Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               --------->GLK1(1)                                                             <---------GLK1(1)                                                             <------ZmHOX2a(2)                                                             ==============HOX2a_HOX2a                                                            --------->ARR11(3)                                                            <---------ARR11(3)                                                            --------->AGP1                                   <-----------ARR10        <-----------ARR10                                   <---------ARR11(3)       <---------AGP1                                  <---------CCA1(2)         --------->ARR14(2)                                 ====================================HOX2a_HOX2a                                 ===================================HOX2a_HOX2a              <-------                                 ------>ZmHOX2a(1)          <---------ARR14(2)               --------         <---------MYB52(1)     --------->TOE1(3)          <---------CCA1(2)               XXXXXXXXXX ------ANAC58                 <---------YAB1  --------->ANAC58      ------>ZmHOX2a(1)<---------ARR14(2) ------ANAC58      --------->WOX13(1)         --------->ANAC58=============HOX2a_HOX2a<---------At4g35610 ------GT1       <---------YAB1 --------->TOE2(3)     <-----------GT1                ------->TEIL --- -->GT1<----------DOF2    <----------DOF2     --------->ANAC46------>ZmHOX2a(2)      --------->ARR14(2)   cttgtctcgctgttatgttatcaatcttctttatccttatcttctctctcgccattttaccagatctctccttcactactgttcttgaatctgcctatac  12673700                                                                           <---------AHL20(2)             <---------ARR11(3)                                           --------->AHL20(2)---------   --------->ZAT6                                                  ----------->GT1       <---------GLK1(1) --ARR14(2)  --------->ARR11(3)                              ---------->DOF2--------->YAB1  --------- ->ARR14(2)<---------TOE2(3)                              --------->At4g35610          <------ZmHOX2a(1) XXXXXXXXXX>MIR4240              ---------->DOF2          <---------At4g35610<---------AHL20(2)------ ------>ANAC46               ---------->DOF2         --------->ALFIN1  --------->AHL20(2)--------->GLK1(1)   ccataacaccatttagattttagaccaagaacaaagaaagaaaccaattggaacggtgttagctaaagagagtttatataatattcttaggaaaccctaa  12673800                            <------ZmHOX2a(2)                           <---------ARR14(2)                           --------->AGP1                           --------->ARR14(2)                                                    ----                          --------->At4g35610                                              XXXXXXXXXX >TOE1(3)              <------ZmHOX2a(2)        ---------->DOF2                         <---------ANAC58 >TOE2(3)            <---------GLK1(1)      --------->ANAC58                            <---------ANAC58 --->MYB52(1) ---------->DOF2<-------TEIL   --------->ANAC58 <------ZmHOX2a(1)      <----------DOF2   tggctagagagagagagaaagagagatcagatccataaaccatgagaagcaaaagaatggacaggactagatgaattcatcaaacactttgcttaagaag  12673900                                                                                 --------->AHL20(2)                                                      <---------MYB52(1)        --------->AHL20(2)                                                     --------->TOE2(3)          <---------AHL20(2)                                           ------>ZmHOX2a(2)               <---------DAG2                                          <------ZmHOX2a(2)                <----------DOF2                                         <-----------ARR10               ------>MYB46(1)                                         <---------ARR14(2)              ------>MYB83                                         <---------ARR14(3)           --------->ANAC58                        <----------DOF2  --------->ARR14(3)           --------->ANAC58                 <----------DOF2         --------->GLK1(2)           --------->PCF2           <-----------GT1               --------->ARR11(3)         <---------ALFIN1          <-------TEIL <---------DAG2    --------->ARR14(2)        --------->At4g35610        <---------ARR14(2)               <---------ARR11(3)        <---------At4g35610        <---------GLK1(2)                <---------AGP1            <---------ZAT2<---------AHL20(1)        --------->ARR14(2)              <------ZmHOX2a(1)          --------->ZAT2<---------AHL20(2) - ------>DOF2<---------At5g28300  <-------GAMYB      --------->ANAC55(2) <---------ALFIN1      ------- XXXXXXXXXXX>MIR2936<-----------GT1--------->ALFIN1 <---------ANAC55(2)--------->MYB46(3)    --------   aaagaacacagattcacagcttttacctttctgtgagttggaggatcttggattacgttattcaatctcagcacccactttattaaatttgtgagaagat  12674000                      <-----------GT1                <---------ZAT2                <---------At4g35610              <--------P                                                                      -------             <---------MYB52(1)                                                          ----------->GT1  <---------TOE2(3)  --------->ZAT14                                                    ----------->GT1 --------->DOF2 --------->At4g35610                                                  --------->ATHB12 ---->GT1  <---------HSFB2a(2)                  ---------->DOF2                     <---------YAB1 --->GT1   --------->HSFB2a(2)    --------->ALFIN1                                *TSS<------------CBF   aaaaaaggtttttctggtagctgtttactccctaatgtgtgagtgagagagaaagagagagagagatggtgactgtgtttgtgttcaagattggaaaaaa  12674100                                                                                                   --                                                                                                -----                                                                                               ------                                                                                              <------                                                                                            <--------HAHB4                                                                                            ---------                                                                                            ---------                        --------->ARR11(3)                                                  <--------             <---------At4g35610                                    <---------ICU4         --------->ICU4     <---------------AGL15         <---------YAB1               <---------YAB1             <---------YAB1     --------------->AGL15------>ZmHOX2a(2)                  <----------DOF2               <---------ATHB12     <----------DOF2    <---------ARR11(3)              <-----------GT1                 <---------YAB1     <---------DAG2    --------->ZAT14                 <---------CCA1(2)      <-----------GT1-------- --->DOF2    --------->At4g35610   ------------>CBF --------------->AtSPL8<----------DOF2--------->YAB1   gagtctgctttttttagctaaacagtgatctatacttatcaatgggccatatgttttgtatcccttttgattatgtctttttcccaaactataatcatta  12674200                                                                                    ------>MYB46(1)                                                                                    ------>MYB83                                                                                  <---------MYB46(2)                                                                                  <---------MYB59                                                                           <--------ATHB1                                                                           <---------AHL20(2)                                                                           --------->ATHB51                                                                           --------->AHL20(2)                                        ------>NtERF2                     --------->ICU4 ------->YAB1                          >>>>>>>>>AtERF-3                 --------->YAB1 ---->YAB1                             >>>>>>>>>AtERF-4                <---------AHL20(2) --->AHL20(2)                        <---------At4g35610              --------->AHL20(2) ---YAB1                             --------->At4g35610           --------->ATHB12 --------->MYB52(1) >YAB1                               --------->ZAT2               --------->ICU4  <---------MYB111(1) >ATHB12                             <---------ZAT2               <---------YAB1 --------->ANAC55(2) -ICU4                        ----------->HVH21                 --------->YAB1 <-----------GT1 ->TOE2(3)       <----------DOF2   <---------ZAT14      --------->At4g35610<---------ICU4        ----   aaaataacacataaacacactttgtgttttgtctgactgagctgccagacgaagagactgctacagttatgatttaataatttacctaaccttctaattc  12674300                                                           <-----------GT1                                <---------------AGL15 <---------TOE1(2)                                --------------->AGL15------>ZmHOX2a(1)                                <---------DAG2  <---------GLK1(1)                                <----------DOF2 --------->GLK1(1)                          ----------->GT1   <---------ANAC58      <-----------HVH21   --------->YAB1    <---------ANAC58                       <-----------GT1 ----->WOX13(1)--------->ICU4<-----------GT1<---------ANAC46<---------At5g28300    <-----------ARR10   aattagtctgtcatggaataatgtggaattgtaactttattcagtagcgggtttcctagttttactgttttagtctagttttgaataacttcccatctaa  12674400                  <---------ANAC58                  <---------ANAC46                  <---------bZIP60(2)                  <---------bZIP60(1)                  <---------TGA1a                  --------->TGA1a                  --------->O2                  <---------O2                  --------->bZIP60(1)                  --------->ANAC55(2)                  <---------ANAC55(1)                  ----------->GT1                  <---------ANAC58                  <---------ANAC55(2)                 ----------->STF1               ----------->TGA1               ----------->HVH21            <---------AHL20(2)                                         <---------AHL20(2)           <---------AHL20(2)                                   <-----------HVH21           ------>MYB83           --------->AHL20(2)                                   <--------ZAP1               ------>MYB46(1)         --------->YAB1                                        <------MYB83            <-----------GT1       --------->AHL20(2)                --------->AHL20(2)    <------MYB46(1)    ---------->DOF2----      --------->YAB1              --------->LBD16  <---------AHL20(2)  --------->AHL20(1)  --------->ANAC46     --------->AHL20(2)          <---------ANAC46  --------->AHL20(2)  --------->AHL20(2) --------->MYB46(3)   aaacaaaataaaaataaatgacgtgaaatactactccgtataagttaatagatttatatatggctaggtcaaataaaatgatacaaaagttacccactat  12674500                                                                       ------->TEIL                             --------->ATHB12               --------->ANAC46                    <----                             --------->ATHB51               --------->ANAC58                    <----                   --------->AHL20(2)                       --------->ANAC58         ---------->DOF2          <---------YAB1    <---------YAB1       <-----------GT1    --------->ANAC55(2)         <----      <-----------GT1     --------->YAB1         --------->YAB1     <---------ANAC55(2)         -----   ----------->GT1--------->AHL20(2)          <---------GLK1(1)    --------------->AtSPL8---------->DOF2 ----->YAB1   --------->AHL20(2)         ---------->DOF2--------->ANAC46     --------->YAB1    ------   caaaaatgtaacatgataaaataaaaaaacataattggaaaatgaaagaaatcacaatacacaaggaactacgtaccaattctaatggaaagaaagtttg  12674600  Previous    Next  AGI:  At4g24540.1    Description:  AGL24 (AGAMOUS-LIKE 24); protein binding / protein heterodimerization/ protein homodimerization/ transcription factor. similar to SVP (SHORT VEGETATIVE PHASE), transcription factor [Arabidopsis thaliana] (TAIR:AT2G22540.1); similar to MADS box transcription factor [Ipomoea batatas] (GB:AAK27151.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) Range:  from: 12670975    to: 12674082    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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