Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->At4g35610                        --------->ZAT2                        <---------At4g35610               --------->HSFC1(2) --------ICU4           <---------ZAT2         <-----------HVH21 ------->YAB1       --------->TOE2(3)          <----------DOF2 ------>ICU4        --------->TOE1(3)         --------->ANAC46      ----------->HVH21         <------ZmHOX2a(2) ---->YAB1       --------->ARR14(2)          --------->LBD16      <----------DOF2           --------- ----YAB1        <---------ARR14(2)          ------>NtERF2--------->HSFB2a(1)              <---------ETT(2) -->GT1      --------->LBD16               <---------LBD16<---------HSFC1(2)      <---------GLK1(2)   ataatgtccataagccgagaaacctcagcttggaactcaaacttctccgcgttactgcgaagcgtcttctttgacatcgactcagactctctgtcgatca  12555500                                               --------->LBD16                                              <---------ANAC58                                      --------->HSFB2a(1)                                      --------->HSFC1(2)                                            -                                      <---------HSFC1(2)             --------->TOE1(2)             <-                       --------->ANAC58       <---------ANAC46       --------->TOE2(2)             --                       --------->ANAC58       <---------ANAC58--------->ZAT6                    -----                   --------->CCA1(2)  <---------HSFB2a(1)    --------->ZAT14                <--------           <---------TOE2(3)        ---------->DOF2    --------->MYB52(1)                 --------->LBD16  <---------ARR14(2)   --------->ANAC46 --------->ARR11(3)   <---------ZAT14          --------->ARR14(2)  --------->ARR14(2)<-------TEIL--------->ANAC46     <---------MYB52(2)               --------->GLK1(2) >WOX13(1) --------->DAG2 --------->WOX13(1)<---------At5g28300    -------->P         <---------ARR14(2)   aacgaattcgaataaggcaagattcaagcaatccaagcgaaagttctaccgtgaaactaacagaacactaacctatgaactacatcggaatccgtcgata  12555600                                     <---------AGP1                                     --------->ARR14(2)                                     <---------ARR14(2)                                     --------->ARR11(3)                                     <---------ARR11(3)                                             -     ----------->HVH21         <---------AtMYB61                                                    -    <-----------HVH21       <----------DOF2                                     <----------DOF2    -- -------->AtMYB61      ------>ZmHOX2a(1)----------->GT1<---------GLK1(1)     <-----------GT1     ---- --------MYB55(2)      =======================HOX2a_HOX2a               <---------ANAC46   --------->YAB1 ------->MYB46(3)     --------->ANAC46 ------>ZmHOX2a(2)      --------->At4g35610         <---------YAB1 ----->DOF2      <-----------GT1   <---------MYB46(3)  --------->GLK1(1)<---------ANAC58 <---------TOE1(2) -ETT(2)--------->MYB46(3)  <---------DAG2        --------->At4g35610   <---------ANAC58------>ZmHOX2a(1)   aaccaccgtgaccaccaattttctcctcaacttttggtggatctgtaacatcatcggaactctcttctgcattcgcgtgtaactttcttcctatgataaa  12555700                                                --------->ARR11(3)                                         <---------ALFIN1                                    --------->ANAC58                                              ---                                    --------->ANAC58                                              <--                                    --------->ANAC46                                             ---- -------->AtMYB61<---------ICU4   ------>ZmHOX2a(1)                                            <----- ---------->RAV1(1)--------->At4g35610 ----------->RAV1(1)                                 --------->TOE2(3) ------->ANAC46  --------->YAB1  --------->TOE2(3)                                   --------------->AtSPL3 ----->ANAC46   --------->ICU4------->TEIL     <---------CCA1(2)             <-------TEIL------->TEIL   caccacagaaatatcgccatcatcagcatatgaatcctaagcaacacttatatctatctactcaaaatcaacacatatatacatcgaaacgtaccttgat  12555800                                                      ------>ZmHOX2a(1)                             <                                                      <---------YAB1                            <----                                                      ===================HOX2a_HOX2a            <----    >>>>>>>>>TBF1                               ------>ZmHOX2a(1)                               <---- ------>HSFB2a(2)                               =========================HOX2a_HOX2a         <------- -------HSFB2a(2)        <----------ID1     --------->ZAT18                                 <-------- -->ZmHOX2a(2)       ---------->DOF2        <---------ZAT18       ------>ZmHOX2a(2)         <-------- ----AGP1       ----------->GT1--------->MYB52(1)    --------->TOE2(3)------>NtERF2     <----------DOF2   ctggaagaagaaacagaagcgagaaaaggaacaaaacggacacgagcgtcctcttcctcattgttagatcggagccttggttctctcagtctttgctttc  12555900                                     --------->LBD16                                    ----------->GT1                                    <---------ANAC55(2)                                    <---------ANAC46                                    <---------ANAC55(1)                                   ------>ZmHOX2a(2)                        <---------ZAT2    <---------AHL20(2)   <---------ANAC46          <----------DOF2                        --------->ZAT2    <---------YAB1       <---------bZIP60(2)   <---------ZAT14                   *TSS --------->At4g35610                  <---------ZAT14      <---------ANAC58                 --------->ICU4    ====================HOX2a_HOX2a                <---------ANAC58                 <---------YAB1    <-------TEIL              --------->ZAT14      <---------ANAC46 --------P     --------->YAB1     <------ZmHOX2a(2)  --------->ATHB12             <---------ANAC55(2) -----ANAC58  --------->ICU4      =====================HOX2a_HOX2a               --------------->AtSPL8 -----ANAC46  <---------YAB1     --------->AGP1      -------->HAHB4          --------->MYB52(2) -----ANAC58--------->YAB1       <---------ARR14(2) <---------YAB1  --------->ZAT18  <---------ZAT18 ---DOF2   --------->ICU4        --------->ARR14(2) --------->ICU4  --------->ZAT14  --------->ZAT18 -ANAC58   <---------YAB1      ----------->ARR10    <---------ATHB12<---------ZAT14<---------ZAT18 -- -ANAC58 --------->YAB1 <---------At4g35610     <------ZmHOX2a(1)<---------ANAC46--------------->AtSPL3   gggttactcagtgatgatgatgattcagctcgatagatccgtatataataggaaatgattcagtgatgtgtgaactgtttagttgcgtacactttagttt  12556000                                          ----------->HVH21              ============================                                         ------>ZmHOX2a(2)               <--------P                                        <------ZmHOX2a(2)             --------->ALFIN1                                       --------->ARR14(2)            ------->MYC3                                       --------->AGP1                <-------MYC3                                       <---------AGP1                <-------MYC4                                       <---------ARR14(2)            ------->MYC2              <-------TEIL             <---------ARR11(3)            ------->MYC4           --------->At4g35610         --------->ARR11(3)            ------->PIF5           <---------At4g35610         <-----------ARR10             <-------PIF5          --------->MYB52(2)    <-------MYC3                         <-------MYC2        <---------MYB52(1)      >>>>>>>>>>ABI5                      <---------O2      <------MYB83              >>>>>>>>>>BZIP12                    --------->O2      <------MYB46(1)          --------->O2       ------>ZmHOX2a(2) ==============MYC_MYB      <---------MYB46(3)       <---------O2--------->MYB52(1)       <---------ANAC46    <---------WOX13(1)         --------->TGA1a   <------ZmHOX2a(2)  --------->bZIP60(2)   <------------CBF            <---------TGA1a  <---------ARR14(2)  --------->TGA1a  --------->ATHB12   --------->ATHB12 --------->At4g35610           <---------PIF3(3) <---------YAB1 <-----------TGA1------->MYC3    --------->ARR14(2)  <---------TGA1a ------>ZmHOX2a(1)  <---------YAB1    <---------CCA1(2)             --------->PIF3(3) --------->RAV1(2)  --------->ICU4<-----------HVH21              ---------------->PIF3(2)   ctcctgattggttagcttcgtcatgatttgccaacgtgtcagatctaacggatcgtattgtgagatagccacgtggtagttttgtattggagcaaggttt  12556100                <---------TGA1a                =====================MYC_MYB                <---------ANAC46      --------->ALFIN1                <---------bZIP60(2)   <------NtERF2                =============================================bZIP_DOF                --------->O2        <---------ANAC58                <---------O2        <---------ANAC58                --------->TGA1a     <---------bZIP60(2)                                             <             ----------->HVH21      <---------ANAC46                                                =        --------->ALFIN1       <---------MYB46(3)                                                   =      <---------bZIP60(2)      --------->ALFIN1                                                     -      <---------ANAC58        <---------AtMYB61                                                    <-      ===============================MYC_MYB                                                      ---      --------->O2            --------->ALFIN1                                                 <-----      <---------ANAC46       <-------GAMYB                    ---------->DOF2              --------->DOF5.7(2)      <---------O2       <---------LBD16                     --------->YAB1         --------->ARR11(3)      ====================bZIP_bZIP <---------O2            <---------YAB1       --------->At5g28300-      <---------TGA1a    <---------ANAC46             --------->AHL20(2)        ------->GAMYB<-------      <---------ANAC58<---------GLK1(1)               <---------AHL20(2)        ----------->GT1------   ----------->HVH21 <---------ARR14(2)              --------->AHL20(2)      --------->MYB52(1)<----- ===============MYC_MYB <---------LBD16           <----------DOF2    ----------->GT1<---------ARR11(3)   tgttcttgacgtggagcgacgtggatttcggggttgtggcgtggatggacgacttttaaattatcaaagtatgctaaatcaacggtgatattcgtttacg  12556200                           <---------AHL20(2)             ------>ZmHOX2a(2) ---------YAB1  --------->RAP2.6(3) ===================HOX2a_HOX2a ==================HOX2a_HOX2a -------->ICU4  --------->SPL7 --------MYB59<---------SPL7                                                                      --- -------------->AGL1 <----------DOF2                                                            ----- ----ANAC58--------->ARR14(2)                        --------->ATHB12                      <---------ARR14(2) ----->ZmHOX2a(1)<---------DEAR3(1)               <-----------GT1                       <---------ANAC46 --DOF5.7(2)<------ZmHOX2a(2)                    --------->AHL20(2)           <---------YAB1--------- --->ANAC55(2)----------->HVH21           ----------->HVH21                 <----------DOF2--------->ARR14(2) ----ANAC58<---------ARR14(2)       <-----------GT1 <---------YAB1<------ZmHOX2a(1)     --------->ETT(1)   tcctaattgggacgatcggacggctatatttagttgttttacatgtgacaaataactattggatattaggatgctatgcttttattgatgtcggatacaa  12556300                                                           <---------ANAC58                                                      <---------MYB52(1)                                                    <---------ANAC58                                                    <---------ANAC55(1)                                                    <---------ANAC58                                    <---------ANAC58<---------ANAC46                                    <---------ANAC58<---------ANAC55(2)                                  <---------YAB1    <---------YAB1                              -----                             --------->YAB1       <-----------GT1                              ------ -------->GT1               --------->ICU4  ----------->GT1<---------ANAC58                   ------- ----->DOF2                 <---------YAB1 <---------TOE2(3)              <---------MYB46(3)  ------- >CCA1(2)                 --------->YAB1   <---------TOE1(3)    <----------DOF2   ---------->DOF2   aagtaaaatgatgtttttctttgtacaacgatgattatgcttgccaaggttattacgtttggctggctttaatcggttgatggctaaagtctcgcctaaa  12556400  Previous    Next  AGI:  At4g24190.1    Description:  SHD (SHEPHERD); ATP binding. Identical to Endoplasmin homolog precursor (SHD) [Arabidopsis Thaliana] (GB:Q9STX5;GB:O22972;GB:Q56Y38;GB:Q8VY71); similar to HSP81-1 (HEAT SHOCK PROTEIN 81-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G52640.1); similar to hypothetical protein OsJ_021776 [Oryza sativa (japonica cultivar-group)] (GB:EAZ38293.1); similar to heat shock protein 90 [Oryza sativa] (GB:AAL79732.1); similar to Grp94 [Xerophyta viscosa] (GB:AAN34791.1); contains InterPro domain Molecular chaperone, heat shock protein, endoplasmin (InterPro:IPR015566); contains InterPro domain ATP-binding region, ATPase-like; Range:  from: 12551727    to: 12555919    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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