Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   ------>ZmHOX2a(2)                                                 ================HOX2a_HOX2a                                                --------->GLK1(1)                                                <------ZmHOX2a(2)                                                <---------GLK1(1)                                                =================HOX2a_HOX2a                     <---           --------->ANAC58                    --------->ARR11(3)                 <---------ARR14(2)           --------->ANAC58                    <---------ARR11(3)                 --------->GLK1(2) --NtERF2 <---------ZAT18             --------->At4g35610 <------ZmHOX2a(1)       --------->ARR14(2) >NtERF2<---------SPL7==================================HOX2a_HOX2a              <---------GLK1(2) ---DEAR3(1)          =================================HOX2a_HOX2a     --------->At4g35610       ---- ---ANAC46--------->ZAT18          <---------At4g35610  <---------TOE2(2)        --------->ARR14(2)-- -->DEAR3(1)          <------ZmHOX2a(1)       --------->GLK1(1)    <---------ARR14(2)     --------->MYB52(2) ->RAP2.3(1)   <---------DEAR3(1)  --------->At4g35610  <---------TOE1(2)  --------->REM1(1)    ----- --AtMYB77--------->SPL7 <---------WRKY18(1)  <---------GLK1(1)    --------->ARR14(2)   <---------MYB52(1)   cggaataagttgtacgctcggtgaggatgaccagtttagcagaagaagagatctctcgtaggaagaaactatctgcttcaccagaatctcgttagtctca  12393600                                          <---------ZAT2                                          <---------At4g35610                                          <---------HSFB2a(1)           <---------DEAR3(1)             <---------HSFC1(2)          <------NtERF2                   --------->HSFC1(2)          <---------LBD16            <------NtERF2          --------->ATERF1(1)       ------>NtERF2         ------>NtERF2              <---------ATERF1(1)         <---------RAP2.3(1)       --------->DEAR3(1)        <---------DEAR3(1)         ----------->HVH21        --------->DEAR3(1)         <---------DEAR3(1)       <------NtERF2              --------->RAP2.3(1)       --------->ATERF1(1)        --------->ATERF1(1)      <---------ATERF1(1)         <------NtERF2      <-----------HVH21          <---------ATERF1(1)     --------->DEAR3(1)          ------>NtERF2 --------->HSFB2a(2)   --------->At4g35610           <---------RAP2.3(1)  ------->GAMYB                 <---------DEAR3(1)    <---------ANAC58 --------->MYB46(3)       ----------->TGA1--------->HSFB2a(1)              <------NtERF2 <---------MYB55(2)     --------->YAB1   <-----------ARR10        <---------DAG2 ------At4g35610        <---------ICU4<---------DEAR3(1)    ----------->HVH21 ----->At4g35610 <---------YAB1--------->ATERF1(1)    <---------ANAC58    --------->RAP2.6(2) ------- --------->RAV1(1)     --------->ICU4--------->ATERF1(1)  ----------->RAV1(2)                 ------- ---->ANAC46--------->LBD16  --------->ETT(2)  <---------HSFB2a(2)<----------DOF2        --------->YAB1   gcaacagccgtcgccggtgatgaaaatgatgacgacggcgacggagcttctctaagtcgtgcctgaagctttttggccgcatcaaatccattgataagct  12393700                                                              --------------->AGL15    <---------TOE2(3)                                           <---------------AGL15                 ---------->ID1                                           --------------->AGL15                <-----------GT1                                          ====================================MADS_MADS--------->MYB59                                          <-----------------AGL2          <---------AHL20(2)                                          ----------------->AGL2        <---------RVE1(1)                                          <-----------------AGL3       <---------GLK1(2)         ----                               <---------ARR11(3)             <---------------AGL15  <---------MYB52(1)           <----------DOF2     --------->ARR11(3)            ----------------->AGL2 <----------DOF2 -->At4g35610  <---------At4g35610        ----------------->AGL3       --------->ARR11(3)     ------- -->ZAT2<---------ARR11(3)    <---------CCA1(2)         <---------YAB1 <---------ARR11(3)     <------   cgcttagcaatgtcttttgctcccaacttaacatatctcttccttccatttttagtatatgattcccaaaatagattttttttttcctttaggtagttta  12393800                                ----------->GT1       <---------------------WRI1   <------ZmHOX2a(1)       ---------->DOF2                                                      <---- ----->ZAT6            <---------YAB1                     <---------ATHB12                    ------- -->ZAT14            --------->YAB1                     --------->WOX13(1)                  --------- ---ZAT18           <---------YAB1            <----------DOF2      ----------->GT1   ---------->DOF2   ctctaggaaattgatacaaactatgatgagaaagatgtataatgtgtgttttaagtataaatcaagaattggttatatagatggactgaaagaatgatat  12393900                          <---------YAB1                      ----------->GT1                      <---------ANAC46         <---------AHL20(1)                                                              <------MYB83         <---------AHL20(2)                                                              <------MYB46(1)         --------->AHL20(1)                                      <---------YAB1          ----------->GT1 ----------->GT1  --------->REM1(2)                           <---------YAB1            <---------MYB46(3) -----YAB1<---------AHL20(2)          ----------->GT1       --------->CCA1(2)           <---------AtMYB61 -->CCA1(2)       <-------GAMYB <---------YAB1            --------->YAB1             <------ZmHOX2a(1) >YAB1   --------->AHL20(2)     <---------TOE2(3)      --------->YAB1        <---------ZAT6 *TSS   gatcagaaaaatataatgtgtgttgagtataattaagaatgggttatatagattgaagaatgatatgatgagaatgagagtgttataggattggtgataa  12394000                                                                                      <---------AHL20(2)                                                                                   --------->AHL20(1)                                                                                  --------->AHL20(2)                 ----------->GT1                                                  --------->ATHB51                 <---------ANAC46                                                 <---------ICU4                 <------MYB46(1)                                                 --------->ICU4                 <------MYB83                                                  <---------ICU4                --------->MYB46(2)                                             --------->YAB1                --------->MYB59                                               --------->AHL20(2)                --------->MYB111(1)                                  ------>MYB46(1)  <---------AHL20(1)                <---------AtMYB61                                    ------>MYB83<---------YAB1            <---------MYB46(3)                                     --------->AtMYB61  --------->AHL20(2)            <------MYB46(1)                                        <---------MYB59<---------AHL20(2)            <------MYB83                                     ------>MYB46(1)  <---------AHL20(2)           <---------AtMYB61       <---------GLK1(2)         ------>MYB83     <---------ATHB51          <--------P <-----------TBP                    >>>>>>>>>>WRKY38      --------->ICU4        <-----------RAV1(1)   <------------CBF          >>>>>>>>>>WRKY26    --------->YAB1         --        --------->ALFIN1---------->DOF2                 <-----------GT1 --------->TOE2(3)    <-------        <---------ZAT6 <---------AHL20(2)               >>>>>>>>>>WRKY43--------->TOE1(3) <----------   aaatggatgagtgttggtttggtatataaaggcattggattttcagtgtttgaaaatttgaccaaatgaccaaaccataaataattattttatttctttt  12394100                                                                                    <---------MYB46(3)                                                                                   <---------AtMYB61                                                                                 <---------MYB46(3)                                                                                 <------MYB46(1)                                                                                 <------MYB83                                                                                <---------DEAR3(1)                                                                                <---------AtMYB61                                                                                --------->ALFIN1                                                                               <---------ABI4(1)                                                                              <---------ANAC46                            ---------->DOF2                                   <---------ANAC58 -------->DOF2    <---------------AGL15      <------ZmHOX2a(1)                <---------ANAC58 ---DOF2          --------------->AGL15    <---------TOE2(3)               --------->ALFIN1---------- -GT1<----------ID1XXXXXXXXXXXXXXXXXXXX>MIR159B                    <---------WOX13(1)    <---------ZAT6   taaaagagagacaaaactttcaaattgaagaaaagtctttggtataaggaagtatagggccagagtgtaattgataagtggggtggtggtagtgaaagag  12394200                                                                                  <-------GAMYB                                                                                 <------MYB46(1)                                                                                 ----------->GT1                                                                                 <------MYB83                                                                           --------->ZAT14                                                                       <-----------GT1              <                                                                      <---------AHL20(2)    ---------     <---------WRKY38(1)                                              --------->AHL20(2)    <--------     <---------WRKY12                                             <---------AHL20(2)    --------->YAB1   <-----------HVH21                              <-----------GT1 --------->AHL20(2)    <---------AHL20(2)  <----------ID1        <---------ICU4         <---------REM1(1) --------->AHL20(2)     --------->AHL20(2) >DOF2      ----------->HVH21           <---------TOE2(3)    <---------YAB1<---------ZAT14  <--------   tataaggtcaaaggctgaccaattcaacatttcaattttgttaatgtagttgtaaccaagtttatcatttatttaactatagtgggttaattatataatt  12394300                                                                                    <---------AHL20(2)                                                                                  <---------YAB1                                                                                --------->YAB1                                                                                <--------HAHB4                                                                               <---------YAB1                                                                        --------->ARR14(1)                                                                        --------->GLK1(2)     --------->MYB52(1)                                                --------->ARR11(3)    ---------->DOF2                           --------->TOE2(2)        <---------GLK1(2) ----------->RAV1(1)              <---------ZAT18                      --------->ARR14(2) ----------ID1                --------------->AtSPL8                   <---------ARR14(2) >AHL20(2)         ------->GAMYB  --------->ZAT18                    ----------->ARR10              < -AHL20(2)        <------------AtMYB77<----------DOF2<----------DOF2 <---------TOE2(3)        <------ -YAB1  ----------->GT1  <----------DOF2      --------->TOE1(2)      <---------YAB1--------->AHL20(2)   agacaacaaagggttatacaactgtctctttcaatgtacactttcaaaactacgactttgtacatgtgattaagattctctattattatatgtttttttc  12394400                                                            <---------ANAC58                                                            <---------ANAC58                                                            <-------GAMYB                                                           --------->MYB55(2)                                                           <---------MYB46(3)                                                           --------->MYB52(2)                                                           <------MYB83                                           --------->ARR11(3)       <----------DOF2                                           --------->AHL20(1) <---------MYB46(3)                                           <---------ARR11(3)<--------P                       <------                                <---------AHL20(2)         <------MYB46(1)                 ------->GAMYB        <---------GLK1(2)   <---------AHL20(2)            <---------AtMYB61               <---------MYB111(2)    ---------->DOF2        <---------AHL20(2)         --------->ARR11(3)                  <---------- ---------ZAT6    <---------AHL20(1)       <---------AHL20(1)<---------WOX13(1)           --------->MYB46(3) -----GT1         <---------ARR11(3)  <---------TOE2(3)<-----------RAV1(1)                <---------MYB55(2)   tactgttaaagaatttccaatatatgttttttatttgattaagaatattttcaaaatatgttggttgatgctttactagtatgcattatgcaacaacctt  12394500  Previous    Next  AGI:  At4g23810.1    Description:  WRKY53 (WRKY DNA-binding protein 53); DNA binding / protein binding / transcription activator/ transcription factor. Identical to Probable WRKY transcription factor 53 (WRKY53) [Arabidopsis Thaliana] (GB:Q9SUP6); similar to WRKY41 (WRKY DNA-binding protein 41), transcription factor [Arabidopsis thaliana] (TAIR:AT4G11070.1); similar to WRKY53 transcription factor [Thlaspi caerulescens] (GB:ABN79278.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) Range:  from: 12392380    to: 12393992    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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