Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   ------->PIF5                                                <------MYB46(1)                                                --------->At4g35610                                                --------->ZAT2                                           --------->MYB46(2)                                           --------->MYB59                                         --------->ARR14(2)                                         <---------ARR14(2)                                         <--------P                                        <-----------HVH21                                       --------->LBD16                                      --------->LBD16                                     <---------LBD16 <---------ANAC58                                     <------NtERF2   <---------ANAC58                                    <-----------------AGL1                                          -                              --------->At4g35610<-------PIF5                              --------->ZAT18              ----------->HVH21<------NtERF2    <---------ZAT2                          <---------ANAC58       <---------MYB52(1)     --------->LBD16   <---------At4g35610                     --------->MYB52(2)     ----------->GT1         --------->DEAR3(1) <------MYB83                            <---------ANAC58  <---------ALFIN1           --------->RAP2.3(2)<---------ATERF1(1)                    <-------TEIL-- --------->ZAT14            --------->RAP2.3(1)--------->MYB111(1)                    --------->ARR14(2) <---------ZAT14        ----------->ARR10<---------MYB52(1) ------>ZmHOX2a(1)         <---------ARR14(2) ----->ZmHOX2a(1)     <--------P--------->DEAR3(1)   <---------ANAC46                <---------MYB52(1) -------->RAV1(2) --------------------->WRI1  <-----------RAV1(2)                -------->P<---------ZAT18   tcctgcaccgttacattcgacctggttagagccgcagtccccggttaggcaggtgccttgtcctgtgtctgagttgaagttgcaaccggttcgtgcccaa  12550900               <---------ZAT2           --------->ZAT2           --------->At4g35610           <---------ZAT2                                                       ------>NtERF2           --------->STY1(2)                                                    <---------At4g35610           <---------STY1(2)                                             <---------CCA1(2)     ----------->HVH21                     <---------LBD16          ------>NtERF2    <---------MYB59                       <---------LBD16        <---------ATERF1(1)   --------->O2<---------At4g35610       --------->MYB52(1)      <---------MYB46(3)   <---------O2<---------STY1(2)------->TEIL--------->LBD16      --------->ABI4(2)    --------->LBD16   ----------->RAV1(2)       <---------MYB52(2)                 <---------AtMYB61    --------->HSFB2a(2)   --------->ZAT2     <---------ANAC58  --------->AtMYB61       --------->ALFIN1<---------ATERF1(1)  ------>MYB46(1)     <---------ANAC58  <---------ALFIN1        <---------DEAR3(1)   <---------HSFB2a(2)  -------->P   --------->At4g35610     <---------MYB55(2)      <---------MYB52(1)   <---------LBD16  ------>MYB83 --------->ZAT2--------->MYB46(3)     --------->ZAT2 <---------PCF2   <---------------- -------->DEAR3(1)   <---------ZAT2    --------->MYB46(3)    <---------DEAR3(1)--------->DEAR3(1) ------->DEAR3(2)    --------->ZAT2--------->DOF5.7(2)       <---------DREB2C(2)--------->At4g35610   aaccgacctgaccagctagctggagcttggaacgaacgtgaaccaccgggaacgagctcgaagccggtggtgcctatatcgccgcttccggagttggaca  12551000                ---------->DOF2              --------->At5g28300          <---------ALFIN1         <---------REM1(2)        ----------->RAV1(1)        <---------ALFIN1                                          ------>MYB83       <---------TCP20                     <---------REM1(1)      ------>MYB46(1)      ------>NtERF2                       <---------YAB1      ------>MYB83     --------->ANAC46            <---------YAB1               ------>MYB46(1)     ------>NtERF2              <---------TOE2(3)             -------->P     --------->LBD16  <-------TEIL   <---------MYB46(3)      ------>ZmHOX2a(1)                  <----    --------->LBD16<---------At4g35610 <---------YAB1 <---------ALFIN1                          <----   <---------LBD16 --------->At4g35610<-------GAMYB <-----------HVH21                  --------->TOE2(3) -AGL1<-----------HVH21        <-----------GT1     --------->AtMYB61        <----------DOF2  <-------   aaattcccggccacacggtgaagctgcatcgatttacgatggttattgtagcaccatcacttcctaccaaatgcaatgctttagctatatgttaatattt  12551100                                                        ------->TEIL                                                     <---------ANAC55(2)                                                     <---------ANAC58                                                     <---------ANAC58                                                     --------->ANAC55(2)                                                     <---------ANAC55(1)                                                <---------ICU4                  <------ZmHOX2a(1)                                               ------->TEIL                     --------->YAB1                                          --------->CCA1(2)                   <---------TOE2(3)  <---------AHL20(2)                  <---------WOX13(1)--------->SPL7        <---------TOE1(3) -----AHL20(2)   --------->YAB1    <---------YAB1  <-----------GT1        --------->At4g35610 -------GT1     <-------TEIL ---------->DOF2<---------YAB1                <---------At4g35610 --ICU4 ----------->GT1    <---------YAB1--------->ARR11(1)            <------ZmHOX2a(1)   acattttatatagaaatattcatactgatatgaaagtatgatagatatgaatattacgtaccatggaagaagaggaagctaaggatgatgaaatagaatg  12551200                           <---------YAB1                         --------->YAB1                         <---------ICU4                        <---------YAB1                       --------->ARR11(3)                       <---------ARR11(3)                                                         <--                      --------->YAB1                                <----------DOF2            ------                     <---------YAB1                                 <---------DAG2            <------                     --------->ICU4                           --------->DAG2                  -------                  <---------MYB52(1)                 <---------AHL20(2)              <---------TOE2(3)                 <-------GAMYB             ---------->ID1    ---------->DOF2         <---------YAB1 -                <---------ZAT6       <---------YAB1 --------->AHL20(2) <-----------RAV1(1)   <-------             <------ZmHOX2a(1)     <---------AHL20(2)--------->AHL20(2)<---------AtMYB61     --------   agacatgagaatgaaggactgttatgatcatcactgtttatttttgtctctctattaaaaaaaaaaagtacttttggtggagaaattaagtttggaatat  12551300         *TSS       ---------->DOF2     --------->ANAC58     --------->ANAC58   --------->MYB52(1) ---------GT1                      ---------->DOF2                                                 -- --->KAN4(2)                   ---------->DOF2                                                    --- ---KAN4(1)                 <------ZmHOX2a(1)                                                     <-- -->KAN4(1)                <----------ID1                   ------->TEIL                          <-- -------->ANAC46          ----------->GT1         ----------->GT1                                 --- --KAN4(2)              ------------------------>ANAC81---------->DOF2  <-------TEIL   --------->WRKY18(1) -->TaMYB80           ---------->DOF2             <---------ZAT6   <-----------TBP    <-----------HVH21   tcacaaaacgaaagaccaagagagaaaagaggaaaaagaaagaccaagagtagagtttaaagcacctctatatatacgttgtctcaagggtcaagctcaa  12551400          ------>ZmHOX2a(2)        --------->ARR11(3)                                                                          -        <---------ARR11(3)                                                                         <- --------->ANAC55(2)                                                                               -- <---------ANAC55(2)                                                                           <----- ------->CCA1(2)                  <----------DOF2                            --------->ANAC58  <----- ------>ARR11(3)        <-----------GT1                                      --------->ANAC58  ------ -------ARR11(3)        <---------WRKY18(1)                         --------->ARR11(3)         ------ -------ARR14(2)       --------->WRKY38(1)   ---------->DOF2        <---------ARR11(3)         ------ ------>ARR14(2)---------->DOF2<---------ARR11(3)   --------->CCA1(2)      ---------->DOF2     <-----   gatatgtgatgatctcacaaaagtattgaccaatttcttttatgttttaaagtgatacaagataaaacaacatcttgaaaagccatgttatcacgaatat  12551500          <----------DOF2    ---------->DOF2 -------->ATHB12                                                                              ------- --------YAB1                                                                               <-------- ------->ICU4                                                                              <---------ANAC46 ----AHL20(2)                                                                        <---------AHL20(2) ----AHL20(1)                    <----------DOF2                                     --------->AHL20(2) --->AHL20(1)           <---------ARR11(3)                                           <---------AHL20(1) --->ARR11(3)           --------->ARR11(3)                                           --------->AHL20(1) --->AHL20(2)         <---------AHL20(2)   --------->GLK1(2)        --------->YAB1  <---------AHL20(2) ----ARR11(3)        --------->AHL20(2) <---------GLK1(2)      ---------->DOF2      --------->AHL20(2)   attgattaaagtctttttccatataaaatctatagctttacagattatctgtttgaaatttttgcaaaagtcataagttttcgaaaataaattttgtgga  12551600                                                                    <---------ARR11(3)                                                                    <---------ARR14(2)                                                                    --------->ARR14(2)                                                                    <---------ARR11(1)                                                                    --------->ARR11(3)                                                                   <---------CCA1(2)                                                                 --------------->AGL15                                                                 <---------------AGL15                                                                ----------------->AGL2                                                                ----------------->AGL3                                                           <---------TOE2(3)                               ----------------->AGL1      --------------->AtSPL3                              <------NtERF2                <---------------AtSPL8                          <------MYB83               <---------------AGL15                      --------->ATHB12               --------------->AGL15                     <---------YAB1                 =============================MADS_MADS                   <---------AtLEC2                 <-----------------AGL3 ---->GT1      --------->CCA1(2)       --------->At4g35610 --------------->AtSPL8 -LBD16 ----------->GT1   <------MYB46(1) ---------->DOF2  <---------YAB1              --------->GLK1(2)   aaataacaccgagtaatatatgcatgataggtggccaaattagctaaagagagtgcatattatggtaccatatctagataaactcggacaatctagataa  12551700                                                                            --------->HSFB2a(2)                                                                         ------>ZmHOX2a(2)                                                                       <---------ARR11(3)          <------ZmHOX2a(1)                                        <---------ANAC46      --------->At4g35610                                          <---------ANAC58         <--------      <---------At4g35610                                    --------->MYB59<---------HSFB2a(2)   ---      <---------ZAT2                                         <---------TOE1(3)              <--------      --------->ZAT2       ----------->GT1                   <---------TOE2(3)              <--------   --------->SPL7       ---------->DOF2         ---------->DOF2    <---------ANAC58        <---------ZAT18   actcggacagcaggaccattaatcttgaaagataaaaaactcatacattgaaaagaagaagtttaggttccttgatctctagaatgcaagtagtgcgttt  12551800  Previous    Next  AGI:  At4g24180.1    Description:  similar to thaumatin, putative [Arabidopsis thaliana] (TAIR:AT4G38660.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO48203.1); contains InterPro domain Thaumatin, pathogenesis-related (InterPro:IPR001938) Range:  from: 12550366    to: 12551309    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g24190.1    Description:  SHD (SHEPHERD); ATP binding. Identical to Endoplasmin homolog precursor (SHD) [Arabidopsis Thaliana] (GB:Q9STX5;GB:O22972;GB:Q56Y38;GB:Q8VY71); similar to HSP81-1 (HEAT SHOCK PROTEIN 81-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G52640.1); similar to hypothetical protein OsJ_021776 [Oryza sativa (japonica cultivar-group)] (GB:EAZ38293.1); similar to heat shock protein 90 [Oryza sativa] (GB:AAL79732.1); similar to Grp94 [Xerophyta viscosa] (GB:AAN34791.1); contains InterPro domain Molecular chaperone, heat shock protein, endoplasmin (InterPro:IPR015566); contains InterPro domain ATP-binding region, ATPase-like; Range:  from: 12551727    to: 12555919    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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