Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            <---------ICU4                                          --------->YAB1                                    <-----------TGA1                                <---------ARR14(2)                                --------->ARR14(2)                            <---------TOE2(3)                           --------->MYB52(1)                          ------->GAMYB  <---------ATHB12                         --------->ICU4                         <---------MYB111(1)                                      <---------YAB1                         <---------MYB52(2)                                     --------->YAB1                         <---------MYB55(2)                            ------>MYB83<---------ICU4                         <---------MYB46(2)                            ------>MYB46(1) ---------At4g35610      --------->MYB46(3)      <---------ICU4       --------->WOX13(1)       <----- -------->At4g35610 --------->ANAC46<-----------HVH21     <---------ATHB12    --------->AHL20(2)    -   tgagctaatttcaatttcaaatcagcaactaacgaattcgtcactcattactcatttcaaatcatctcataccaatccaatttcataattcaaaattcac  12399700                                                       <---------At4g35610                                                    <---------MYB52(1)                                                   <----------DOF2                                          --------->YAB1                                         <---                                  --------->At4g35610  --------->At4g35610                 <---------ARR11(3)                           --------->TOE1(3)      <---------DAG2                           --------->ARR11(3)        ----------->GT1    --------->TOE2(3)--------->ANAC46                <---------ANAC58     ---- ----At5g28300            ----------->RAV1(2)  <---------ALFIN1             <---------ANAC58    ----- -------->YAB1          <-----------GT1   <-----------GT1     ---------->DOF2             <---------At4g35610   agtgataaaccagaaaatttgaaattttacctgaacagctctaatcacagcacctttagctaagtaaagagtcatatggctagtgagattgaagctctcc  12399800                                                                         <------NtERF2                                                                        ------>NtERF2                                                                        --------->ABI4(1)                                                                       --------->RAP2.3(2)                                                                       --------->RAP2.6(2)                                                                       --------->RAP2.3(3)                                                                      --------->ATERF1(1)                                                                      --------->DEAR4(2)           --------->LBD16                        <---------GLK1(2)   --------->ERF1-----------------           --------->HSFB2a(2)        ------>ZmHOX2a(1)  --------->ARR14(2)     --------->ANAC58           <---------HSFB2a(2)       <---------ALFIN1    <---------ARR14(2)     --------->ANAC58          <---------LBD16          ------>NtERF2 <---------At4g35610  --------->ORA47(2)          ---       --------->ANAC46      <---------ANAC58    --------->At4g35610  --------->RAP2.3(1)        <--- --------HVH21           ---------->DOF2   ------>ZmHOX2a(1)         <---------ATERF1(1)     <------- ----->LBD16   ----------->GT1  <---------ATERF1(1) --------->At4g35610--------->DEAR3(1)   <-------- ---->ANAC46--------->LBD16  <---------ANAC58<-----------HVH21  ---------->DOF2 --------->ANAC46<----   gtcaaatacactcccggaggtatatacaaaagcgtgcctcctctcctcttcagatgctgaatccgataaatcgccgccctaaacgccttagtattcaccg  12399900                                                                                    <----------------                                                                                  --------->DEAR3(1)                                                                                 --------->ATERF1(1)                                                                                 <------NtERF2                                                                                <---------RAP2.3(1)                                                                                ------>NtERF2                                                                                <---------ATERF1(1)                                                   --------->SPL7              <---------DEAR3(1)                                                  <---------ARR14(2)        --------->ANAC58                                    <------ZmHOX2a(2)      ------->GAMYB    --------->ANAC58                                   --------->ARR14(3)      ===========================MYC_MYB                           <---------MYB52(1)     --------->ARR14(2)        <---------TGA1a                          <-------GAMYB        <---------------AtSPL3       <---------O2--------->ARR14(2)                         <---------DEAR3(2)<---------SPL7 --------->ANAC58  --------->TGA1a                         <------MYB83------>ZmHOX2a(2)    --------->ANAC55(2)  --------->DEAR3(1)                         <------MYB46(1) --------------->AtSPL3       --------->LBD16  <---------GLK1(2)   --------->AtMYB61  ------------>MYB.PH3(1)--------->MYB52(1)----------------------->TaNAC69(2) ---->WRI1         ---------->DOF2 --------->AGP1<---------MYB52(1) <---------LBD16------>NtERF2 ------>SPL7--------->ANAC46       <---------ARR11(3)     <---------ANAC55(2)<-----------HVH21 ------MYB52(1) ------>NtERF2      <---------ARR14(3)     --------->ANAC58  --------->O2<---------ARR14(2) --At5g28300--------->ANAC58       --------->ARR11(3)   --------->MYB52(1)  --------->bZIP60(2) ---GT1     --------->ANAC58       <---------ARR14(2)<---------ANAC55(2)    --------->ANAC46   ------ -----SPL7  <---------ALFIN1       --------->ARR14(2)--------->ANAC55(2)  <---------ALFIN1   --------   ttcgaccatctccaacgcctccaaagtcggttatcgagatcttatcgtaccggtaccgtaacggaactataccggaacacgtcgcctccgaatcgcccaa  12400000                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              <------         --------->MYB52(1)                                                                   ------- -----WRI1                    <------ZmHOX2a(1)                                   <------ZmHOX2a(1) --->MYB52(1)                ----------->GT1                                    <---------TOE2(3) --- ->MYB46(3)                 ----------->GT1         <---------ALFIN1   ----------->GT1  ----------->GT1   cgaagacgaagaaacgaagagacatgagaagaggaaaattgacacagagagtctccacattttcgatgaagagaggtttatttaggatgagagtaaaatc  12400100                                                                           ==========================                                                                           --------->ANAC46                                                                           ===================MYC_MYB                                                                           <---------ANAC55(2)                                                                           --------->TGA1a                                                                           --------->O2                                                                           <---------O2                                                                           <---------TGA1a                                                                       --------->CCA1(2)                                                                 --------->ALFIN1                                                                ------->MYC4                                                                <-------MYC4                                                                ------->MYC2                                                                <-------MYC3                                                                ------->PIF5                                                                ------->PIF4                                                                <-------PIF4------->MYC3                                                                ------->MYC3<-------MYC3                                                                <-------PIF5<-------MYC2         <---------At4g35610                                    <-------MYC2------->MYC2   <------------CBF                                            ===============================MYC_MYB  <---------ARR14(2)                                           --------->ANAC55(2) *TSS    --------->At4g35610                                   ======================bZIP_bZIP -->GLK1(2)                                                    <---------TGA1a -->ARR11(3)                                                   <---------ANAC55(2) ---ARR14(2) <---------TOE2(3)                                ------------>OsbHLH66 ---ARR11(3) <---------TOE1(3)    <---------ALFIN1            <-------TEIL --------->ANAC55(2) -->ARR14(2) <---------YAB1    --------->ETT(2)<-------TEIL  <------------OsbHLH66    ------->GAMYB ------>At4g35610     <---------YAB1           ------------>CBF--------->TGA1a     --------->MYB52(1)   tgcagaattggagctaagattagtatgatatagtcgacactcgacaacgttcaatagaagaaggcacgtgctgatacacgtgaatcaacgggccatataa  12400200                                                                       <---------AHL20(2)                                         <----------DOF2           <---------AHL20(2)                               <------ZmHOX2a(1)                 <---------RVE1(1)                            --------->YAB1                      <---------GLK1(2)                 <--                           <---------ATHB12                     --------->ARR14(2)         <---------AHL20(1)                      <-----------------AGL1                    <---------ARR14(2)         --------->AHL20(2)                      ----------------->AGL1                   <------NtERF2               <---------AHL20(2)              <----------DOF2<---------TOE2(3)               <---------ANAC46       <-----------GT1 ========================bZIP_DOF        <---------DAG2     <---------LBD16  <----------DOF2      <--   gctagaaacgtttgggctttagtggcccaataaggatgaacaactttttgttttttgtttttggcggatttttttaattctttgattttctattttattt  12400300                              ------>ZmHOX2a(2)                            --------->ARR14(2)                          <------MYB46(1)                          <------MYB83                 <------ZmHOX2a(2)                   ---------->DOF2                     *TSS              --------->AHL20(2)                      --------->ARR11(3)             <---------YAB1 <---------ARR14(2)  --------->At4g35610                                <-          <---------YAB1<--------P              <---------At4g35610                                <-       <---------YAB1<---------TOE2(3)    >>>>>>>>>SARD1      --------->GLK1(1)                   <--    <---------YAB1<---------AHL20(2)      >>>>>>>>>CBP60g     <---------GLK1(1)                   <-- -------TOE2(3) ----------->TBP    ----------->GT1    <---------ARR11(3)                        <---- -------TOE1(3)<---------AHL20(2)<---------MYB52(1) ----------->ARR10                           -----   agggtttttattcttattatataaaggttggatcggtttgtgaaatttggagctaagatcagagatttcagcgatttggagattggagatggagagtcct  12400400                                                                  <---------ANAC58                                           --------->ALFIN1       <---------ANAC58                                    --------->At4g35610           <---------ANAC46                                    <---------GLK1(1)            <------NtERF2   <---------ANAC46                 --------->GLK1(1)          <---------DEAR3(1)   <---------ANAC58                 <---------At4g35610       <---------At4g35610   <---------ANAC58                <---------ARR14(2)         --------->At4g35610  <-------TEIL                     ----------->ARR10        ---------->CDC5 --------ANAC58       <---------ANAC58   <---------ANAC46  <---------ZAT14                   <XXXXXXX --------ANAC58       <---------ANAC58  <---------DEAR3(1)<-----------HVH21               <---------ALFIN1 -------AtMYB61      --------->HSFC1(2)<-------TEIL    ------>NtERF2<------NtERF2        ------>ZmHOX2a(1) ---------RAV1(1)    <---------HSFC1(2)<-----------------------TaNAC69(2)              --------->bZIP60(2) ------DOF2     <---------TOE2(3)  --------->ARR14(2) <---------RAP2.6(2)      --------->GLK1(2) ->ZmHOX2a(1) ---------->DOF2  --------->At4g35610 <---------DEAR3(1)  <---------ZAT6 ------>NtERF2<-   ttggtgcgtctatgcttaaaggaagcttgtaagagcggagatgcggtggaacgatggcgacttcagcggcgtagtcttgagagtctgcctcctcaccttg  12400500                         ---------->DOF2                 --------->DEAR3(1)                --------->ATERF1(1)                <------NtERF2               <---------ATERF1(1)               ------>NtERF2               <---------RAP2.3(1)              <---------DEAR3(1)              --------->DEAR3(1)            <-----------HVH21            <---------ATERF1(1)           --------->ANAC46  <---------RAP2.6(2)         <---------ZAT14               ------>ZmHOX2a(2)         ------>ZmHOX2a(1)--------->DAG2       <---------MYB52(1)                  <---------YAB1 XXXXXXXXXXXXMIR3434*------>ZmHOX2a(1)     <---------MYB52(1)           ======================HOX2a_HOX2a --------At4g35610------>NtERF2     <----------DOF2      --------->ZAT14------>ZmHOX2a(1)         <--   ctgatgctctcctccgtcgcctcctcaaaaagcggcttcttttcccttcgttactcgagtaaactcttcacttccttacatagttctgatcgtttctaat  12400600  Previous    Next  AGI:  At4g23820.1    Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G41870.1); similar to hypothetical protein OsI_006479 [Oryza sativa (indica cultivar-group)] (GB:EAY85246.1); similar to Os02g0256100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046468.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro doma Range:  from: 12397048    to: 12400101    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g23840.1    Description:  leucine-rich repeat family protein. similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G15740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69549.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 12400355    to: 12403413    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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