Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               --------->DAG2                                        =====================================HOX2a_HOX2a                                        ===========================HOX2a_HOX2a           ------>ZmHOX2a(2)            <------ZmHOX2a(2)         --------->ARR11(3)         <--------P   <---------YAB1     --------->At4g35610   ---------->DOF2                    <---------ZAT18   ---- <-----------GT1      --------->ZAT14  <---------AGP1                          <---------ZAT14 ------ --------->YAB1       <---------ZAT14<-------TEIL                     <------ZmHOX2a(1)  <----------DOF2 ---->GT1<---------ARR11(3)       <---------ANAC46          <------ZmHOX2a(1)  --------->ZAT14 ------   taataacaattgatcttcttaatctgcagaggcatgaggtagatcagaaagtagaacacagaggagggaagaggaagacactggactctcgctttgcaag  12429200                                                                                            ---------                                                                                           <---------ATHB12                                                                                      ---------------                                                                                    <-----------GT1                                                                                 <---------GLK1(2)                                                                                 <---------ARR14(3)                                                                                 <---------ARR14(2)                                                                                 <-----------ARR10                                                                                 --------->ARR14(3)      --------->At4g35610                                                        --------->ARR11(3) ---------->DOF2        --------->MYB46(3)                                       --------->ARR14(2) ----->YAB1           <-----------GT1<---------At5g28300                       ----------->ARR10 --->ANAC58      <---------YAB1     <-----------GT1                        <-----------RAV1(2) --->ANAC58   ----------->TGA1   <---------ZAT6           ----------------->AGL1 <---------ARR11(3)--   catgaaagagcagagaatgacgattaacaactatggtgttacagtgcaagttccaagattaccaccatgggttagagccagaagattttcccaatgagaa  12429300            --------->ANAC55(2)                    --------->GLK1(2)   --------->ANAC58            <---------ANAC46                       --------->ARR11(3)  --------->ANAC46  ---------->DOF2<---------MYB46(3)               <---------GLK1(2)    --------->ANAC58 >YAB1 <----------DOF2                <----------DOF2             --------->ZAT6              ------- -->AGL1   <---------LBD16           <---------ANAC58       --------->ANAC58                 -------- ------->TOE2(3)<--------P           <---------ANAC58       --------->ANAC58        <----------DOF2   accacaaagcttttacgggttgttccagtttagaatttggcttttgggtttagaatcttgttaagcaaacactaagcaatgcaattcttttgtaaacata  12429400               ---------->DOF2                          <---------ARR14(2)  --------->ANAC55(2)  <----------DOF2      <---------AHL20(2)               --------->ARR14(2)  <---------ANAC55(2) -->ARR11(3) <---------YAB1                --------->AHL20(2)          --------->WOX13(1)           - ->YAB1    --------->YAB1              <-------TEIL    --------->GLK1(1)  --------->AHL20(2)      <--   ttgacttttagtatcatgaaagaattttttttgagtcttggttcattatatagtcgcatttccacatttctgtcaattacatgtttgcctctaagtgagt  12429500                                                          ------>ZmHOX2a(1)                  --------                                                <------ZmHOX2a(1)                            <-------                                              <---------TOE2(3)                             <--------             ---------->DOF2                  <---------TOE1(3)                           --------->AHL20(2)  <------NtERF2                        <-----------------AG                               <---------AHL20(2) -------->ANAC46           xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    <---------REM1(1) -------ANAC55(2)   <-----------HVH21  <-----------------AGL1                    ----------->GT1   acgcgtcgtcaagaagaaagcctatcagccaagtatgtcttaactcttaaggaatgcttcctgtataatctagacaaatagagttgtaacatttaaatct  12429600          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->ALFIN1          <---------REM1(1)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)         xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxx>smallRNA(fl3)         xxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         xxxxxxxxxxxxxxxx>smallRNA(s)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)         xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)         *TSS         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         xxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxx>smallRNA(fl3)         xxxxxxxxxxxxxxxxx>smallRNA(fl3)         xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         ------->TEIL         xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         --------->LBD16         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         --------->ANAC58         xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     <---------ALFIN1         xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                         --------->ANAC46         xxxxxxxxxxxxxxx>smallRNA(le3)                         xxxxxxxxxxxxxxxx>smallRNA(s)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxx>smallRNA(s)         xxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <-------PIF5  --------->ANAC58         xxxxxxxxxxxxxxxxx>smallRNA(se3)              ------->PIF5 <---------LBD16         xxxxxxxxxxxxxxxxxxx>smallRNA(l2)           <---------LBD16--------->ANAC46         xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)         xxxxxxxxxxxxxxxx>smallRNA(s)         xxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxx>smallRNA(s)        <---------ANAC46    --------->ZAT18    xxxxxxxxxxxxxxxx>smallRNA(se3)      <---------ANAC46      <---------ZAT18   xxxxxxxxxxxxxxx>smallRNA(le3)     <---------LBD16     xxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->ALFIN1     ---------->DOF2      xxxxxxxxxxxxxxxx>smallRNA(s)   xxxxxxxxxxxxxxxx>smallRNA(s)               xxxxxxxxxxxxxxxx>smallRNA(si3)  <------------CBF   xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxx>smallRNA(si3) ->ARR11(3)     xxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(le3) --ARR11(3)   <---------At4g35610   xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------ALFIN1              < -CCA1(2)xxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                <-----   tcaaaattgggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccaattttgttttttgttattt  12429700            <---------ANAC58            <---------ANAC46            <---------ANAC58         <---------MYB52(1)       <---------ANAC58                             --------->ANAC58       <---------ANAC58                        <---------GLK1(2) ------->TEIL                                --------->ANAC58 --------->ARR14(2)                  <-----------RAV1(2)                                       ------ <---------ARR14(2)        <------NtERF2     --------->ANAC58                               --------- <---------ARR11(3) <-----------RAV1(1)    ---------->DOF2<----------DOF2        <---------DAG2<----- ---------CCA1(2)   =============================RAV--------->ANAC46             <----------DOF2 ------GT1 --------->MYB52(2)  <---------MYB52(1)   --------->ANAC58   ------>ZmHOX2a(1)    <--------   ctgtatcttccgttccttgtatatgtggcctcagttaattcaggcgaaagaaactcgcaactttctctgtttcctccattccactttttcgaagatgtaa  12429800                                  ----------->GT1                               <----------DOF2                              ------>ZmHOX2a(2)                        --------->YAB1                        <---------ICU4                    <---------AHL20(1)                    <---------AHL20(2)                                   --------->AHL20(2)                    --------->AHL20(2)                                  <---------ARR11(3)   <---------AHL20(2)  --------->ICU4        <---------ANAC46           <---------AHL20(1)   <-----------GT1  --------->AHL20(1) --------->ICU4                   --------->AHL20(1) ->TEIL    <------ZmHOX2a(1)--------->ARR11(3)                      --------->YAB1 -->GT1  <---------TOE1(3)  <---------ARR11(3)                    ------>MYB46(1) ------GT1 ==========================HOX2a_HOX2a                  ------>MYB83<---------TOE2(3)   <-- -REM1(1)<---------TOE2(3)<---------YAB1<---------ICU4          <---------MYB59<---------YAB1 <------   ctaatttacttaaggaaaacaataaattatgatctttagtaaatatggcctattccaaaaactgaaccaaacaaaatatttatgtttgattttgagttaa  12429900                                                                       <----------DOF2                                                   ------>MYB46(1)  <---------ARR11(3)                     <---------ALFIN1              ------>MYB83<---------AHL20(2)      <---------AHL20(1)             ---------->DOF2           <---------YAB1      --------->AHL20(2)   ---------->DOF2       <---------MYB111(1)--------->ARR11(3)      <---------AHL20(2) <---------HSFB2a(2)     <---------MYB59--------->YAB1                    <--     --------->AHL20(2)  --------->HSFB2a(2)     <---------MYB46(2)--------->YAB1                 <-- ---------GT1 <-----------GT1    <---------At4g35610           --------->AHL20(2)--------->ARR11(3)-- ---AHL20(2) <---------AHL20(2)  --------->At4g35610       --------->YAB1      <---------AHL20(2) ---   ttacacattaaatttttaatcacacacccagaagcagctaaaagacttcgacctaactccatcatataattatcttttgaatttatcttgaagaccatat  12430000  <---------ICU4  -------->HAHB4  --------->YAB1                                   --------->YAB1 --------->ICU4                                    <---------ICU4 <---------ATHB51                                 <---------ATHB12 <---------YAB1                                 ------>MYB46(1) -------YAB1                                    ------>MYB83       <-----------RAV1(1) -------AHL20(2)                          ----------->HVH21 <----------DOF2            --------->ANAC58 ------->YAB1                           <---------ZAT6 <---------ARR11(3)              --------->ANAC46 ------>AHL20(2)             <----------DOF2  <---------MYB59  --------->YAB1          --------->ANAC58   ataattatggcccaaagactccaaactgactctttgtttttagtgtgacctaatcaatatcactttcatatgttgtccaaaaaaactatacgacatacaa  12430100  Previous    Next  AGI:  At4g23910.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10970.4); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10970.3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10970.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05314.1) Range:  from: 12426570    to: 12429382    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g23915.1    Description:  pre-tRNA. tRNA-Ala (anticodon: CGC) Range:  from: 12429609    to: 12429681    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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