Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    --------->HSFB2a(2)                                      --------->ATERF1(1)                                     <---------ATERF1(1)                             -------->P           <---------HSFB2a(2)                      --------->GLK1(2)     --------->GLK1(2)                     <---------ARR14(2)--------->ETT(2)                     --------->ARR14(2)<---------ETT(2)                     <---------GLK1(2)<------NtERF2                              <---------ZAT18                   --------->LBD16  <---------ANAC58                <---------ARR11(3)    <---------ZAT14                 <---------LBD16    <---------ANAC46                --------->ARR11(3)    --------->ZAT14                --------->MYB52(1)  <---------ANAC58 <---------GLK1(2)           --------->ZAT18 ----               <-----------GT1      <---------DEAR3(1)             --------->HSFB2a(1)   <---------ZAT6   aaaaccagatggttttgttaccggaatctcttaccagggcgtcgacaatctactagaaactcacaacgaagatttcaatcgagggtacttagtgtagaat  12630300          --------->AtLEC2                                                                          -  <---------ANAC58                                                                                 --  <---------ANAC58                    ----------->RAV1(1)                                          --  <---------ANAC46                 <-----------GT1              <-----------RAV1(2)             ----- ----->ATHB12------->TEIL       <---------ICU4        <---------ANAC46       --------------------->WRI1   gtttgcttatacatgcaccagtctattactaaacttattacaacatatgaaatgttgtgtccaaactcaggtactgggaccttgtttggagcgatgaagg  12630400        --------->MYB46(3)      --------->ARR14(2)   --------->HSFB2a(2)      <--------P --------->HSFB2a(1)   <---------HSFB2a(2)     --------->At5g28300                             <---------AHL20(2) ----------->RAV1(2)      ----------->GT1                            <----------DOF2 ----->NtERF2     <---------ARR14(2)   <---------HSFB2a(1)    <------ZmHOX2a(2) ------->ANAC58   --------->ARR14(2)   ------>ZmHOX2a(2)     --------->ARR11(3) ------->ANAC58  --------->GLK1(1)   --------->ARR11(3)      --------->AGP1--------->AHL20(2) ------>HVH21    <---------GLK1(1)   <---------ARR11(3) <-----------GT1--------->AHL20(2)   gacgcctggaaccacagggaaatccgagcggtaagtatagatcgttccatcgagcttataacagatcaagtctttatataaatgtttataaacttggctg  12630500                                                         <-----------GT1                                                       <---------HSFB2a(1)                                                       --------->HSFC1(2)                                                       <---------HSFC1(2)                                                       --------->HSFB2a(1)   <---------GLK1(2)       ---------->DOF2                            <--------P <---------------AGL15        --------->ANAC58     <------ZmHOX2a(2)                      --------->ARR11(3)     --------->ANAC58       --------->ANAC46   <------ZmHOX2a(1)            <---------ZAT6  ----------->GT1    --------->ANAC58       --------->ANAC58   aggcaggatcaaaggcacaagttttgaagtagtagtggaaaatgaagagctggtagaaatttccttctcaaggaaatgggattcttctctccaagacagt  12630600                                               ------->TEIL                                     <----            <---------ICU4                   <-------TEIL                                 <---------YAB1          <---------TOE2(3)                 --------->AtLEC2               --------->ATHB12 ---------       <---------YAB1            <---------AHL20(2)           ----------->HVH21     <------------CBF     ------>ZmHOX2a(1)           --------->AHL20(2)         --------->ALFIN1      --------->ARR11(3)<   attgctcctattaatgttgacaagaggtatgtcattttaatacaacatgcatttatgtgtgagtgtgacagagagtttgatttggatattgtatcattca  12630700                   <-----------GT1        <---------ANAC58                                                    <---------ANAC58        <---------ANAC55(2)                                           <----------DOF2        <---------ANAC46 <---------GLK1(2)                          <---------ZAT2        <---------ANAC58 --------->ARR14(2)                 --------->ARR14(2)                     <- --------->YAB1    ------->TEIL                             <---------ARR14(2)                   <--- -----TOE2(3)   <---------REM1(1)                       <---------LBD16     <---------ANAC58     ---- >WOX13(1) ---------->DOF2                             --------->MYB52(1) <-----------GT1--------->ANAC58 -------TEIL --------->ICU4 *TSS                   --------->GLK1(2)<---------At4g35610  --------->ANAC58   ggttcataatgcgtaaagatgtaactggattctactcatatgcgatatttgagcatctagcggaatggccagcttttaacttgcctcagacaaggattgt  12630800                 ----------->GT1                 --------->ANAC58                 --------->ANAC46                 <---------ANAC55(2)            <----------ID1          ---------->DOF2       <---------ANAC46                               <---------------AGL15      <-------TEIL                                   =================================MADS_MADS   <---------HSFC1(2)                            ---------->DOF2    <-----------------AG   --------->HSFC1(2)                         --------->TOE2(3)   --------->ARR14(2)  --------->ANAC58      ---------->DOF2       --------->TOE1(3)   <---------ARR14(2)  --------->ANAC58    <---------MYB52(2)<---------ICU4--------------->AGL15 --------REM1(2) --------->ANAC58 <---------ARR11(3) ----------------->AGL3                         - ------ETT(2)    --------->ANAC55(1)   <---------ATHB12          <----------TaMYB80             ----- ----->ETT(2)    --------->ANAC55(2) --------->WOX13(1)   --------->YAB1                   <---------TOE1(2)   ctacaagcttcgtaaagacaagtaactaaagttcaatatcaatctttcccttaaaaccaatattagtatatactcatgtggaaagaaaacttgcaggttt  12630900             <---------ANAC46            <---------At4g35610                                                       ------>ZmHOX2a(1)         <-------GAMYB                      --------->LBD16  ---------->DOF2   <---------ANAC58        <---------MYB46(3)                 <---------HSFB2a(2)                 <---------ANAC58 --------->AHL20(1)          <------ZmHOX2a(1)          <---------LBD16   <----------DOF2 --------->ARR11(3)       <------NtERF2    --------->HSFB2a(2)         <---------ARR11(3) -------->AHL20(2)        --------->At4g35610       --------->ATHB12   --------->ARR11(3) <---------At4g35610 ---->AHL20(2)            <---------At4g35610   <------ZmHOX2a(1)  <------ZmHOX2a(1)----------->RAV1(2)   aaatatatggcgattgctgataacaggcagaggaaaatgccacttccagaggatagattggggaaaagaggaagacctttggcttatcctgaagctgttc  12631000                                                                                  <-------TEIL                                                                             ---------->DOF2                                                                           ----------->HVH21                                                                          ------>ZmHOX2a(2)                                                                         <------ZmHOX2a(2)        ---                                                                         --------->CCA1(2)        <--                                                                        --------->AGP1            ---                                                                        <---------AGP1        ------>ZmHOX2a(2)                                                                        --------->ARR11(3)   <-------                                             --------->ANAC58           <---------ARR11(3)  ---------                                     <-------TEIL                       <---------ARR14(2)  <--------                          ---------->DOF2    --------->ANAC58           --------->ARR14(2)  ------->TEIL                     ----------->GT1<--------P   <---------YAB1       ----------->ARR10     <--------          ------>ZmHOX2a(1)      <---------AtMYB61                  ---------->DOF2<---------AtLEC2   ttcttgttcatcctgttgaagacgagtttaaaggagaggttgatgacaagtatgagtattcaagtgagaacaaagatctgaaagtgcatggatggatctc  12631100                     <------NtERF2                    ------>NtERF2                   <---------ATERF1(2)                   --------->ATERF1(2)                  <---------ANAC46                  <---------ANAC58                  <---------ANAC58                       <---------ANAC58                 --------->ZAT2                          <---------ANAC46                 --------->At4g35610                <---------O2                <---------MYB46(3)                  --------->ZAT2                <---------AtMYB61                   --------->At4g35610        --------->ARR14(2)                       <------ZmHOX2a(2) ------>ANAC46 <--------P                       <---------ARR14(2) -------ANAC55(2)<---------ZAT2        --------->ICU4    <---------ANAC58                      <----- ------>ANAC55(2)<---------At4g35610   <---------ATHB12 <------NtERF2                 <--------P --GLK1(1)    <-------GAMYB<---------ICU4      --------->At4g35610       --------->TOE2(3)--------->PCF2 >ARR11(3)    <---------ANAC58   ------>ZmHOX2a(1)<-----------RAV1(2)    <---------MYB59<------MYB83 -AGP1  <---------ARR14(2)<---------ATHB12     <---------At4g35610    <---------GLK1(2) <------MYB46(1) -ARR11(3)    <---------ANAC58   =======================HOX2a_HOX2a--------->YAB1   <-----------RAV1(1)   acataacttggatttgggttgctggcaaatcattcctagcaatgagttcagatcaggtggcttgtccaaacagaaccttacttctcatgttggtcccatc  12631200  Previous    Next  AGI:  At4g24430.1    Description:  lyase. similar to lyase [Arabidopsis thaliana] (TAIR:AT1G09880.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61576.1); contains InterPro domain Carbohydrate-binding-like fold; (InterPro:IPR013784); contains InterPro domain Galactose-binding like (InterPro:IPR008979); contains InterPro domain Rhamnogalacturonate lyase (InterPro:IPR010325) Range:  from: 12630728    to: 12633085    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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