Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <---------YAB1                                                                   <---------ARR11(3)                                                                   --------->ARR11(3)                                                             --------->ANAC58         --------->GLK1(2)                                                             --------->ANAC46         <---------ARR14(2)                                                      --------->ARR14(2)             <---------GLK1(1)                                           <---------TOE2(3) --------->ANAC58        --------->GLK1(1)         ------>MYB83                    ---------->DOF2 --------->ANAC46        --------->ANAC58         ------>MYB46(1)         --------->ANAC46     <---------ARR14(2)         --------->ANAC58<---   aagagaaaaccatccatcttccaacaagagagaagacacaactcaaaggttttccaaatacacaagcaatatcattttctcccaaggaaatctgaaatga  12587000                            <----------CDC5                        <------MYB46(1)                    <---------ZAT2                    --------->ZAT2                   ------>ZmHOX2a(1)       --------->ANAC46                 <---------ANAC58          --------->ANAC58                                     -----                 <---------ANAC58   <---------At4g35610                               <---------ANAC58              <----------DOF2     <---------ZAT18                                     <---------ANAC46        --------->GLK1(2)  <---------At4g35610                    <------MYB83        <---------ANAC58       <---------ARR14(2)  --------->At4g35610                    <------MYB46(1)<---------MYB46(3)       <---------GLK1(2)<------MYB83--------->At4g35610          <---------AtMYB61   --------->MYB52(2)       --------->ARR14(2) --------->ALFIN1 --------->ANAC58 --------->DAG2      <---------WOX13(1) ------YAB1 <---------At4g35610   --------->ZAT18         ---------->DOF2     --------->ATHB12  -----   agattagcaaattctgctttcctgctaggtgctgagtgagctaaaacgacattttgtagcaaaagggaaggtagagagagtgattgttacttggacataa  12587100                                      ----------->GT1                         <---------At4g35610                                                        -                         --------->At4g35610                                                       <-                         --------->ZAT2                                                            --                         --------->GLK1(1)                                                         --                         <---------GLK1(1)                                                      <----                         <---------ZAT2                                                        ------                   <---------ANAC46  <---------TOE2(3)                                  <---------ARR14(2)                  --------->At4g35610<---------TOE1(2)                                  --------->ARR14(2)                  <---------LBD16    <---------TOE1(3)             --------->REM1(1)    <---------GLK1(2)                 --------->MYB52(1)  <---------TOE2(2)           <----------DOF2     --------->YAB1<- ---->ANAC58 <------ZmHOX2a(1)------>NtERF2      --------->At4g35610    ----------->RAV1(2)   ------- ---->ANAC58--------->ICU4   --------->DEAR3(1)  <---------At4g35610    --------->At4g35610  <-------   gcatcgtagttgtaaggattagcggagagctccgactccaaggttacaatctgctgattcgactcggcttcatcttctgagtcggaatcagaatcgccgg  12587200                                                                                           --------->ANAC46     --------->At4g35610                                                               --------->bZIP60(1) -------->YAB1         <---------LBD16                                                 <---------bZIP60(1) --------HSFB2a(1)  --------->ZAT2                                                   <-----------HVH21 ------->HSFB2a(1)  <---------ZAT2    <---------At4g35610                         <---------ANAC58 ------->HSFC1(2)   --------->At4g35610                                           <---------ANAC58 --NtERF2           <---------At4g35610 ----------->HVH21                       --------->ZAT18 --->LBD16      <---------ARR14(2)    --------->At4g35610                       --------->ZAT14 --------HSFC1(2)<------ZmHOX2a(2)    ----------->RAV1(2)               ----------->HVH21<---------At4g35610 -->LBD16       --------->ARR14(2)  <---------RAP2.6(2)                 ----------->TGA1 --------->At4g35610 --LBD16 --------->ALFIN1    <------NtERF2                        <---------ZAT6<---------ZAT14  ----   aatcatccgatgaggggggatcagctcgggcagggttttcggctgaagcgtcttccatcttctggtcagtgttactgacgagttcagtgtcatcagccat  12587300                                                                                                    <                                                                                                   <-                                                                                                   --                           <---------LBD16                                                      -----                        --------->GLK1(1)                                              --------->AtMYB61                        <---------GLK1(1)                                           --------->ANAC46<                    <---------ANAC46         <---------At4g35610                   --------->MYB46(3)                   <---------LBD16           --------->At4g35610         <---------ARR14(2)    <-----                  --------->ALFIN1  <---------TOE2(3)                    --------->ARR14(2)    <----- ----->YAB1      --------->ALFIN1   <---------TOE1(3)      <----------DOF2   ------>ZmHOX2a(1)*TSS <-   catcttctcaagtttaagagttggggatttctgggtttagggttttaagctccaaatacaactttgcaaatagcaattcctctcaaacaccactagtcct  12587400                                                                          <---------AHL20(2)                                                                    ----------->GT1                                                               <---------ANAC58 -----------HVH21                                   <---------AHL20(2)   <-----------TBP --------ANAC58                              <-----------GT1   <---------ANAC46 ------->bZIP60(1)                         <-----------GT1     <---------ANAC58 ->ZmHOX2a(1) <----------DOF2          <---------ARR11(3)      <---------ANAC55(1) -----------TGA1         <---------At4g35610 --------->ZAT6    --------->ANAC55(2) ----ANAC58--------->ARR11(3)          <---------GLK1(2)       <---------ANAC55(2)               ---- ----ANAC58<---------ARR11(3)          --------->ARR11(3)     <---------TOE2(3)      ----------->GT1 --------ANAC58      <-----------GT1 ----------->ARR10       <-----------GT1       <-----------TBP  -   tgcgtcacatttagacctttttatttcagttcatttcggaagatttttcactatttattctttttacgtatagtattttataggtttttgtaaaatcaaa  12587500                       <-----------GT1                    <---------ICU4                   --------->AHL20(1)                                                <---------AHL20(1)             --------->At5g28300                                                  --------->AHL20(2)            ----------->GT1                                                 --------->ZAT18 ----->YAB1 <---------ZAT6                                                  <---------ZAT18     ----- -------->MYB52(1) <---------AHL20(1)           <----------ID1         ---------->DOF2       <-------   aataacgaagattactgtaaaaatattacaaattgttttttggtcaaaataccacaaattcaaaaactatattcaaagagcacataatatatgttatcct  12587600                              <---------AHL20(2)            <---------ANAC46                              --------->AHL20(2)            --------->TOE2(3)                     ---                           --------->YAB1           <---------MYB52(1)            <---------ARR11(3)                    ------->TEIL               --------->GLK1(2)                  --------->ARR11(3) ->ZmHOX2a(1)    <---------YAB1              <---------ATHB12------>ZmHOX2a(1)    <---------GLK1(2) --YAB1<----------ID1    <---------YAB1    --------->YAB1<-----------GT1        <---------TOE2(3) ---   tcttcaaataccacaaactatgaaactattaataaatgagaaaactaataatccgttttattccttataaatccaagtttctaagattttcacacatatt  12587700                                                                                      <---------AHL20(2)                                                                                      --------->AHL20(2)                                                                                  --------->AHL20(2)                                                              <---------ANAC46    <---------AHL20(2)                                                  --------->ATHB12             <--------HAHB4                                                  --------->AHL20(2)           --------->ATHB51                                                  <---------ICU4               <---------ICU4                                                  --------->ATHB51            --------->ICU4                                                  <--------HAHB4              <---------YAB1                                                  -------->ATHB1            --------->YAB1                        <---------At4g35610       <---------AHL20(2)        <--------HAHB4          <---------AHL20(2)                     <---------ATHB51           <---------ICU4<---------AHL20(2)          --------->AHL20(2)   <---------ICU4    --------->ICU4            <---------YAB1 --------->AHL20(2)         --------->AHL20(2)<-------TEIL --------->YAB1   <---------ANAC46  --------->ICU4 --------->AHL20(1) ------>ANAC58          --------->At4g35610   <---------AHL20(2)         --------->YAB1   <---------AHL20(1) ------>ANAC58  <---------YAB1 --------->ATHB12  <---------ATHB12<---------ZAT14 <---------YAB1<-----   aagcaaacaaattaaaatttgattacagatgcatcatttcaatagtattcaattatttgtcttggagtatacaattcatcattattaattaataaaatgc  12587800                                                   <---------AHL20(2)                                             --------->AHL20(1)                                             <---------AHL20(1)                 <----------DOF2        <---------AHL20(2)           --------->AHL20(2)           --------->AHL20(2)           <---------ATHB51         <---------AHL20(2)       --------->ZAT6         --------->At5g28300           <---------AHL20(2)--------->GLK1(2)<---------AHL20(2)                   ----------->GT1          <---------AHL20(1) <---------ARR11(3)   <---------AHL20(2)         <------ZmHOX2a(1)         --------->YAB1      --------->ARR11(3)   --------->AHL20(2)       --------->MYB59 <------ZmHOX2a(1)          --------->RVE1(1)--------->AHL20(2)       --------->AHL20(2) --TEIL--------->AHL20(2) --------->AHL20(2) <---------AHL20(2)       <---------AHL20(2)   ataggaacttaaaataattctttttaaaaaaaatctatatttttaaataaaattttttttctaacacttggattaattaggaacactgtaaatatgtctt  12587900  Previous    Next  AGI:  At4g24270.1    Description:  RNA recognition motif (RRM)-containing protein. similar to crooked neck protein, putative / cell cycle protein, putative [Arabidopsis thaliana] (TAIR:AT5G45990.1); similar to hypothetical protein OsJ_024779 [Oryza sativa (japonica cultivar-group)] (GB:EAZ41296.1); similar to hypothetical protein OsI_026608 [Oryza sativa (indica cultivar-group)] (GB:EAZ05376.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60613.1); contains InterPro domain RNA-processing protein, HAT helix; (InterPro:IPR003107); contains InterPro domain Lsm interaction (InterPro:IPR008669); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504) Range:  from: 12581611    to: 12587394    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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