Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <----------------                                                                                  --------->DEAR3(1)                                                                                 <------NtERF2                                                                                 --------->ATERF1(1)                                                                                <---------RAP2.3(1)                                                                                ------>NtERF2                                                                                <---------ATERF1(1)                                                   --------->SPL7              <---------DEAR3(1)                                                  <---------ARR14(2)        --------->O2<---------ARR14(2)                                    <------ZmHOX2a(2)      ------->GAMYB    --------->ANAC58                                   <---------ARR14(3)      ===========================MYC_MYB                           <---------MYB52(1)     --------->ARR14(2)        --------->ANAC46                          <-------GAMYB        <---------------AtSPL3       --------->ANAC58                         <------MYB83------>ZmHOX2a(2)    --------->ANAC55(2)  --------->DEAR3(1)                         <------MYB46(1) --------------->AtSPL3       --------->LBD16  <---------GLK1(2)                         <---------DEAR3(2)<---------SPL7 <---------ANAC55(2)<-----------HVH21   --------->AtMYB61  ------------>MYB.PH3(1)--------->MYB52(1)----------------------->TaNAC69(2) ------>SPL7       ---------->DOF2 <---------ARR14(2)     --------->ANAC58  --------->bZIP60(2) ------MYB52(1) ------>NtERF2      --------->AGP1<---------MYB52(1) <---------LBD16------>NtERF2 -----SPL7  --------->ANAC58       --------->ARR14(2)     --------->ANAC58  <---------O2--------->ARR14(2) --At5g28300<---------ALFIN1       --------->ARR11(3)   --------->MYB52(1)  --------->TGA1a ---GT1     --------->ANAC58       --------->ARR14(3)<---------ANAC55(2)    <---------TGA1a    ------ ---->WRI1  --------->ANAC46       <---------ARR11(3)--------->ANAC55(2)  <---------ALFIN1   --------   ttcgaccatctccaacgcctccaaagtcggttatcgagatcttatcgtaccggtaccgtaacggaactataccggaacacgtcgcctccgaatcgcccaa  12400000                                                                                              <------                                                                                              -------                                                                                              -------                                                                                              <------         --------->MYB52(1)                                                                   ------- -----WRI1                    <------ZmHOX2a(1)                                   <------ZmHOX2a(1) --->MYB52(1)                ----------->GT1                                    <---------TOE2(3) --- ->MYB46(3)                 ----------->GT1         <---------ALFIN1   ----------->GT1  ----------->GT1   cgaagacgaagaaacgaagagacatgagaagaggaaaattgacacagagagtctccacattttcgatgaagagaggtttatttaggatgagagtaaaatc  12400100                                                                           <---------ANAC55(2)                                                                           <---------TGA1a                                                                           --------->TGA1a                                                                           ==========================                                                                           <---------O2                                                                           --------->ANAC46                                                                           ===================MYC_MYB                                                                           --------->ANAC55(2)                                                                       --------->CCA1(2)                                                                 --------->ALFIN1                                                                <-------MYC2                                                                ------->MYC3                                                                ------->PIF4                                                                ------->MYC4                                                                <-------PIF4                                                                <-------MYC3                                                                <-------MYC4<-------MYC3                                                                <-------PIF5------->MYC3                                                                ------->PIF5------->MYC2         --------->At4g35610                                    ------->MYC2<-------MYC2   <------------CBF                                            --------->ANAC55(2)  <---------ARR14(2)                                           <---------TGA1a *TSS    <---------At4g35610                                   ===============================MYC_MYB ---ARR11(3)                                                   ======================bZIP_bZIP -->ARR11(3)                                                   <---------ANAC55(2) -->GLK1(2)  <---------YAB1                                   ------------>OsbHLH66 ---ARR14(2) <---------TOE1(3)    <---------ALFIN1            <-------TEIL --------->O2 -->ARR14(2) <---------TOE2(3) --------->ETT(2)<-------TEIL  <------------OsbHLH66    ------->GAMYB ------>At4g35610     <---------YAB1           ------------>CBF--------->TGA1a     --------->MYB52(1)   tgcagaattggagctaagattagtatgatatagtcgacactcgacaacgttcaatagaagaaggcacgtgctgatacacgtgaatcaacgggccatataa  12400200                                                                       <---------AHL20(2)                                         <----------DOF2           <---------AHL20(2)                               <------ZmHOX2a(1)                 <---------RVE1(1)                            --------->YAB1                      <---------ARR14(2)                <--                           <---------ATHB12                     --------->ARR14(2)         --------->AHL20(2)                      <-----------------AGL1                    <---------GLK1(2)          <---------AHL20(2)                      ----------------->AGL1                   <------NtERF2               <---------AHL20(1)              <----------DOF2<---------TOE2(3)               <---------ANAC46       <-----------GT1 ========================bZIP_DOF        <---------DAG2     <---------LBD16  <----------DOF2      <--   gctagaaacgtttgggctttagtggcccaataaggatgaacaactttttgttttttgtttttggcggatttttttaattctttgattttctattttattt  12400300                              ------>ZmHOX2a(2)                            --------->ARR14(2)                          <------MYB83                          <------MYB46(1)              *TSS                   ---------->DOF2                     <------ZmHOX2a(2)              --------->AHL20(2)                      <---------ARR11(3)             <---------YAB1 <---------ARR14(2)  --------->At4g35610                                <-          <---------YAB1<--------P              <---------At4g35610                                <-       <---------YAB1<---------TOE2(3)    >>>>>>>>>CBP60g     <---------GLK1(1)                   <--    <---------YAB1<---------AHL20(2)      >>>>>>>>>SARD1      --------->GLK1(1)                   <-- -------TOE2(3) ----------->TBP    ----------->GT1    --------->ARR11(3)                        <---- -------TOE1(3)<---------AHL20(2)<---------MYB52(1) ----------->ARR10                           -----   agggtttttattcttattatataaaggttggatcggtttgtgaaatttggagctaagatcagagatttcagcgatttggagattggagatggagagtcct  12400400                                                                  <---------ANAC58                                           --------->ALFIN1       <---------ANAC46                                    <---------GLK1(1)             <---------ANAC58                                    --------->GLK1(1)            <------NtERF2   <---------ANAC58                 --------->At4g35610        <---------DEAR3(1)   <---------ANAC58                 <---------At4g35610       <---------At4g35610   <---------ANAC46                ----------->ARR10          --------->At4g35610  <-------TEIL                     --------->ARR14(2)       ---------->CDC5 --------ANAC58       <---------ANAC58   <---------ANAC46  <---------ZAT14                   <XXXXXXX --------ANAC58       <---------ANAC58  <---------DEAR3(1)<-----------HVH21               <---------ALFIN1 -------AtMYB61      <---------HSFC1(2)<-------TEIL    ------>NtERF2<------NtERF2        ------>ZmHOX2a(1) ---------RAV1(1)    --------->HSFC1(2)<-----------------------TaNAC69(2)              --------->bZIP60(2) ------DOF2     <---------TOE2(3)  <---------ARR14(2) <---------RAP2.6(2)      --------->GLK1(2) ->ZmHOX2a(1) ---------->DOF2  --------->At4g35610 <---------DEAR3(1)  <---------ZAT6 ------>NtERF2<-   ttggtgcgtctatgcttaaaggaagcttgtaagagcggagatgcggtggaacgatggcgacttcagcggcgtagtcttgagagtctgcctcctcaccttg  12400500                         ---------->DOF2                 --------->DEAR3(1)                <------NtERF2                --------->ATERF1(1)               <---------RAP2.3(1)               <---------ATERF1(1)               ------>NtERF2              --------->DEAR3(1)              <---------DEAR3(1)            <---------ATERF1(1)            <-----------HVH21           --------->ANAC46  <---------RAP2.6(2)         --------->ZAT14               ------>ZmHOX2a(2)         ------>ZmHOX2a(1)--------->DAG2       <---------MYB52(1)                  <---------YAB1 XXXXXXXXXXXXMIR3434*------>ZmHOX2a(1)     <---------MYB52(1)           ------>ZmHOX2a(1)         <-- --------At4g35610------>NtERF2     <----------DOF2      <---------ZAT14======================HOX2a_HOX2a   ctgatgctctcctccgtcgcctcctcaaaaagcggcttcttttcccttcgttactcgagtaaactcttcacttccttacatagttctgatcgtttctaat  12400600                                                                                 <------ZmHOX2a(2)                                                                                --------->ARR14(2)                                          <---------AHL20(2)                    --------->ARR11(3)                                        --------->AHL20(2)                <---------ANAC58                --------->HSFB2a(2)     <---------AHL20(2)                <---------ANAC58       <---                <---------HSFB2a(2)   --------->AHL20(2)                  <---------ANAC46  <--------       --------->GLK1(1)              <---------AHL20(2)                ------>ZmHOX2a(2)  --------->AHL20(2)       <---------GLK1(1)            --------->AHL20(2)            <---------ANAC58         <---------AHL20(2) --------->GLK1(2)                  <---------AHL20(2)            <---------ANAC58------>ZmHOX2a(2) ------->TEIL  ------>ZmHOX2a(2)  --------->AHL20(2)        <---------ARR11(3)  <---------ARR11(3) -------YAB1 --------->ARR11(3)   <---------AHL20(2)        --------->ARR11(3)  <---------ARR14(2)---   atgaatctgatttctgatctcgaaatgctgagctatatatatatatatatgcttcgatttgagatattgagtgatcgcttgggatcttagtttttaaatt  12400700                                             ------>ZmHOX2a(1)                                             --------->LBD16                                       -------->HAHB4                                       <---------ICU4                                      --------->ICU4                                       --------->LBD16                                      <---------YAB1                                      <---------ANAC55(2)                                    <---------ICU4                      <------MYB83      <---------ANAC46                                    --------->YAB1                      <------MYB46(1)   <---------ANAC58        <---------AHL20(2)         <---------ATHB51                    <---------AtMYB61  <---------HSFB2a(2) ------YAB1                        --------->AHL20(2)               <-----------RAV1(1)   <---------ANAC58 -AHL20(2)                         --------->ICU4       <---------At4g35610              <---------LBD16 ------>ATHB12  <-----------GT1    <---------AHL20(2)   --------->At4g35610      <-------TEIL     ---   tgattagaattttttttttttctgtattcatgttgaaataattattcctgaagtgtttagctgtagaattgtgttggtcttggtacatcgttgcggaaaa  12400800        <---------ANAC46        <---------ANAC58        <---------ANAC58        <---------AtLEC2     <---------WOX13(1)                                                                            --   <---------ICU4                                                                                 ---   -------->ATHB1                                                                                 <--   --------->YAB1                                                      <---------ARR14(2)         <--   --------->ATHB12         --------->ARR14(2)                        ===============================   <------------ATHB5       ------->TEIL                              ===============================   <--------ATHB1           <---------ARR14(2)                        <------ZmHOX2a(1)          ----  --------->ICU4--------->ANAC58                                   <---------At4g35610           <---  <---------ATHB12--------->ZAT14     --------->ANAC58          <---------ZAT14                  <---  <---------ATHB51<---------ZAT14     --------->ANAC46          --------->ZAT14 --------->GLK1(2)<---  <---------YAB1--------->ANAC58      --------->ANAC58          --------->REM1(2)                ---- --------------->ATHB9     <---------CCA1(2)            <----------DOF2--------->ARR14(2)  --------->GLK1(2)   tgcaatgattgcatggacactgaactattgtatctgtatcacacaactaaacaagactcttttctgtgcagaggattcaaatattctgtagagaatatag  12400900  Previous    Next  AGI:  At4g23820.1    Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G41870.1); similar to hypothetical protein OsI_006479 [Oryza sativa (indica cultivar-group)] (GB:EAY85246.1); similar to Os02g0256100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046468.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro doma Range:  from: 12397048    to: 12400101    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g23840.1    Description:  leucine-rich repeat family protein. similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G15740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69549.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 12400355    to: 12403413    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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