AHL20(2)  <---------DAG2    <---------AHL20(2)                                        --------->AHL20(2) -------DOF2       --------->AHL20(2)  --------->MYB46(3) <-----------GT1   <---------AHL20(2)     <-   ttaactttttttaagtaactataaaatgggtatcatatataacaaacatatataagtattttgcaatttatgcgatatataaaaataaaataaaataaat  12685400  Previous    Next  AGI:  At4g24560.1    Description:  UBP16 (UBIQUITIN-SPECIFIC PROTEASE 16); ubiquitin-specific protease. Identical to Ubiquitin carboxyl-terminal hydrolase 16 (UBP16) [Arabidopsis Thaliana] (GB:Q9SB51;GB:Q9FPS8); similar to ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein [Arabidopsis thaliana] (TAIR:AT5G65450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61616.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394); contains InterPro domain Zinc finger, MYND-type; (InterPro:IPR002893) Range:  from: 12679220    to: 12684949    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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