Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->MYB52(2)        <---------MYB46(3)       <--------P      <---------MYB52(1)     --------->LBD16        ------>NtERF2          <---------ANAC58    --------->HSFB2a(2)    --------->DEAR3(1)      <---------ANAC58    <---------HSFB2a(2) --------->ANAC58           <---------ANAC46   <---------LBD16      --------->ANAC58          <-------TEIL  --------->MYB52(1)    --------->ANAC46       --------->HSFB2a(1) ------->HSFC1(2)      --------->SPL7          <---------HSFB2a(1) --------HSFC1(2)    <---------SPL7       --------->HSFB2a(2) ------->HSFB2a(1)   --------->ZAT14      <---------HSFC1(1)                                       -- --------HSFB2a(1)  --------->ALFIN1--------->ATHB12                                              <-- --------ZAT2      --------------->AtSPL8 --------->HSFC1(1)                                    ----- ------->ZAT2<---------ANAC58  --------->LBD16 <---------HSFC1(2)                               ----- ------>ANAC58     <---------------AtSPL3 <---------HSFB2a(2)                                   ----- ------>ANAC58    <---------ANAC46<---------WOX13(1)                   --------->ATHB12        ------ ->ANAC46    <---------ANAC58<---------LBD16   --------->HSFC1(2)     <-------TEIL            -------   aagcttccggtagttccatgcggtgtacgcctccggattgatttctagaagcttcgtgcttaactcaatagcttcattggtataactagaaaccaaaaaa  12657900        <---------YAB1      -------->HAHB4      <---------ICU4      --------->ATHB12     <---------ATHB12                                     --------->ZAT18     --------->ICU4           ------>ZmHOX2a(1)           <---------ZAT14 <---------MYB52(2)         ------>ZmHOX2a(2)         <---------------AtSPL8 --------->MYB46(3)        <------ZmHOX2a(2)     --------->TOE1(2) --------->RAV1(1)        <---------ARR11(3)   --------->GLK1(2)--------->ARR14(2) --------ID1              <---------ARR14(2)   --------->ARR11(3) ---->ANAC58              --------->ARR11(3)   --------->ARR14(2) ------>ZmHOX2a(2)              <--- ---->ANAC58              --------->ARR14(2)   <---------ARR14(2) ======================HOX2a_HOX2a ---->ANAC46         ---------->DOF2--------------->AtSPL3<-------TEIL                  ------------- --->DAG2       --------->AHL20(2)  --------------->AtSPL8--------->ZAT14        <------ZmHOX2a(1) --->DOF2 ----------->GT1<------ZmHOX2a(1)    --------->RVE1(1) <---------ARR14(2)      <------------   gcaacaaatgattagtaaataaacaaaggatccttcaaatcgtactaaaaatctgggaagtacactgatccgatggaaatgaaggagaagattgtacatt  12658000                                                                      <-----------------AGL1                                                               <---------ZAT2                                                               --------->At4g35610                                                         --------->ZAT2                                                         ----------->RAV1(2)       --------->ATHB12                                  --------->At4g35610      --------->ICU4                    <---------ZAT2   <---------ZAT2 ------>ZmHOX2a(1)    <-------      <---------YAB1                    --------->ZAT2<---------At4g35610       <---------ANAC46 --------->YAB1                         --------->At4g35610    <---------At4g35610           <------- ------AHL20(2)                         <---------At4g35610----------->HVH21    <---------ANAC58   -- -->AtSPL8                             --------->GLK1(2) <---------At4g35610    <---------ANAC58   -- ---AtSPL8                  <---------ZAT14       <----------DOF2 --------->At4g35610        <-------   ttatcgtgatgattcgtcataaactgagactggagagagcgaagctgaacagctttagcagctgaagctgcttcctcttctggcttagaagcattccttg  12658100      --------->ZAT14      <-------TEIL      <---------ZAT18 --ANAC58                                                 ----------->GT1 --ANAC58            ------>NtERF2                        --------->LBD16 --------->HVH21  ------>NtERF2--------->CCA1(2)    <----------DOF2                    ----------->GT1 ------->ETT(2)  --------->DEAR3(1) ----------->RAV1(1) <---------LBD16         <---------YAB1 --ANAC46        ----------->HVH21 ----------->HVH21<---------DAG2              <---------ANAC55(2)--   gacgaccgtgcattcttctccgacgactgtgagagatgcgacagtgtgattcaacttttccggttaaatctgatcagaaattacgaaaacagttaaaaca  12658200                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                   --                                                                                                 <---                                   <---------HSFB2a(2)                                           <---                                   --------->HSFB2a(2)                                           <---                                --------->ARR14(2)                                               <---                                --------->GLK1(2)                                  ---------->DOF2 <-                                <---------ARR14(2)                             ----------->RAV1(2) --                                <---------ARR11(1)                             --------->At4g35610 --                             <---------------AGL15                             <---------At4g35610<--                            ----------------->AGL2                          <------ZmHOX2a(2)    <---                            <-----------------AGL3                         <---------ARR14(2)    <---                      <---------ANAC55(2) ----------->RAV1(1)              <---------ARR11(3)   <----                      --------->ANAC55(2) --------->MYB52(1)               --------->ARR14(2)------->MYC2            ---------->DOF2 ----------------->AGL3                         --------->ARR11(3)<-------MYC2           <------ZmHOX2a(1)------>ZmHOX2a(2)------->GAMYB ----------->GT1--------->At4g35610------->MYC3           ========================HOX2a_HOX2a    ----------->TGA1--------->YAB1 ----------->HVH21<-- ------->ZAT6 ----------->GT1--------------->AGL15----------->HVH21       <---------At4g35610<-------MYC3   aacactagatcgaggaaagaaaaaacgtgatccaaatctagaaacaacagagatgacgaaatggagaataagaagcagatcacctgaaaggagcacgttg  12658300  <------NtERF2 ------>NtERF2 ---------DEAR3(1) ---------ANAC46 -------->DEAR3(1) ------->ATERF1(1) ------RAP2.3(2)                                                                       <---------YAB1 ------RAP2.3(3)                                                                       <---------ATHB12 ------RRTF1(2)                                                                        --------->ICU4 ------ANAC46                                                                         <---------TOE2(3) -----NtERF2                                                           <---------AHL20(2) ---->NtERF2                                                          <---------AHL20(2)    --------- ------->RAP2.3(1)                                                    --------->AHL20(2)<---------ICU4 -------RRTF1(1)              <---------ANAC46                        --------->AHL20(1)--------->ATHB12 ------DEAR3(1)               <---------LBD16         --------->HSFB2a(1)         <----------DOF2 ------RAP2.6(2)              <---------ANAC58        <---------HSFC1(2)        ----------->GT1 -----LBD16                   <---------ANAC58        <---------HSFB2a(1)       <---------DEAR3(2) -------RAP2.3(1)    <----------DOF2          *TSS    --------->HSFC1(2)       <---------DEAR3(1)   cggcgtcgatcgagagagagagacttttgttttcgggcaattgagcgactgagagaaggttctatcggaaaatttaatgggccggtttaatgatttcaat  12658400                       <---------WOX13(1)                      <------------CBF                    <---------AHL20(2)                 <---------HSFB2a(2)                ----------->GT1                     --------->ARR14(2)                           <---               --------->LBD16                      <---------ARR14(2)                      <--------             <---------LBD16                      --------->LBD16                          --------->ICU4          --------->ZAT14                       <---------LBD16               ---------->DOF2 <------          <---------ZAT14                     -------->P             <-----------TBP   <-----------TGA1 --->CBF  ---------->DOF2                --------->ZAT6--------->HSFB2a(2)  <---------ZAT6 <---------YAB1   cgcttaaaccagtaaaccgggtttaattgaaaaatacggtcgaacactaacccggttttggaagtcttcgtttatgtagtgaaaggcttcgtcatcatcg  12658500                                                                                                  <--                                                                                                  <--                                                                                           ----------                                                                                           <---------                                                                                          -----------                                                                                          -----------                                                                                          -----------                                                                                          <----------                                                                                          <----------                                                                  --------->MYB52(2)      <----------                                  <---------GLK1(2)              <-------TEIL             -----------                                  <---------ARR11(3)          <---------HSFC1(2)         <-----------GT1                         ---------->DOF2                      --------->HSFB2a(1)        <-----------    *TSS    <---------TOE1(3)     --------->ARR11(3)          --------->HSFC1(2)         <----------- ------MYB52(1)      --------->ANAC46                        <---------TOE1(3)     <---------ANAC58 - -ICU4 --------->At4g35610--------->DAG2                     <---------TOE2(3)     <---------ANAC58 < ---YAB1    <---------TOE2(3)   ----------->ARR10    <----------DOF2   <-----------GT1  <-----------GT1   ttgtttcacagttgaaggttttcacgagaaagtgaagatttttggagaaaccatacttttgtgaaggttcgtttcaccttcaatttcgtttttccaattt  12658600        <---------ICU4       <---------ATHB51       <---------YAB1      <---------MYB52(1) <---------ARR14(2) --------->ARR14(2) -------ANAC58 -------ANAC58 ----->AGL15 ------AGL15 ------>AGL3 ------>AGL1 ------>AGL2 -------AG -------AGL1 -------AGL2                                  <---------ANAC55(2) ------>AG                       <-----------HVH21 ------AG                      <---------TOE2(3) ------->TEIL                                      -- ------AGL1--------->YAB1      <---------TOE1(3)<---------CCA1(2)                                <--- -------->GLK1(1)          <----------DOF2    --------->ANAC55(2)                              ====== ---------GLK1(1) --------->GLK1(2)    <---------WOX13(1) <----------DOF2                      <-----   gggtatccgataattgtaagaatttggggttttaaggtcagattgattatgtatctaatgcttttacattgtagtagctcgtgttttggattttgaagga  12658700                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                               <-----                     ------>ZmHOX2a(2)                                                         ------          <-----------GT1                      <-------TEIL              --------->ANAC46   --------- ------->ATHB12    <---------ARR11(3)         --------->CCA1(2)          --------->ANAC58<---------At4g35610 ------WOX13(1)    --------->ARR11(3)        --------->ARR14(2)          --------->ANAC58--------->ZAT2 ===========================HOX2a_HOX2a      <---------ARR14(2)   ----------->GT1        <---------ZAT2 -ZmHOX2a(1)  <----------DOF2     --------->YAB1      ---------->DOF2  ---------->DOF2   --------->At4g35610   ttgatttctaaatttccttttgatcttgtagttgaatcacaatggaagattcagagaaaagaaaacagatgttaaaagcaatgcgaatggaagctgcagc  12658800  Previous    Next  AGI:  At4g24490.1    Description:  protein binding / protein prenyltransferase. similar to geranylgeranyl transferase alpha subunit-related / RAB geranylgeranyltransferase alpha subunit-related [Arabidopsis thaliana] (TAIR:AT5G41820.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61594.1); contains InterPro domain Protein prenyltransferase (InterPro:IPR008940); contains InterPro domain Protein prenyltransferase, alpha subunit; (InterPro:IPR002088); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 12655069    to: 12658346    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g24500.1    Description:  hydroxyproline-rich glycoprotein family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO61596.1) Range:  from: 12658504    to: 12660615    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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