Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                                <----                                                                                                <----                                                                                            ------>ZmHOX2a(2)                                                                                           <------ZmHOX2a(2)                                                            <---------YAB1                --------->ARR14(2)                                                    ------>MYB83                          <---------ARR11(3)          --------->YAB1                            ------>MYB46(1)                       <---------ARR14(3)        --------->ANAC58                           ----------->RAV1(1)                    --------->ARR14(3)        --------->ANAC58                         --------->MYB46(3)                       --------->ARR11(3)   --------->ANAC46                         --------->TOE2(3)                             <---------ARR14(2)   --------->ANAC58                        <---------ICU4  --------->AHL20(1)             <---------AGP1   --------->ANAC58                        --------->ATHB12<---------AHL20(2)            <---------CCA1(2)  <-------MYC3                             --------->YAB1 <---------AHL20(2)            <-------TEIL-  ------->MYC3                            --------->ICU4  --------->YAB1                ----------->ARR10 ---->WOX13(1)                     ----------->GT1------->GAMYB                        <--------P --- --->AHL20(2)           --------->YAB1    <---------ATHB12--------->AHL20(2)        <---------TOE2(3) ----AHL20(2)          <---------YAB1    <---------ARR11(3)<---------AHL20(1)       --------->MYB59<-   atcacatgccactcaaaacgatgttattatagacaaatggcaaaatcattaaccaacaaattatatttctatcgattagagcaacttaggtagatcttgc  12407900                                                                                               <-----                                                                                          -----------                                                                                      ---------->DOF2        --------->TOE2(3)                                                          <---------------AGL15  --------->LBD16                                                                  --------->TOE2(3) -------ARR14(2)                                    <---------AHL20(2)            ----------------->AGL3 -----ANAC58                                  --------->ANAC46      <-----------GT1--------------->AGL15 -----ANAC58                --------->ARR14(2)--------->ANAC58  --------->GLK1(2) ----------------->AGL2 ----->ZmHOX2a(2)           <---------ARR14(2)--------->ANAC58 <---------GLK1(2)--------->ARR14(2) -- ------>ARR14(2)       ------->TEIL    --------->ZAT6 <-----------GT1           <---------ARR14(2) -- -----ZmHOX2a(2)  --------->YAB1--------->LBD16     --------->AHL20(2)          --------->GLK1(2)  --   gatccgaaaaacttaaacaaacatgaatcaaatccagataaacactagacgaaattaaactatacgattcttactacttgagaatccataaagagcaaaa  12408000                                          <------ZmHOX2a(2)                                      <---------TOE2(3)                                  --------->AGP1           --------->GLK1(2)   ----------->RAV1(1)   --------->ANAC58               --------->ARR11(3)      <---------GLK1(2) --------->ANAC46   --------->ANAC58           <---------At4g35610       --------->ANAC58    --------->ANAC58   ------ ----MYB52(2)               <---------WRKY12   <---------ARR11(3)           --------->AtLEC2  ------>ZmHOX2a(2) >GT1                       <---------WRKY38(1)--------->ARR11(3)           --------->ANAC58 <------ZmHOX2a(2) ------->ANAC46            --------->WRKY18(1) <-----------ARR10--------->ARR14(2)          --------- ------->ANAC58          --------->WOX13(1)   <---------GLK1(2) <---------ARR14(2)          <-------- ------->ANAC58      --------->YAB1<------ZmHOX2a(2)    --------->ANAC58 <-------TEIL       <--------   aacgcaagtcagaacaaattccatgatcagtcaacagatcaaggatcaaaatctcagcaagaatcggaaacgaggctcatgcaacacaaactccgatcgg  12408100                                                                                        <-------TEIL                                                             <---------ARR14(2)         <---------ZAT14                                                             --------->ARR14(2)      --------->LBD16                                                            --------->GLK1(1)      <---------LBD16                                                         <------NtERF2        --------->ARR11(3)                                                        <---------HSFB2a(2)   <---------GLK1(2)                                                        --------->HSFB2a(2)   <---------ARR11(3)                                                       --------->ETT(1)       --------->ARR14(2)   --       <---------GLK1(1)                               <---------ANAC46       <---------ARR14(2)   --       --------->GLK1(1)                              --------->ALFIN1      ----------->ARR10     --- ----->GT1                                        ==========================HOX2a_HOX2a --------->ZAT14 >ARR14(2)                                 --------->TOE1(2)<---------GLK1(1)--------->YAB1      ---- -ARR14(2)      --------->LBD16  <---------MYB52(2)  <-----------HVH21    ---------->DOF2  --------->ANAC46 -MYB52(1)    <---------LBD16 --------->MYB46(3)  ------>ZmHOX2a(2)  ------>ZmHOX2a(1)<---------MYB52(1)   ttaaacgagaaatctcaccggaaaacatcccaacaactatccattccttcgatcgggtcgggaaatccgtccttggcaaagatactccggtacactggac  12408200                                                                         ------>ZmHOX2a(2)                                                                       --------->ARR11(3)                                                                       <---------ARR11(3)                                                            --------->ZAT2                                                            =================RAV                                                            --------->At4g35610                                                            ----------->RAV1(2)                                                            <---------At4g35610                                                            <---------ZAT2 ---->MYB46(1)                                             <-----------RAV1(1) ---->MYB83                                              <---------At4g35610 ------>MYB52(1)                                   ------->TEIL ----------->HVH21 ----->MYB46(3)          <----------DOF2       <---------ARR11(3)----------->RAV1(1)                <   caactgatggtcttccatcgctaccttctttgccttcttcaacttggaagatgtatttcttctgctgcgacatgatctctctctctctctctctacttcg  12408300                                               <---------ARR14(2)                                               --------->ARR14(2)                                             *TSS                                          <---------ANAC46                                          <                                       ----------->HVH21                                            <                                     ----------->RAV1(2)          ----------->GT1                  <-                                  --------->HSFC1(2)     ------>ZmHOX2a(2)                         <-                                  <---------HSFB2a(1)   <------ZmHOX2a(2)                          <-                                  --------->HSFB2a(1)  --------->ARR14(2)                         <-- XXXXXXXXXXXXXXXXXXXMIR156G       <---------HSFC1(2)   <---------ARR14(2)                       <----   ttctcgttctcttctctctctatctgtagaacgagaaacttctgacgcgttttctcagatcggagaagaagttaatagagactttcaactacgactgcga  12408400                                                                           --------->YAB1                                                                          <---------YAB1                                                                        --------->YAB1 <--------P                                                           ------->TEIL ---------ANAC58                                                   --------->ANAC55(1) ---------ANAC58                                                   --------->ANAC55(2) -----MYB83                       ---------->DOF2                  --------->ANAC46 -----MYB46(1)              ---------->DOF2                     --------->ARR14(2)         --------->DAG2 --------MYB46(3)      --------->TOE2(3)                        <---------ARR14(2)        ---------->DOF2 -------AtMYB61        --------->TOE1(3)            <---------YAB1 <---------ANAC55(2)   <---------ATHB12 --------CBF----------->HVH21--------->DAG2   <-----------GT1<---------ANAC46    --------->MYB59   ttggttgctactcactgaccataaacctgaaaaagtcaaagtcatattcaacctcttattgggccgtatacgtatcatcatattaggcccaataaagtca  12408500                                               <---------TOE2(3)                                          --------->YAB1                                         <---------YAB1                                         <---------AHL20(2)          --------->DAG2                 -                                      <---------AHL20(2)            <XXXXXXXXXXXXXXXXXXXXMIR407------                                     --------->AHL20(2)             ---------->DOF2    <---------AHL20(2)                                 <---------TOE2(3)       <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->AHL20(2)                --------->AHL20(2) --------->ARR11(3)  --------->ANAC58           <---------YAB1    < <-----------GT1<---------AHL20(2) <---------ARR11(3)  --------->ANAC58 --------->ALFIN1       <-----   tattatccaaattgaaatttatattagccaatatttagattttataattaagatgtcaagaaacaaaacaaaaagtgtgtgattttgatttaaataactt  12408600                           <---------AHL20(2)                      <---------AHL20(2)                           --------->AHL20(2)                      --------->AHL20(2)                <-----------GT1                                 <--------HAHB4               <-----------GT1                                  <---------ICU4           <---------AHL20(1)                                  --------->ICU4           --------->AHL20(1)  <---------AHL20(1)            --------->TOE2(3)           <---------ARR11(3)  <---------AHL20(2)        --------->TOE2(2)      <---------YAB1      <---------AHL20(2)             --------->TOE1(2)     <-----------GT1      <---------AHL20(1)         <---------AHL20(2)   <---------AHL20(2)     --------->AHL20(2)         --------->AHL20(2) -------->ARR11(3)    <---------ALFIN1          <---------YAB1 <---------YAB1     <-----------GT1 --->TOE2(3)  <---------AHL20(2)<---------AHL20(2)  <---------ATHB12           <---------ICU4 ---------ARR11(3)   --------->LBD16      <---------TOE2(3)  --------->YAB1   <---------YAB1 -----DOF2 --------->AHL20(2)  --------->AHL20(2) --------->WOX13(1)       <---------YAB1   tagattttatcaatattttatcccccaatttaattttttttttagaggttatcaattaatctacgataattaaaaatatgcttattactctattagtatg  12408700                                      <---------YAB1                                     <---------ARR11(3)                                     --------->ARR11(3)                             <-----------GT1                                    --------->YAB1                            <---------AHL20(2)                                   <---------YAB1<---------ICU4         <---------AHL20(2)                                 --------->CCA1(2)         --------->YAB1     --------->AHL20(2)                                --------->ARR14(2)        <---------YAB1--------->AHL20(2)        <--          ----------->ARR10     <---------ARR14(2)--------->TOE2(3) --------->AHL20(2)     --------->YAB1   tgtgtttgtggatagatttgactagttgcacacagatatgatatttgttaaacattagttatcaaaacaaaaaaataaatataaattttcaattcataaa  12408800  Previous    Next  AGI:  At4g23850.1    Description:  long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase. similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT4G11030.1); similar to LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2) [Arabidopsis thaliana] (TAIR:AT1G49430.1); similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT1G64400.1); similar to acyl-CoA synthetase [Brassica napus] (GB:CAA64327.1); similar to ACS-like protein [Gossypium hirsutum] (GB:ABA00144.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96686. Range:  from: 12403464    to: 12408345    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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