Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <--------                                            <---------ARR11(1)                        <---------ANAC46                                            <---------ARR11(3)                        <---------ANAC58                                            --------->ARR14(2)                     <---------WOX13(1)                                           <---------CCA1(2)                      <---------ANAC58                                           ------>MYB83                           <---------ANAC58                                           ------>MYB46(1)                       --------->ATHB12     <-----------GT1            <---------DAG2                                   <---------MYB46(3) ---->GAMYB               <---------SPL7   <---------ARR14(1)                   --------->WRKY38(1) ----->ANAC58            <---------ANAC46<---------MYB111(1)                 <---------ANAC58 ----->ANAC58          ------->GAMYB     <---------MYB59       --------->ICU4<---------ANAC58   <---- ----->ANAC46       --------->MYB52(1) -------->P     --------->ARR11(3)     <---------ANAC46<------- ->MYB46(3)     <---------ZAT18 <----------DOF2     <---------YAB1    --------->YAB1  <---------ANAC58   cgcaattttagtatccaatgcacaacgacgtatgctttatctaccaaatcttatatgattttggaatgtttatcaaaatgcgttgattgcttatttatct  12593900                                                                                             --------                                                                                             <-------                                                                                             <-------                                                       <----------DOF2                       --------                                                       --------------------->WRI1          <---------AHL20(1)                                                  ------>ZmHOX2a(2)                        <---------ARR11(3)                                                 <------ZmHOX2a(2)                         --------->ARR11(3)                                                 --------->GLK1(1)                         --------->AHL20(1)                                                <---------ARR11(3)                      >>>>>>>>>>GT-3b                                                --------->ARR11(3)                   --------->ANAC58                                               --------->GLK1(1)                     ----------->GT1     --------->GLK1(2)    <-----------HVH21    <---------GLK1(1)                     --------->ANAC58 ---GT1              <---------YAB1       --------->ZAT14                      <---------ANAC58 ------DOF2     ----------->GT1           <---------ZAT14                      <---------ANAC58 ----GT1       <---------ATHB12    <---------ZAT6<---------GLK1(1)             <---------ANAC46    <-   tttctaaattctggccaatagttaaaattgtcacatcgtgttagtgaagagatctctctttgaaatgctcgaagttttgtttcgagcaagaaaaatattt  12594000   <-------GAMYB ---------->ID1                                                                                     - ->AHL20(1)                                                      <---------AHL20(2)        ---------- --AHL20(1)                                                     <---------AHL20(2)        <---------TOE2(3) --ARR11(3)                                                     --------->AHL20(2)       <---------ICU4 ->ARR11(3)      <----------DOF2                            --------->AHL20(2)          --------->ICU4 ----------RAV1(1)                    <-----------HVH21   --------->TOE2(3)        --------->ANAC55(2)   tttgtcgttgttatgggttctttgttttctactaaaatcccttcagacagaagaaaaaaacataaattaaatcccagcgaagcatatgtaataatgtaac  12594100                                                                                                   --                                                                                                   <-                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                <----                                                                                                <----                  --------->AHL20(2)                                                            <----             --------->AHL20(2)                                                                 -----             --------->AHL20(1)                                           --------->DAG2        <----             <---------AHL20(1)                                          <---------ZAT14        -----             <---------AHL20(2)                                          ---------->DOF2        <----   <---------AHL20(2)           ------->GAMYB--------->YAB1              --------->ZAT14        <----   --------->AHL20(1)       --------->MYB46(3)                        ----------->GT1    <------ZmHOX2a(2)   --------->AHL20(2)  ----------->GT1      <---------YAB1        ==============================HOX2a_HOX2a   <---------AHL20(1)---------->DOF2     --------->ICU4           <------ZmHOX2a(1)     --------->ARR11(3) -------->YAB1   --------->AHL20(2)    <<<<<<<<<WRKY18        ------->GAMYB             <---------ARR11(3) ->GT1 ----------->GT1--------->DAG2----------->GT1        --------->MYB52(1)--------->ALFIN1  <-----   aacaataaaatgtaataaaataaaaaagtaacaacaggctgtcaaaatgataaacaaataacaacggaggaagagtaaagtggggaagaagatcaatggg  12594200    ------------>CBF   --------->ANAC46   --------->ANAC58   --------->ANAC58 <---------ALFIN1 --------->RAV1(1)                                                                                  < --------ALFIN1                                                                                     < ----->TCP23                       <----------DOF2                                                  < ----->TCP16(2)                --------->WRKY12                                                     - ----->TCP15(2)            <---------ATHB51                                                       <-- -----TCP11(2)         ------------>CBF                                                        ------ -----PCF5           >>>>>>>>>>WRKY18                                                          <----- -----TCP15(1)       >>>>>>>>>>WRKY40                              <---------At4g35610        ------- ---->PCF5           <---------WRKY18(1)                         <---------ALFIN1             <------ -----TCP16(1)       >>>>>>>>>>WRKY62                            --------->REM1(1)          <-------- ---->PCF2          --------->WRKY45                           <----------DOF2  ------->TEIL*TSS <--- -----PCF2          --------->WRKY38(1)                 <-----------GT1 <-----------GT1    --------->ICU4 -----TCP20------------>CBF<---------ATHB12        <----------DOF2 ----------->RAV1(2) <-----------GT1 ------TCP11(1)     --------->WRKY12        ------>ZmHOX2a(1)  <-----------HVH21-------->P--------->TOE2(3)   cccacacacaattcccaattctttgaccaatagttgacttttcttcctcgagtctttttaactcgcttcacctgttaccatctaccttcttacattatta  12594300  <-----------GT1 ---------ANAC58 ---------ANAC55(2) ---------ANAC58                                                                          <---------WOX13(1) -------->ANAC55(2)                                                                     --------->ATHB12 ---------GT1                                                                          <---------YAB1 --->YAB1                                                                              --------->ICU4 ----ICU4                                                                           ------------>ATHB5 -->ICU4                 <-----------GT1<---------YAB1                       <----------DOF2  ------- ---YAB1               <---------WOX13(1)                                  ========================== -ICU4              <---------YAB1     <---------At5g28300        <<<<<<<<<TBF1 <---------At4g35610 ------YAB1      <----------DOF2      <-----------GT1   <<<<<<<<<TBF1      ------>ZmHOX2a(1)  <------   ttacttactctcttaatcacttttgattaacaaaactaatttaccattgagggttttcttcttccttcttcttcatcctctttgctgctatgattgagct  12594400                                                               <------MYB83                                                               <---------MYB46(3)            --------->YAB1                                     <------MYB46(1)           <---------ATHB12                                   --------->MYB46(2)         --------->WOX13(1)                                   <---------AtMYB61     ------>ZmHOX2a(2)                                        --------->MYB111(2)     ================================HOX2a_HOX2a              <---------DEAR3(1)    <---------At4g35610                                       <---------MYB46(3)    --------->At4g35610                                       --------->MYB55(2)   --------->ARR11(3)                       <---------LBD16  <---------MYB52(1)   <---------ARR14(2)            <-------TEIL                <---------MYB55(1)   --------->ARR14(2)          <---------ARR14(2)          <---------MYB46(3)               ---------   <---------ARR11(3)          --------->ARR14(2)      <---------ZAT2                   ------->TEIL   ------->TEIL                <---------GLK1(2)       <---------At4g35610          --------------->AtSPL3   <---------AGP1             ====================HOX2a_HOX2a<--------P             <---------------AtSPL3 -->At4g35610                 <------ZmHOX2a(1)        --------->ZAT2        <---------ANAC58  <----- ===========HOX2a_HOX2a     <---------TOE2(3)   <---------ARR14(2)           <---------ANAC58  ------ ---At4g35610    --------->ARR11(3)        ------>ZmHOX2a(2)<-------GAMYB  <---------YAB1 <----------DOF2   ccatggatctgcaatcatagttcttcgatttaggattcgtttagatcgcggtttttgagctcggttggtgaagacatatgcttgaaaacgtactttaagc  12594500                                      <---------GLK1(2)                                <----------DOF2                          <---------ICU4                        <----------DOF2                    <---------TOE2(3)                      <-- ->DOF2      <-----------GT1 <-----------GT1               <---------TOE1(3)                    <---- ----At4g35610         --------->TOE2(3)     <----------DOF2 ----------->GT1                --------- --->At4g35610    <---------KAN4(1)--------->YAB1      <----------DOF2                  <----------DOF2   tccaacttcgtctatttacaatattcctttattactttcatattcttctttcaaagtctttaagggttattttgcagtctttctatttgacttttgcgct  12594600                                                                                                 <---                                                          <-----------HVH21       --------------->AGL15   <---------AHL20(2)                                   <---------TOE1(2)         <---------------AGL15 -------YAB1      ----------->GT1                      ------>ZmHOX2a(1)         <-----------------AGL3 ------DOF2 <---------AHL20(2)                     --------->GLK1(2)             ----------------->AGL2 ->ID1     --------->AHL20(2)                     <---------GLK1(2)              ----------------->AGL3   tttattgaattgattttatatggtgacattttggacttggtcttctgttcaagattcctaggtcatctagcttcagtttttggtctatatttagaaacta  12594700                           <-------TEIL                         <---------ARR14(2)                         --------->ARR14(2)                        --------->At4g35610                             <----------DOF2                       ----------->ARR10                          ----------->GT1              <---------YAB1<-----------GT1                      --------->ALFIN1      <---------ANAC46             ------>ZmHOX2a(2)                             >>>>>>>>>RAP2.2             <---------ANAC58            <------ZmHOX2a(2)                            <---------ARR11(3)            <---------ANAC58           <---------ARR11(3)                            --------->ARR11(3)   <---------WOX13(1)           --------->ARR11(3)    <----------DOF2        --------->CCA1(1)    >>>>>>>>>ARR2<-------GAMYB   <---------YAB1   <-----------HVH21 <-----------HVH21 --------->RVE1(1)  <---------YAB1<-----------RAV1(1) ------YAB1--------->AGP1<---------GLK1(2)<---------At4g35610---------->DOF2--------->ATHB12<--------   tgatttcgattgagatcttattggtcagattcacactttgtgtcagcaattctcagaaatatctaaagtggtgacttttgattgtttttgtgtgttgttg  12594800  Previous    Next  AGI:  At4g24290.1    Description:  similar to NSL1 (NECROTIC SPOTTED LESIONS 1) [Arabidopsis thaliana] (TAIR:AT1G28380.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46862.1); contains InterPro domain Membrane attack complex component/perforin/complement C9 (InterPro:IPR001862) Range:  from: 12594292    to: 12598038    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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