Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    --------->LBD16 <---------LBD16 ---------LBD16 ------>P ------->MYB52(1) ----ARR11(1) ->TEIL<------ZmHOX2a(1)             <---------ANAC46 --->ARR14(2)                        ----------->GT1 ----ARR14(2)                        <---------ANAC58     <---------ARR11(3) ------ARR10                         <---------ANAC58     --------->ARR11(3) ---ARR14(1)                   <---------YAB1   <---------ANAC58 ---CCA1(2)        --------->At4g35610 <---------ANAC46 <---------TOE1(2) -ANAC58           <---------At4g35610 --------->ALFIN1------>ZmHOX2a(1)           <---------ALFIN1 - -ANAC58 <------ZmHOX2a(2)    <---------TOE2(3) <---------ANAC58                --------->ZAT6     <- -ANAC46--------->ARR11(3)   <-----------GT1  --------->ARR11(3)       --------->REM1(1)   <---------MYB52(2)   ctaccgggaggatcaagcttgagctcaaattttacgatggggtgtatagttcttgtcctaggtcttcttctctacaacattcccactactccaactaaac  12645300        --------->ARR11(3)                                                     <---------ANAC58        --------->ARR14(3)                    <---------ZAT18                  <---------ANAC46        <---------ARR11(3)                    --------->ZAT18                  <---------ANAC58 --------->ANAC58                      <----------DOF2                        <-------TEIL          < --------->ANAC58                 --------->YAB1<----------DOF2             --------->ARR14(2)  <---- --------->ANAC46    --------->ANAC58  ------>ZmHOX2a(1)                    <---------ARR14(2) <----- ------>GAMYB ------>ZmHOX2a(1)  <---------ATHB12    <----------DOF2       ------>MYB83        <----- --------ALFIN1      --------->ANAC58  <---------DAG2<---------DAG2        ------>MYB46(1)     ------   aacacaccaagacctcctaacacactcactcaccattcatcctttttgtgcattacttttttttttgttgataaaccaaattcgtgtaatttcccaattt  12645400                                          <---------AHL20(2)                                      <---------RVE1(1)                                      <---------CCA1(1)                             --------->ARR14(2)       <---------WRKY18(1)   <---------ARR14(2)      --------->WRKY38(1)   --------->KAN4(1)    <---------ANAC58      --------->WRKY12      <---------KAN4(1)    <---------ANAC55(2)      --------->WRKY45      --------->HSFB2a(1)  <---------ANAC58    <----------DOF2         <----------TaMYB80   --------->ANAC55(2) -----------GT1             <---------HSFB2a(1)  <---------ANAC55(1) -----AHL20(2)             <---------KAN4(2)     <---------ANAC46 ----AHL20(1)       <-------TEIL     <---------ARR11(3) ----AHL20(2)      --------->CCA1(2) --------->ARR11(3)                                 --------->YAB1 --->AHL20(2) ---------->DOF2--------->KAN4(2) <-----------GT1   ---------->DOF2    ---------->DOF2   tttttcctttgaccatcaaagatacatagaatattctcagatattttttttacgtgaaaaactagcttaaagaaaaaaaaaaaaaaaaaagaataacaag  12645500                                           --------->MYB55(2)                                           <---------DEAR3(2)              <---------MYB59              <---------MYB46(3)           <---------MYB46(3)              --------->TOE2(3)              ----------->GT1            <------NtERF2        --------->ZAT2              <------MYB46(1)           <-----------HVH21     <---------ZAT14         <----------DOF2              <------MYB83   <---------ZAT14                  <---------ZAT2         <---------DAG2 <            <---------WOX13(1)--------->DAG2                  --------->ZAT14     <-----------GT1  <-          --------->ATHB12   --------->ZAT14                 --------->ALFIN1---------->DOF2    <----         <---------YAB1      ---------->DOF2       <---------LBD16      <-----------GT1        <-----   aagagaaatttgtgattggttaaaaatccagtaaagtagagtcgtcgggtcgtctcggaagcagtgctgcgattttacctaaagtcacctttttttttta  12645600                                               --------->DEAR3(1)                                             ------>NtERF2                                            --------->ANAC46                                           <-------MYC3                                           ------->MYC3                                           ------->MYC2              ----------->HVH21            <-------MYC2        <---------ARR14(2)                --------->ANAC58   <-------GAMYB                          --------->ANAC46   <---------ANAC46                       --------->ANAC58   ----------->GT1                     <---------REM1(2)  --------->MYB55(2)                ------>ZmHOX2a(1)  <---------MYB46(3)             ------>NtERF2<------NtERF2  <---------DEAR3(2)   ------>ZmHOX2a(1)<---------ALFIN1 <---------ANAC46      ==================================HOX2a_HOX2a ---------MYB52(1)    <---------MYB59 <---------ALFIN1 ----------HVH21  <---------DEAR3(2)=====================HOX2a_HOX2a               <-----------HVH21 -----At5g28300------>NtERF2     <---------ATERF1(1)    *TSS                  --------->HSFB2a(2) ------GT1    --------->DEAR3(1)--------->DEAR3(1)<------ZmHOX2a(2)           <---------HSFB2a(2)   ccgtcgggtgaattcgacgacggtcctaatctcgcctcctccacacgcgccgatcaccatctctctctgtaatcgctcttctcgatgtcaactatttcct  12645700                                                                                                    -                                                                                                   --                                                                                                 <---                                                                                      --------->ARR14(2)                                                    <---------ATHB12        <----------DOF2      <---                                               ------>ZmHOX2a(1)           <---------DAG2       <----                   <---------TOE1(3)          --------->TOE2(3)         <-----------------AGL1  <----              <---------ZAT6               <---------ARR11(3)        <---------ARR11(3)         -----             <---------TOE1(3)    <----------DOF2 --------->WOX13(1) --------->ARR11(3)      --------        <----------DOF2        ---------->ID1 --------->TOE1(3)   --------->DAG2    <---------HSFC1(2)   <----------DOF2 <---------TOE2(3)      <---------CCA1(2)      ---------->DOF2    --------->HSFC1(2)   tcttcctttgctcttagggttagggtttattttgttctttctctatatccttcaatcaatgtgaaaaaaaagctctcccttttggcagtttccgatgttt  12645800                                   --------->DEAR3(1)                                  --------->DEAR3(2)                                 --------->SPL7                              <------MYB83<---------At4g35610                              <------MYB46(1)  <------NtERF2              <---------------AtSPL3 -------->ETT(2)             <---------------AtSPL8                            --------->TGA1a -------->ID1                --------------->AtSPL3                            --------->O2 ---MYB83                   <---------WOX13(1)                             <---------At4g35610 ---MYB46(1)               <---------GLK1(2)    --------->LBD16            --------->At4g35610   ---- -----AtMYB61              --------->ARR14(2)   <---------At4g35610       --------->ANAC46     ------ -----MYB46(3)             <---------ARR14(2)   --------->At4g35610     ------>NtERF2         <------ ---->MYB59          <-----------GT1------>NtERF2         --------->ARR11(3)<---------MYB52(1)<------ ->ATHB12          <---------MYB52(2)     --------->At4g35610        ------>NtERF2   <-----------HVH21   ggtcgccattcgattatcccaaataaccagattggtaccgcctctgcttccgctggtgaagaccatgtctctgcctccgctacgtctggtcacattcctt  12645900                                                                                          ------>ZmHOX2a(2)                                                                                         <------ZmHOX2a(2)                                               ------>NtERF2                            --------->ARR14(2)                                             --------->ATERF1(1)                      --------->DEAR3(1)                                            <---------ATERF1(1)                  <---------ANAC58    --------->CCA1(2)                    <---------At4g35610                     <---------ANAC58   <---------ARR14(2)    ------>ZmHOX2a(1)  ------>NtERF2                       <---------At4g35610   --------->ARR14(2)  ==========================RAV                          <--------P<---------ARR14(2) ----->SPL7            ----------->RAV1(2)--------->ATERF1(1)                <---------ANAC58 >ZmHOX2a(1)           <---------ICU4    --------->ZAT2                      <---------ANAC58<------- ---ANAC58   <---------GLK1(1)           --------->At4g35610                <---------MYB46(3) ---ANAC58   --------->GLK1(1)       <-----------RAV1(1)    <---------HSFB2a(2) --------->At4g35610   acgacgatatggaagaaatccctcatcctgactctatctatggtgctgcctccgatttgattcccgatggctctcaattggttgctcaccgatccgatgg  12646000                      <------NtERF2                                                       -----------                      <---------LBD16                                                <------MYB83                     --------->MYB52(1)                 --------->LBD16             <---------AtMYB61                     ------>NtERF2                     <---------ANAC46             <---------MYB46(3)                  <-----------HVH21             ------>ZmHOX2a(2)                   <---------DEAR3(1)                  ------>NtERF2                <------ZmHOX2a(2)                   <---------MYB52(1)       <---------ANAC58                       <---------ARR11(3)     --------->ANAC55(2)<---------At4g35610       <---------ANAC46                       --------->ARR11(3)    <---------TOE2(3)<------MYB46(1)       <---------ANAC58 --------->LBD16<---------At4g35610         <-----------GT1 <-----------------       --------->ANAC55(2)             --------->At4g35610<---------ETT(2)        <-------GAMYB -----       <---------ANAC55(2)         --------->ARR14(2)  <---------ANAC55(1)       <---------ANAC58       <---------ANAC55(1)         --------->GLK1(2)   <---------ANAC58          <---------ANAC46     <-----------GT1<---------ALFIN1   --------->ZAT2  <---------ANAC58          <---------ANAC58 --MYB52(1)      --------->ANAC46  <---------ARR14(2) <-----------------------TaNAC69(2)--------->At4g35610   ctctgaattacttgtttctcggccaccggaaggggcgaatcagcttacgatctcgttccgtggacaagtttacgtttttgatgccgttggtgctgacaag  12646100                                                                                       --------->ATHB12                                                                                      --------->ICU4                                                                                      <---------YAB1                                                                                  <---------MYB52(2)                                                                                 ====================                                                                                 ====================                                                                                 --------->ANAC55(2)                                                                                 --------->ANAC55(1)                                                                                 --------->ANAC58                                                                                 --------->ANAC46                                                                                 <---------ANAC55(2)                                                                                 --------->bZIP60(2)                                                                                 --------->TGA1a                                                         --------->YAB1          --------->ANAC58                                                  --------->At4g35610         --------->ZAT18                                                  ----------->RAV1(2)         <---------ZAT18                                           <---------MYB46(3)           <---------ANAC58 >HVH21 --------------->AtSPL8  <---------ZAT14   <---------At4g35610   <---------ANAC46 ----WRI1                    <---------ANAC46    ------->TEIL           <---------ANAC58        <---- ------>GT1      <----------DOF2--------->ZAT14<-------TEIL       ----------->HVH21 --------->MYB52(1)   gtaattctactctgtccctcttttgttatttgtgtgaagtctcgatggatgcatctgaaacataacatctgatggcttagggcacgtaacgattgcctct  12646200  Previous    Next  AGI:  At4g24460.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19380.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61583.1); contains domain Multidrug resistance efflux transporter EmrE (SSF103481) Range:  from: 12642897    to: 12645457    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g24470.1    Description:  ZIM (ZINC-FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM); transcription factor. Identical to GATA transcription factor 26 (TIFY1) [Arabidopsis Thaliana] (GB:Q9LRH6;GB:Q0WNU9;GB:Q9STU8); similar to ZML2 (ZIM-LIKE 2), transcription factor [Arabidopsis thaliana] (TAIR:AT1G51600.2); similar to ZML2 (ZIM-LIKE 2), transcription factor [Arabidopsis thaliana] (TAIR:AT1G51600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61588.1); contains InterPro domain Zinc finger, NHR/GATA-type; (InterPro:IPR013088); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679); contains InterPro domain CCT (InterPro:IPR010402); cont Range:  from: 12645656    to: 12647975    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version