Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <-----                                                                                              <------                                                                                            <--------ATHB1                                                                                            ---------                                                                                            -------->ATHB1                                                                                            ---------                                                                --------->AHL20(2)          <--------                                    <---------DAG2          <---------AHL20(2)              ---------                            <-----------ARR10              <---------AHL20(2)              --------->ICU4                          ---------->DOF2             <----------DOF2                      <---------YAB1                       --------->ANAC58        <---------ANAC58 <---------AHL20(2) <------ZmHOX2a(1)    <----------DOF2    --------->ANAC58        <---------ANAC58--------->AHL20(2)<---------TOE2(3) --->AHL20(2)--------->AHL20(2)     <----------DOF2<---------ARR11(3)       --------->DAG2 <---------ATHB51   aaactgatttttggtttaaatagagaagcaaagctacgcttttttttttgctagctctttttttatttaatcaaacaaaaattgaggaaaacaattattg  12450900                                                                                                 <---                                                                                                 <---                                                                                                -----     --------->ANAC58                                                                   --------->HSFB2a(2)     --------->ANAC58                                                                   <---------HSFC1(1) ------RAV1(1)          --------->AHL20(2)                                              <---------HSFB2a(2) ---YAB1                <---------AHL20(2)                                              ------>ZmHOX2a(1) >ATHB51            <---------AHL20(2)     <---------AHL20(2)                 --------->ANAC58  <---- >ATHB12           <---------AHL20(1)      --------->AHL20(2)    <----------DOF2        --------->HSFC1(1) -ICU4          --------->YAB1  <-----------GT1        <-----------GT1     <---------ATHB12   >>>>>>> >YAB1 <---------ICU4 <---------AHL20(2)  --------->AHL20(2)  <-----------GT1 --------->ANAC58>>>>>>>   ttgtgctaagcatttctatcatatatttttttataaacaatacatttaatttcaaaataactttctactttcttcaaatcaagctatttcctagaaattt  12451000                                                                                      --------->ANAC46                                                                               <---------YAB1                                                                             <--------HAHB4      ----                                                                             --------->YAB1      ----                                                                            <---------YAB1       ---- ---MYB46(1)                                       ----------->GT1      <---------ANAC58   --------->DAG2 ---MYB83                                   <-----------GT1             <---------ANAC46  --------->DAG2 ---->MYB59                            <------ZmHOX2a(1)                <---------ANAC58 ---------->DOF2 -----------AtSPL8                   --------->ANAC58           <---------TOE2(3)     --------->ANAC58 >>SARD1                             --------->ANAC58         --------->AHL20(2)      --------->ANAC58 >>CBP60g                      --------->ZAT14<---------YAB1  <---------AHL20(2)--------->AHL20(2)---   ggtactgtctggataacaacatgtcttagaaagtatagtaaggaatttacaattggttatacaattaatgtatagcgtattattatatacgaaaaggtgt  12451100                                  --------->YAB1                               <---------AHL20(2)                              --------->AHL20(2)                  <---------AHL20(2)                 --------->AHL20(2)   ---------->DOF2                                  --------->ALFIN1           <-------TEIL      <---------YAB1                                    --------->MYB52(1) ------------->AGL1       --------->AHL20(2)                               --------->ANAC58 ------------->AGL2       <---------AHL20(1)              ----------->GT1  --------->ANAC58 ------------->AGL3       --------->AHL20(1)      ---------->DOF2        ---------->DOF2        ----- ------------>AGL15       <---------AHL20(2) ----------->GT1           --------->CCA1(2)     --------   ccaattttagacatacatataaaatcaatttattaaaaataaaagtattgaaaaaagagagagtgaaacggagataaaagcaaacggaggtgttaactta  12451200                                       <---------ANAC46                                     ------->GAMYB                                  --------->MYB52(1)                                  <-----------GT1            <---------ANAC46                             <---------ANAC58       <---------YAB1                             <---------ANAC58    <---------YAB1                             <---------ANAC46   <---------TOE2(3)                      *TSS   -------                          <----------DOF2     ----------->HVH21                      --------->ZAT14 ----->DOF2            --------->GLK1(2)<-------GAMYB--------->YAB1 <----------ID1   <---------ZAT14 ->TOE2(3)            <---------GLK1(2)<---------DEAR3(1) ----------->TGA1    ---------->DOF2 <------   aagacgggagagaagcgagtgagagattctttcttgtaacggcgttgtttgacgattatagtgacgaagagagacaaaaaaaaagagtttagtcttcttt  12451300                                                                                                 ----                                                                                                -----                                                                                                <----                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                  <---------ANAC58                                                                                  --------->ANAC55(2)                                                                                  <---------ANAC55(2)                                                                                  <---------ANAC58                                                                                  <---------ANAC46                                                                              <-------GAMYB    ------                                                                             <---------ANAC58  <-----                                                                             <---------ANAC46  ------                               --------->ANAC55(2)                           <---------ANAC58 <------                              <---------LBD16                           <------ZmHOX2a(1)     <------                             <-----------GT1                            =============================                           <----------DOF2                          =================================                     <---------ZAT2                                 <------ZmHOX2a(1)  <---------YAB1 -------->AGL15      --------->ZAT2                                 ================================= ----DOF2           --------->GLK1(2)----------->GT1------------>AtMYB77=============================   gtttgggagacgaagacgatagaagctggttttacgggagagaaattagagaggttacagttacagagcaggaaggattgcgttgcgttacgattcagat  12451400            <---------ANAC58        <-------GAMYB       ------>ZmHOX2a(2)       <---------MYB46(3) -->ZmHOX2a(2) ---->GLK1(1) -----GLK1(1) --ZmHOX2a(2) --->ARR14(2) ----ARR11(3)                                                                                   ----- ----ARR14(2)                                 --------->ANAC55(2)          --------->AHL20(2)  <----- --->AGP1   <---------ANAC58                  --------->ANAC58             <---------AHL20(2)-------- ----AGP1<---------MYB52(1)                   <---------ANAC55(2)         --------->AHL20(2) -------- --->ARR11(3)                                 --------->ANAC58            <---------AHL20(2) <------- ---At4g35610                            --------->REM1(2)        <<<<<<<<<TBF1              -------- ---CCA1(2)--------->MYB52(2)           --------->ALFIN1    <---------HSFB2a(1)            <--------- ==HOX2a_HOX2a                         <-------MYC3         --------->HSFB2a(1)       <----------DOF2 ==HOX2a_HOX2a                  --------->ANAC58            --------->HSFC1(2)        <---------DAG2 ===HOX2a_HOX2a    <-------TEIL --------->ANAC58            <---------HSFC1(2)    ------>ZmHOX2a(1) ===HOX2a_HOX2a   --------->AtLEC2     ------->MYC3    --------->ANAC46   <---------AHL20(1) --------   ctctctcgatcgttacttacatgcattagagaacaagaaaacgtggagacggaatccaagggaccttcttcttcaatttaattcctcactttattacgca  12451500     <---------AHL20(2)        --------->ARR14(2)                                               -----   <----------DOF2             <---------ARR14(2)                                             ------- -->TEIL                      <---------MYB52(1)                                              ------- ----ALFIN1                  --------->LBD16                               <---------WOX13(1) <------ ->ANAC58                  <---------LBD16                                 <---------ANAC46   ------- ->ANAC58                 --------->MYB52(1)                            ----------->HVH21     <------ --ANAC55(2)           --------->ZAT2                                 <---------ANAC58  <---------AHL20(2) ->ANAC55(2)           <---------At4g35610                            <---------ANAC58 --------->AHL20(2) --GT1                 --------->At4g35610                         <---------AtMYB61 --------->ARR11(3) ->ANAC46              <---------ZAT2 <---------At4g35610   <---------ANAC46         <---------ARR11(3)   cccttcttttattttcgactgtttcagcttccggttcttcatcggagagagatagagagactgtgtgttttggtgtgactgatagaagatttaatcagct  12451600                                                                    --------->LBD16                                                                   <---------ATERF1(2)                                                                   --------->ATERF1(2)                                                                  <---------LBD16                                                                 --------->MYB52(1)            <---------AtMYB61                               <------NtERF2            <---------DEAR3(1)                             ----------->RAV1(1)           <------NtERF2                                   ------>NtERF2          --------->LBD16                                 ----------->HVH21     <---------ARR14(2)                                   <---------ETT(2)                     ------ ------>HVH21                                             --------->DEAR3(1)                  ------- -->ZAT2 <---------ANAC46                                --------->RAP2.3(1)                <-------- ---->RAV1(2)                        ---------->ID1     ------>NtERF2                       <-------- ---At4g35610               --------->LBD16             --------->LBD16             <---------ZAT18 -->At4g35610             <---------LBD16              <---------LBD16       --------->MYB52(1)<----- ---ZAT2<---------LBD16 <---------WRKY18(1)           <---------LBD16        <-----------GT1<--------   gatggcaaatcgcggaggtgagaaattgaccggagttttgtttttttcttcaattttccggcgacattaccggcgaaattaaccggtgtacattgtgtgg  12451700                  <---------TOE2(1)                  <---------TOE1(1)                 --------->SPL7             <---------PCF5           <---------ARR14(2)               <---------PCF2    --------->At4g35610                    ----------->HVH21    ----------->GT1                       --------->LBD16  <-----------RAV1(2)                   <---------LBD16 ----->GT1 --------->ARR14(2)           --------->LBD16                               <---------AHL20(2) -->ALFIN1 <---------ARR11(3)         <---------LBD16                         ----------->GT1 -ANAC46   --------->GLK1(2)      --------->ICU4                          ---------->DOF2    ------>ZmHOX2a(1) -ANAC58  <---------GLK1(1) --------->HSFB2a(2)                         --------->ANAC58    --------- ----ANAC46--------->ARR11(3)     <---------ATHB51                      --------->ANAC58 <-----------GT1 -ANAC58  --------->RVE1(1) <---------HSFB2a(2)                ------>ZmHOX2a(1)    <---------YAB1<--   tgaaacaggtgaatatctgtacgatgagttatggaaattatgcgcgggacctcttgttgatgttcctcaagctcaagaaagagtttattattttcctcaa  12451800  Previous    Next  AGI:  At4g23980.1    Description:  ARF9 (AUXIN RESPONSE FACTOR 9); transcription factor. Identical to Auxin response factor 9 (ARF9) [Arabidopsis Thaliana] (GB:Q9XED8;GB:O22991); similar to ARF11 (AUXIN RESPONSE FACTOR 11), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46530.3); similar to ARF11 (AUXIN RESPONSE FACTOR 11), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69513.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311); contains InterPro domain Aux/IAA-ARF-dimerisation; (InterPro:IPR011525); contains Range:  from: 12451287    to: 12455024    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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