Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <---------ICU4                                    --------->YAB1                                   --------->ICU4                                   <---------YAB1                                 --------->YAB1                          <------ZmHOX2a(1)     <---------REM1(1)--------->ALFIN1--------->bZIP60(1)                                 ---------->DOF2 ----->GAMYB        <---------At4g35610                                                   <---------DOF5.7(2) ----->At4g35610  <-----------RAV1(2) <---------bZIP60(1)               ----------->GT1 --------->DOF5.7(2) ->ANAC58--------->At4g35610    --------->ICU4             ------>ZmHOX2a(1)          --------->ANAC58 ->ANAC58<---------At4g35610<---------YAB1     ---------->DOF2      --------->MYB52(1)--------->ANAC58   actgcaaatgtagcagaattacaggtgaggatgaatgatgatgacacagaaaagactactcctatattcacaacgggtgtaatcgggcacgataacgcga  12632800                                                                     <------ZmHOX2a(1)                                                               --------->HSFB2a(2)             <-------TEIL                                      <---------HSFB2a(2)            --------->CCA1(2)                              <---------ANAC58     --------->CCA1(2)                                     <---------ANAC58  --------->ANAC58                                        --------->HSFC1(2)  --------->ANAC58                                       --------->GLK1(2)     <----------DOF2      <  --------->ANAC46            <----------DOF2 ------->TEIL<---------HSFC1(2)<---------ALFIN1  -------   ttgcaagacatgggatacatggaatctataggctttataatgtggatgtaccaagtgagaagcttgtggaaggagacaacactttgttcttgacacaaac  12632900                <----------DOF2      <---------ALFIN1                               <------ZmHOX2a(1)      --------->AtMYB61                        <---------HSFB2a(2)     --------->MYB46(3)                        --------->HSFB2a(2)                               ----   --------->AtMYB61                        ------>NtERF2                                       <----  --------->MYB46(3)                       --------->ANAC46         --------->YAB1   <----------DOF2 ---------WRKY18(1)                     <---------ARR14(2)         <-------TEIL   <------ZmHOX2a(1) -->ANAC46    <-----------------AGL3    --------->ARR14(2)  <----------DOF2 --------->ZAT6   --------   catgaccaccactggagcctttaatggtctcatgtatgactatatccgcctcgaaggacctcctttagattcatactctcactaggacttttagtcacat  12633000                     <---------ANAC55(1)      --------->ANAC55(2)      --------->ANAC55(1)    <----------DOF2      --------->ANAC46   <--------P      --------->ANAC58  <-------GAMYB      --------->ANAC58--------->LBD16   <---------ARR14(2)<---------ANAC46                            <-----------RAV1(1)             <---   --------->ARR14(2)<---------ANAC58 --------->YAB1 <---------AHL20(2)                          <--- ----->ATHB51        <---------ANAC58 --------->AHL20(2)     <---------ANAC58             <---------ARR14(2) -----YAB1          <---------LBD16--------->YAB1   --------->AHL20(2)                    --------->ARR14(2) --------------->TaNAC69(2)  <---------DAG2 ---------->DOF2  <---------ANAC58<----------DOF2  <------   tattgtatacgcaattttgtattgcgggttactttactaataaaaaaaaagacattatatgggccttgtgttgggccttctttctaatctcagatttgac  12633100                                                                                   ----------->GT1                                                                             <---------ARR11(3)                                                                             --------->GLK1(2)                                                                       --------->AtLEC2        --------->ANAC58                                             <---------ANAC58        --------->ANAC58            ------>NtERF2                    <---------ANAC58      --------->MYB52(1)           --------->DEAR3(1)    ----------->TBP     --------->ARR11(3) -------DOF2          ----------->GT1                <---------ANAC46--------->At4g35610  *TSS ------DAG2   ----------->GT1     --------->ORA47(2)------>NtERF2 <---------MYB52(1)     ---------->DOF2 -----GT1 ---------->DOF2  --------->ICU4        <---------At4g35610 <---------ANAC46  ----------->TBP   tttattacaaacgaaagggtaagaatgtaatttttcgccgactcgatctatcgctgcctatatatacagttacctgcaaaatctagggtataaaagcccc  12633200                                                                                               ------                                                                                            <--------                                                                                            ---------                                                                                           <---------GLK1(1)                                                                                           --------->GLK1(1)                                                      ------>ZmHOX2a(1)                  <------NtERF2                                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->LBD16                                                 <---------ZAT2                       <------NtERF2                                                 <---------At4g35610                  --------->ATERF1(1)                                                 --------->HSFC1(2)                  ------>NtERF2                                                 <---------HSFC1(2)                  <---------ATERF1(1)                                             ------->GAMYB                          --------->DEAR3(1)                                             ==============================================MYC_MYB           --------->ANAC46               --------->MYB52(1)    --------->ORA47(1)  <---------DEAR3(1)          --------->LBD16              --------->ANAC58        --------->DEAR3(1) <-----------HVH21          ------>NtERF2                --------->ANAC58    --------->MYB46(3)    ====================         --------->DEAR3(1)         <---------ATHB12----------->RAV1(2)          --------->TGA1a      <-----------GT1          --------->ANAC58  --------->HSFB2a(1)             --------->O2 ------>ZmHOX2a(2)    <-----------GT1            --------->ANAC58  --------->At4g35610  <-----------ARR10--------->DEAR3(1) <---------ICU4              ------>ZmHOX2a(1)   <---------HSFB2a(1) <---------CCA1(2)<---------LBD16 --------->AHL20(2)      --------->ARR11(3) --------->ANAC58 <---------At5g28300 <---------TGA1a  --- <---------AHL20(2)      <---------ARR11(3) --------->ANAC58<---------ALFIN1     <---------O2<------ZmHOX2a(2)   taattttttctccgcccaagagacaaaaatccttcgcaatcgagcaacggaagctcctgcatccaccgtccaaatctcttctaacgtcgccggagatcgg  12633300     --------->ARR14(2)                                                          <---------GLK1(2)     <---------ARR14(2)                                                          --------->ARR14(2)    <---------MYB52(1)                                              <------NtERF2<---------ARR14(2) ----->GT1             <---------CCA1(2)                          <---------ANAC46 -ARR14(2)      --------->LBD16  <---------TOE2(3)                <---------ANAC58               <--- >ARR14(2)     --------->ANAC55(2) <---------ARR11(3)             <---------ANAC58--------->GLK1(1) ========bZIP_DOF --------->ARR14(2)        <-------TEIL<----------DOF2         <---------At4g35610 ------->DOF2  <---------ANAC55(2) --------->ARR11(3)  <---------DAG2      <----------DOF2      -----   taaaccggttcttcatcccgtattcatctcttattgaggtcttagattcatctagcaccttttttttggcgtcgaaactttcagattccctatttgtaat  12633400                                                      <---------HSFB2a(2)                           <                                                   <---------MYB52(1)                        <------ZmHOX2a(2)                                                  <-------GAMYB                             <--------                                                 ------>ZmHOX2a(2)                          ---------      <---------ARR14(2)                         <---------MYB46(3)             <---------At4g35610--      --------->ARR14(2)                        <------ZmHOX2a(2)               --------->At4g35610<-   <---------ANAC46         <---------ANAC46   <---------ARR14(2)        <---------ANAC46  --------->GLK1(1)   <---------ANAC58         <---------ANAC58   <---------ARR11(3)        <---------O2    ============   <---------ANAC58    <-----------RAV1(1)     --------->ARR11(3)        --------->O2    <------ZmHOX2a(1) ------AHL20(2)        <---------MYB46(3) --------->MYB52(1)            <------NtERF2    ============ ---->ICU4<---------YAB1    <---------ANAC58   --------->ARR14(2)      ------>NtERF2  <-----------RAV1(2)   tagttgcgaattttgattcgacgatttgttgctcgaatttgaatcaacagatcgttggggaagtagagaatggcgacgtttgagctgtacaggagatcga  12633500                                                             <---------At4g35610                                                             --------->ZAT2               <---------ANAC46                   <----------CDC5 ------>ZmHOX2a(2)                               <---------At4g35610 ------ZmHOX2a(2)                                --------->At4g35610 -ARR14(2)   --------->MYB52(1)                --------->ZAT14 >ARR14(2)  ----------->HVH21                  --------->SPL7<---------ZAT2 ------->ARR14(2)                              <---------ZAT14   --------->STY1(2) --------ARR14(2)                            <---------SPL7  --------->At4g35610 ======HOX2a_HOX2a                         --------------->AtSPL3<---------STY1(2) =======HOX2a_HOX2a               <---------MYB46(3)     <----------CDC5      ------>ZmHOX2a(1)   cgatcgggatgtgtctgacggagactttggacgagatggttcagagcggtacgctgagccctgagctagctatccaagtccttgttcaatttgacaaggt  12633600                                  --------->ATHB12                                 <---------YAB1                              <------NtERF2                            <---------ANAC58                            <---------ANAC46                            <---------RAP2.6(2)                            <---------ARR11(3)                            <---------ANAC58                       <----------DOF2  <---------ANAC58                  <---------WOX13(1)                               <---------DAG2   <---------ANAC58        <----------DOF2    ---------->ID1                 <------------------------ANAC81<---------REM1(1)     <-----------GT1   ------>ZmHOX2a(2)                 <-----------GT1  <---------GLK1(1)    <-----------GT1  --------->ARR11(3)       <---------TOE2(3)  ------>ZmHOX2a(1)<---------YAB1   --------->AHL20(2)<---------ARR11(3)       ---------->ID1<----------DOF2--------->ARR11(3)   ttcaatttaacttttatttgactgatcttggcgtcttgattcgtttttgtggttttttttttctttcctctttttgatatctgtatgcttgttgtagtcc  12633700  Previous    Next  AGI:  At4g24430.1    Description:  lyase. similar to lyase [Arabidopsis thaliana] (TAIR:AT1G09880.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61576.1); contains InterPro domain Carbohydrate-binding-like fold; (InterPro:IPR013784); contains InterPro domain Galactose-binding like (InterPro:IPR008979); contains InterPro domain Rhamnogalacturonate lyase (InterPro:IPR010325) Range:  from: 12630728    to: 12633085    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g24440.1    Description:  transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S). Identical to Transcription initiation factor IIA gamma chain (TFIIA-S) [Arabidopsis Thaliana] (GB:Q39236;GB:O49348); similar to hypothetical protein [Vitis vinifera] (GB:CAN60284.1); contains InterPro domain Transcription factor IIA, helical; (InterPro:IPR009083); contains InterPro domain Transcription initiation factor IIA, gamma subunit, C-terminal; (InterPro:IPR015871); contains InterPro domain Transcription factor IIA, beta-barrel; (InterPro:IPR009088); contains InterPro domain Transcription initiation factor IIA, gamma subunit; (InterPro:IPR003194); contains InterP Range:  from: 12633190    to: 12634770    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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