Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              --------->YAB1                    <--------HAHB4                    --------->YAB1                    <--------ATHB1                    -------->HAHB4                    <---------ICU4                    --------->ATHB51                   --------->AHL20(2)                   <---------ATHB51                   --------->ICU4                 --------->YAB1              --------->TOE1(3)                      --------->ANAC58              <----------DOF2                        ----------->GT1      --------->AHL20(2) --------->ANAC55(2)         --------->ANAC58     --------->AHL20(1)  <---------ANAC55(2)        --------->DAG2             <---------HSFB2a(2)     <---------AHL20(1)--------->AHL20(2)          ---------->DOF2    --------->YAB1           <xxxxx    --------->AHL20(2) <-----------GT1        <---------------AGL15<---------ICU4             <xxxxxx -------->AHL20(2) <---------YAB1            <-----------------------TaNAC69(2)--------->HSFB2a(2) ---GT1       --------->TOE2(3)          <---------ICU4            --------->YAB1      ----------->GT1   tataaaatatatataactttaataattacataataacacctaaaaatgacataaaaagcaaaaatcccataatcatattttctacaaaattgtaaaacga  12486200                                                                           <-------TEIL                                                                    ----------->RAV1(1)                                                                   --------->REM1(1)                                                                  --------->ZAT14                                                                  <---------ZAT14                                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                               <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                               <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                               <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                               <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                              --------->ZAT6                                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                        <---------YAB1   <---------ARR14(2)                                                        <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                      <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                      <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                      <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                     <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                     <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                     <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <----------DOF2                                           <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                           --------->ALFIN1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                         <---------ANAC58--------->YAB1 --------->At4g35610                                         <xxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ARR14(2)                                         <---------ANAC46<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                         <---------ANAC58<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------GLK1(2)                              <xxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <xxxxxxxxxxxxxxxxsmallRNA(s)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  --------->LBD16<-----------HVH21   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <---------LBD16 <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->ARR14(2) <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<---------ZAT18 <xxxxxxxxxxxxxxxxsmallRNA(se3)             <---------ARR14(2) <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxsmallRNA(se3)             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   --------->ZAT18<xxxxxxxxxxxxxxxxxsmallRNA(si3)             <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   ----------->GT1--------->ANAC46  *TSS     ----------            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) <---------------AtSPL8<-----------RAV1(2) --------->ANAC58          --------->ANAC46   <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <---------LBD16    <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)  <----------DOF2--------->LBD16<xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->TOE2(3)--------->ANAC46<xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ANAC46       --------->ANAC58 xxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)----- xxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<----   aaacctttatctgcgcatccagggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacaccagatgcgctatttctgacaaacaata  12486300                                                                              <----------DOF2                                                      <---------AHL20(2)  ------>ZmHOX2a(2)                                                      --------->AHL20(2) <------ZmHOX2a(2)                                                      <---------AHL20(1)--------->ARR14(3)                                                      <---------ARR11(3)--------->ARR11(3)                                                      --------->ARR11(3)<---------ARR14(3)                                                     *TSS               <---------ARR11(3)                                                =====================HOX2a_HOX2a  <---------ANAC58  -                                                ------>ZmHOX2a(1)       <---------ARR14(2)     ------                                                ================================HOX2a_HOX2a    <-----    <-----------TBP                             =================================HOX2a_HOX2a <------- -->CBF                   <-----------GT1<---------MYB52(1)          <---------TOE1(2) ---------->ID1 ---->YAB1        <-----------GT1       --------->TOE2(3)     ------>ZmHOX2a(2)   <---------ANAC58  - -----ICU4        <---------AHL20(2)   ----------->GT1--------->AHL20(1)--------->ARR14(2)   --------   atcgttttatatacttatatttacattttctcggttcaaaatcgttattcctgtaatatattgatccatcccacgatcttcttttcttggtcgtcttctg  12486400                                                                                              <------                                                                                              <------                                                                                              -------                                                                                              <------                                                                                              -------                                                                                           <---------MYB52(1)                                                                                        --------->RAP2.3(1)                                                                                       ------>NtERF2                                                                                      --------->bZIP60(2)                                                                                      --------->ANAC46             <---------HSFB2a(2)                    --------->DOF5.7(2)               --------->ANAC58           <------ZmHOX2a(2)                        <---------MYB52(1)                --------->ANAC58          <---------ARR14(2)                       --------->TOE1(3)                --------->AtMYB61          --------->ARR14(2)  --------->ANAC58     --------->TOE2(3)           <------ZmHOX2a(2) -------->ANAC58            ---------->DOF2--------->At4g35610                --------->ARR11(3) --->HSFB2a(2)        --------->AtLEC2   <---------ALFIN1                 ---------->DOF2 ------>NtERF2 ----HSFB2a(2)   --------->ANAC58      <-----------HVH21              --------->AtLEC2--------->O2 -- --At4g35610 --------->HSFB2a(2)     --------->At4g35610             --------------------->WRI1    <- -------->ANAC58 --------->ANAC58 --------->At4g35610         ------>NtERF2   <---------ARR11(3)   <- ->At4g35610------>ZmHOX2a(2) --------->ANAC58   <---------TOE1(2)  <---------AtLEC2<---------ALFIN1<   aaacgctaatcggatccagaagccatggacaaaagcatcagcatcacctccaacgttagcacgacgacttccatggaaaagatcgaccacgccgctagct  12486500          --------->YAB1          --------->TOE2(3)     <---------ZAT18                            ----------->RAV1(2)    --------->ANAC46                           <---------RAP2.3(1)                             ------   --------->At4g35610                         <---------ATERF1(1)                          ------>NtERF2 ---STY1(2)--------->At5g28300   ------>MYB83  ------>NtERF2                            --------->DEAR3(1) ---At4g35610   --------->ARR14(2)           ------>NtERF2                            ------>NtERF2 -->ZAT2  ----------->GT1        ------>MYB46(1)--------->ATERF1(1)                ------>NtERF2    - ---ZAT2  ------->GAMYB       --------->At4g35610   <---------ANAC46              --------->DEAR3(1)- -->At4g35610   <-----------GT1--------->DEAR3(1) <---------ATERF1(1)    ----------->TGA1------>NtERF2 ------->ARR14(2)             <---------At4g35610--------->DEAR3(1)      ----------->HVH21 --------->DEAR3(1) --------ARR14(2)           <-----------GT1 <---------ATERF1(1)        --------->YAB1--------->DEAR3(1) ----------HVH21<---------ARR14(2) --------------------->WRI1   <---------ALFIN1------>NtERF2 ------- ------ZmHOX2a(2)     <----------DOF2   --------->SPL7  --------->WOX13(1)     --------->DEAR3(1)   <   ggatcagcgcaaccgtaatatccgctttcttcacctccctcgaacgctgcgcctgcgtcaatctctccacctctcatgacgacgacgacgacgacgacga  12486600                                    ------>ZmHOX2a(1)                               <---------At4g35610                               ------>NtERF2                              <---------ATERF1(1)                                           <--------                              --------->DEAR3(1)                                          <---------AHL20(2)           <-----------HVH21  <---------ALFIN1                                            --------->AHL20(2)           --------->ORA47(1)--------->RAP2.3(1)                                       <---------AHL20(2)       <---------ALFIN1     --------->LBD16          <---------MYB52(1)           --------->AHL20(2) >NtERF2  --------->DEAR3(1)------>NtERF2    --------->ANAC58                <---------MYB52(1)   <-- -------->ARR14(2)          <---------ATERF1(1)  ------>NtERF2              ----------->GT1<---------AHL20(2) ------>TEIL               --------->DEAR3(1)--------->ANAC46        <-----------GT1  <---------AHL20(2) -->DEAR3(1)   ------>ZmHOX2a(1)<---------ALFIN1<---------ALFIN1    <-----------GT1   --------->AHL20(2) ---------ARR14(2)         --------->ANAC46  --------->ANAC58  <---------MYB52(1) <---------AHL20(2)   cgaatcccatcaccgtcctctcgctctctccgccgctcctcatccaaacgacaccgtttagctctgttttttaacctctggtaatttataaatttaatcc  12486700                                  ----------->GT1             --------->YAB1    <---------ARR14(2)            <---------YAB1     --------->ARR14(2)     ---------->ID1       <---------ANAC46                                                       <---   <---------MYB46(3)   <------MYB83                  <---------------AtSPL3                    <----   --------->MYB52(2)  <---------MYB46(3)    --------->ATHB12                                 <------  <---------TOE1(2)    <---------AtMYB61  <---------ANAC58                                    <------ <---------MYB52(1)  <------------CBF     <---------ANAC58                      <---------AtLEC2>>>>> ---GT1  <----------DOF2<------MYB46(1) --------->ARR11(3)          <---------ANAC46      <---------GLK1(2) -------TOE1(2)     --------->ATHB12    <---------AHL20(2)------->TEIL         <-------TEIL--------->GLK1(2)   ctcgtttgtttcttttgataatcgattggtgtggatttgtaatttcttgatttgaaaatgtatgtctactgtgtgtaaatgtgcatgtctcagaatttga  12486800           <---------At4g35610           --------->At4g35610          <---------ARR14(2)          --------->ARR14(2)     <---------ANAC58     <---------AtLEC2     <---------ANAC55(1)     <---------ANAC58                                                                         <------MYB46(1)     <---------ANAC46                                                                         <------MYB83 ------WOX13(1)    ----------->TBP                                                        --------->ARR14(2) --------CBF       --------->AHL20(2)                                         --------->ARR11(3) ---YAB1  ------->TEIL <---------AHL20(2)        --------->YAB1          --------->AHL20(2)  -------- ---AHL20(2)     <----------DOF2               ------->TEIL          ----------->GT1      <---------ARR14(2) >>>>ARR2<---------CCA1(2)             --------->YAB1              <------------CBF       --------->GLK1(2)   ttgttttgcgtgtatctgactttatatacttgggtttaaaatcagaatgaatcatcgtttttgcatttacattgaaaaaatatcaagaagagaatttggt  12486900                                                      <---------DAG2   --------->ATHB12                                   <----------DOF2                              --  <------ZmHOX2a(2)                                  <---------DAG2                              ---- <---------ARR11(3)               <---------YAB1  <<<<<<<<<GT-1           ------>ZmHOX2a(2)    <----- --------->ARR11(3)               ------------>CBF<-----------GT1        <---------GLK1(1) <---------AHL20(2) ->MYB59                  <----------DOF2   --------->HSFB2a(2)          --------->GLK1(1)--------->YAB1   agagatcatttgtttgttttgaagttttcttttgtgatcaatgtttctcgatttacctttttcatttcatttctgatctctgcgttcaactattaaaacc  12487000                                              <-----------HVH21                                             ------>ZmHOX2a(1)                                           ------>ZmHOX2a(2)                                       <-                                          <------ZmHOX2a(2)                                        --                                          --------->GLK1(2)                                        --                                         --------->ARR11(3)                                        <-                                         <---------ARR11(3)                                  <-------                                         --------->ARR14(2)                                  --------                                         --------->AGP1                                      --------                                         <---------ARR14(2)                               --------->ALFIN1 ------->ARR14(2)                       <---------GLK1(1)                    <---------YAB1 <-------- ----->LBD16       <---------AHL20(2)   --------->GLK1(1)                    --------->ICU4 <-------- ----LBD16  <-------TEIL          <-----------HVH21<----------DOF2    ---------->DOF2   <-----------RAV1(1)   ggaacagcatcagtttcatgttttattttgtcaatgtgtcagagatcctgtcactttagatttcatagtttcaaaagtgattatttgatcatgtgggtcc  12487100  Previous    Next  AGI:  At4g24025.1    Description:  pre-tRNA. tRNA-Gly (anticodon: CCC) Range:  from: 12486212    to: 12486282    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g24030.1    Description:  unknown protein Range:  from: 12486257    to: 12486643    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g24026.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10810.1); similar to unknown [Populus trichocarpa] (GB:ABK94041.1) Range:  from: 12486353    to: 12486865    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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