Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <------ZmHOX2a(1)                                                    --------->YAB1                 ------->MYC3                                          <----------DOF2<----------ID1            <-------MYC3                                   <---------At4g35610   ----------->GT1      <-----------GT1                   <-----------GT1 --------->At4g35610  <---------TOE2(3)    <-----------GT1      ---   taacttgttttgaaattgagtttaccattccaaaatcagcttaactttgtccaaaaataaggaaaaaatcagtctatatttaacacatgtattctttgta  12496700                                                                                 ---------->DOF2   <---------AHL20(2)                                                         --------->YAB1<--------  --------->AHL20(2)<----------ID1               >>>>>>>>>EIN3        <---------YAB1     <---------ARR11(3) ------>ICU4    <----------DOF2         <-----------GT1            <---------AHL20(2)  <---------At4g35610   aagattaaatctaaaattctttaagacaaacttgtgtttttttttctgtatacattgtttccctagtattttatgtttcatcgtaatgcagcatcttttg  12496800                                                             --------->AHL20(2)                                                             --------->AHL20(1)                                                           --------->AHL20(1)                  ------                                                        --------->AHL20(2)                     ------                                                       --------->AHL20(2)                 --------->AtMYB61                                                       --------->YAB1                     --------->ZAT6                                                    --------->YAB1                       --------->MYB46(3)                                                   <---------YAB1                       ------>MYB83                                                 --------->YAB1                         ------>MYB46(1)            <------MYB83                        <---------YAB1                          -------->P  -            <------MYB46(1)      <---------YAB1<---------ARR11(3)                      --------->MYB55(1)           <---------TOE1(2)  ------->TEIL     --------->ARR11(3)<-----------GT1      <---------MYB59           <---------TOE2(2)  <---------YAB1--------->AHL20(2)<---------YAB1          <---------MYB111(1) --DOF2   <--------P     --------->YAB1     --------->YAB1 <---------AHL20(1)--------->MYB46(3)------   ctaacctctctagtaggttttaaacaagaatgaatattgttgacaataatatcataataaaaatattatactgtatacaacaactagacctaccactacg  12496900                                           --------->AHL20(2)                                           <---------AHL20(2)                                          --------->AHL20(2)                                          --------->AHL20(1)                                      <---------AHL20(2)             <------------CBF                                      --------->AHL20(2)          ------>ZmHOX2a(2)         <--------                                   --------->YAB1                <------ZmHOX2a(2)          <-------- --------->ATHB12                  ----------->GT1         <-----------GT1    ---------->DOF2 --->ANAC58                       <---------YAB1     <---------AHL20(2) --------->YAB1   <-----------GT1 --->ANAC46                    --------->GLK1(2)     --------->AHL20(2)----------->GT1------->TEIL -------->ICU4             --------->YAB1 <---------AHL20(2)  --------->MYB46(3)     <---------CCA1(2) --->ANAC58       <---------------AtSPL8  <---------AHL20(1)<---------At5g28300--------->DAG2   <----   aaatgatttaaaacaagaagagagtacaagaagaatatgataaatttaattttaaaaaaattcaccgatcgtattgataaaaaagttgtatctacttttc  12497000                                                                           <---------ANAC46                                                                           <---------ANAC58                                                                           <---------ANAC58                                                                         --------->WRKY38(1)                                                                        --------->ATERF1(1)                                                                       <-------GAMYB                                                                       <---------ATERF1(1)                                                                      <---------ANAC58                                                                      <---------DEAR3(1)                                                                      <---------ANAC46                                                                      <---------ANAC58                                                                     --------->ATERF1(1)                                                                    <---------RAP2.3(1)                                                                    <---------ORA47(2)                                                                    ------>NtERF2                                                                    <---------ERF1                                                                    <---------DEAR4(2)                                                                   <---------DEAR3(1)                           >>>>>>>>>WRKY6                          <---------RAP2.3(2)                         --------->WRKY38(1)                       <---------RAP2.3(3)                     --------->DAG2                               <---------ABI4(1)                 --------->YAB1                                  <---------ATERF1(1)     <-----------GT1---------->DOF2                              *TSS<------NtERF2 <----------DOF2 --------->AHL20(2)                            <-----------RAV1(2)            ------- -DAG2        --------->WOX13(1)                            --------->ANAC46             <<<<<<<GRF7 --DOF2 --------->TOE2(3)--------->WRKY45    <---------YAB1 --------->ANAC58           ----------->HVH21 -------GT1 ------------>CBF   ----------->TBP              --------->ANAC58         ----------->RAV1(2)   tctctttttacctcatcaattaaaaagttgactataaataacacattactatttcttctctctcgccaggcggcgttgcctacaaaaacctgacaatcga  12497100                                                                     <---------ANAC58                                                                     <---------ANAC58                                                                     <---------ANAC46                                                                    --------->MYB52(2)                                                                <---------ANAC58                 --------->AHL20(2)                             <---------ANAC58                 --------->YAB1                                 --------->ANAC55(2)                 <---------AHL20(2)                             <---------ANAC55(2)              --------->YAB1       <---------ICU4          --------->WOX13(1)             <---------YAB1    <---------YAB1         --------->RAP2.6(3)                      ------           --------->YAB1     <---------At5g28300    --------->MYB52(1)        <--------------------- -->YAB1  <---------YAB1     <-----------GT1    <-----------------AGL1   <------------------------ANAC81   aacacagtttttctgataataatatagacatttaccattatgcccttctaactgaaaacggcaattacgttccttgttatttgttttcttccttctcctt  12497200                                                                             ----------->HVH21                                                                            <---------MYB52(1)                                                                            --------->At5g28300                      <---------AHL20(2)                                   --------->LBD16                     <---------AHL20(1)                                    <---------DEAR3(2)                     <---------AHL20(2)                                   --------->ATERF1(2)                 <---------AHL20(2)                                       <---------ATERF1(2)               <----------DOF2                                           <---------LBD16              <---------ANAC58                                           <---------ANAC46              <---------ANAC58                                           <------NtERF2           ---------->ID1  --------->YAB1     ---------->DOF2        <-----------HVH21         <-----------RAV1(1)        <---------LBD16                 ------->GAMYB    <----------DOF2  --------->AHL20(2) ---------->DOF2          --------->MYB52(1)<---------GLK1(2) >ZmHOX2a(1)  <---------ANAC46   <---------AHL20(2)    <---------ZAT14  <---------RAP2.3(1)       --- ---ANAC81 <---------RAP2.6(2)  --------->AHL20(2)     --------->ZAT14 <---------DEAR3(1)   <--------   ctgtttcttttttgtggctttaatttttttcatattaattcggaaagagaaagactcttcactcccataacagtcgccggtaacagaatcactccgatga  12497300                                 <---------ANAC58                                 <---------ANAC58                                --------->ABI4(2)                             <---------DEAR3(2)                             --------->LBD16                            --------->DEAR3(1)                            <---------ATERF1(2)                            --------->ATERF1(2)                            <---------DEAR3(1)                           <------NtERF2                           --------->ATERF1(1)                          --------->ABI4(1)                          ------>NtERF2                         --------->RRTF1(2)                         --------->RRTF1(3)                         --------->RAP2.3(3)                         <---------DEAR3(1)                         --------->ATERF1(2)                         --------->RAP2.3(2)                         <---------ATERF1(2)                         --------->DEAR3(1)                        --------->RAP2.3(1)                        --------->ERF1                        --------->ORA47(2)                        --------->DEAR3(2)                        --------->DEAR4(2)                        --------->RRTF1(1)                        <------NtERF2                        <---------ABI4(2)                        --------->ATERF1(1)                        --------->RAP2.6(1)                       <---------DEAR4(2)                       <---------RRTF1(1)                       <---------ATERF1(1)                       <---------RAP2.6(1)                       <---------ORA47(2)                       --------->ABI4(2)                       ------>NtERF2                       <---------ERF1                       <---------RAP2.3(1)                          <---------HSFC1(2)                      <---------RAP2.3(2)                           --------->HSFC1(2)                      --------->ANAC46                           <------ZmHOX2a(1)                      <---------DEAR3(1)                      ------>NtERF2                      --------->DEAR3(1)                     --------->DEAR3(1)                     --------->ATERF1(1)                   ------>NtERF2                     --------->RAP2.3(1)                   --------->ABI4(1)                     <------NtERF2                        --------->DEAR3(1)                   <---------DEAR3(1)                    --------->DEAR3(2)                  <---------HSFB2a(2)                    --------->MYB46(3)            --------->ARR11(3)<-------PIF5              <---------At5g28300            <---------ARR11(3)------->PIF5 <---------RAP2.6(2)--------->LBD16     ----------->GT1<---------ATERF1(1) --------->ARR14(2)--------->DREB2C(2)<---------ARR14(2) --->ZmHOX2a(2)   --------->HSFB2a(2)   <---------ARR14(2)------->GAMYB      --------->ARR14(2) -At4g35610<-----------GT1<---------ATERF1(1)       --------->ARR14(2) <---------At5g28300     <-----   tcgagactggtaaataccttctcggcgccgccggtgctagcggtttcggctctaaatccaccgccgaggaagttaccgagaactgcgaccttcgttccat  12497400                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    <                                                <---------MYB52(1)                                  <                   <---------ARR11(3)           <-----------HVH21                                   -                   --------->ARR11(3)          --------->LBD16       --------->GLK1(2)          <----              <-----------HVH21      <---------ANAC46               <---------GLK1(2)          ------           <---------LBD16           <---------ANAC58            <------ZmHOX2a(1)           <------MYB46(1)         <-----------GT1         --------->At4g35610            <---------At4g35610          <------MYB83   <---------MYB46(3)       ------>ZmHOX2a(1)<---------LBD16  <-----------RAV1(2)     <------MYB46(1) <---------At4g35610  <----------DOF2<---------ANAC58       <-----------HVH21         <------MYB83  < ------HVH21  <---------MYB52(1) <---------At4g35610        <-----------TGA1     --------->ATHB12----   cacagcggttatcaccggtgagttcttttcctctctgcttcgtgttttccggtgagtcgagtcgtcaggagattctaactagttgatttggtgataggtg  12497500          ------>ZmHOX2a(2)        <---------ARR14(2)     <------NtERF2   <---------DEAR3(1)   <---------ANAC46  --------->ALFIN1 <-----------HVH21 -------->bZIP60(1) ---------bZIP60(2) -------->TGA1a ---------TGA1a        <------NtERF2 ---------ANAC46     <---------DEAR3(1) -------->bZIP60(2) --------->ATERF1(1) ---------bZIP60(1)<---------ATERF1(1)                                <------ZmHOX2a(1)    --------->ANAC58 ---------O2      --------->ARR14(2)                            --------->LBD16            --------->ANAC58 -------->O2      ----------->HVH21                             ------>NtERF2            <------ZmHOX2a(1) ---TEIL--------->ARR14(2)   <---------GLK1(1)              <-----------GT1        <---------At4g35610 --->ALFIN1   <---------At4g35610                     <-------TEIL<---------ANAC46 <---------LBD16 ---------DEAR3(1)<---------ARR14(2)                 <--------P<---------LBD16     --------->At4g35610 ------->HVH21--------->At4g35610            <------ZmHOX2a(1)<---------LBD16---------->DOF2   ------   cgacgtcggggatcggagcggagacggcgagagttctggcgaaacgaggagcgaggttgatttttccggcgaggaatgtgaaagcagcggaggaagcaaa  12497600  Previous    Next  AGI:  At4g24050.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT1G64590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69477.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 12497065    to: 12500138    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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