Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <------NtERF2    --------->LBD16   --------->DEAR3(1)  --------->ATERF1(1)  <---------LBD16  <------NtERF2  --------->RAP2.3(1) --------->ABI4(1) ------>NtERF2 <---------ATERF1(1) ---------ATERF1(2) -------->RAP2.3(3) ---------DEAR3(1) -------->DEAR3(1) -------->ATERF1(2) -------->RAP2.3(2) ------->ERF1  <---------LBD16 ------->DEAR4(2) ------->ORA47(2) ------->RAP2.3(1) ------->ATERF1(1)                                                           <-----------GT1 -------ATERF1(1)                                    --------->MYB52(1)  <----------DOF2 -------RAP2.3(1)--------->LBD16                    ----------->HVH21    <---------DAG2 ---->SPL7    --------->MYB52(1)                    --------->ANAC46    <---------ANAC58 ---SPL7     --------->MYB52(1)                     --------->ANAC58    <---------ANAC58 --ANAC58    --------->ARR14(2)                   <---------AtLEC2  <---------ANAC58                - --ANAC58    <---------ARR14(2)           <---------ZAT6     ----------->RAV1(1)                   -- --ANAC46  <---------KAN4(2)       <---------ANAC46 --------->ANAC58<---------ANAC58          -------   cgccgccggagagaataaccggaggttttgtagggttttgggtagtgtttttgcacgacggagcaacattgtttgctttttaccagtgagagagagagac  12316700                          <---------ZAT2                                        --------->KAN4(1)                          --------->ZAT2                          <---------DEAR3(1)          <---------At4g35610                                  <---------bZIP60(1)        --------->ZAT18   --------->At4g35610                  <---------O2   <---------GLK1(2) <---------------------WRI1        --------->HSFB2a(2)         --------->O2--------->HSFB2a(2) ----->NtERF2             <---------At4g35610                  --------->bZIP60(1)          <-------- ------->DEAR3(1)        *TSS      <---------HSFB2a(2)  <---------AHL20(2) <---------HSFB2a(2)------- -->CCA1(2)             <------ZmHOX2a(1)            --------->YAB1 <------NtERF2  ------------>CBF   gacgacgaagtgagcaaatgggtttaggagctgtgttacagaaatggggtttctctaataaaacgacgtcgtcgtttctagattattcaatgggctttaa  12316800                                                                                              -------                                                                                            <--------                                                                                            <--------                                                                                   <----------TaMYB80                                                                                   --------->HSFB2a(1)                                                                                   <---------HSFB2a(1)                                                                                   <---------KAN4(1)                                                                                   <---------GLK1(1)                                                                    ----------->GT1--------->GLK1(1)                                                                  <---------GLK1(2)--------->KAN4(1)                               <-----------GT1                   <---------At4g35610      <---------MYB52(1)                              <---------YAB1                   <-----------RAV1(2)--------->ARR14(2)                            <---------ICU4                   <-----------HVH21    <---------ARR14(2)                 --------->At4g35610                      ---------->DOF2         ---------->TaMYB80 --DOF2 <----------DOF2     --------->YAB1         --------->MYB52(1)        --------->MYB52(1) -->AHL20(2)     <---------At4g35610              ---------->DOF2--------->At4g35610--------->KAN4(2)   atgttatgggctttaacttagctcaacccattataactgcatttgatttgaacaaagggcaaaagtcagatgcttaattcaacggatattccatttgttg  12316900                                                          <---------YAB1                                                       <---------AHL20(2)                                                    <---------ARR11(3)                                                    <---------AHL20(2)                                                    --------->ARR11(3)                                                    <---------AHL20(1) --->ID1                                            --------->AHL20(1) -MYB46(3)                               <----------DOF2  <---------TOE2(3) ---RAV1(1)                        ---------->DOF2  --------->AHL20(2)     --------->At4g35610   tttttgtaaatgaccaatttgctcttaatgtataccacaaaggctttagtggaatatattatggtaagggtgaagtcgtctgaacaaaaaatatgactcc  12317000                                                                             --------->YAB1                                                                           <-----------GT1                                                                      <---------ARR11(3)                                                                      --------->AHL20(1)                                                                      --------->ARR11(3)                                    <---------ICU4                   *TSS<---------AHL20(2)                                   --------->AHL20(2)               <---------AHL20(2)                                   <---------AHL20(2)          --------->TOE2(3)                                   --------->AHL20(1)          <---------MYB59    --------->ANAC58                                  --------->AHL20(2)     --------------->AtSPL3   --------->ANAC58                            ----------->GT1         <---------O2    --------->AHL20(1)          -----                          ---------->DOF2           <---------TGA1a <---------AHL20(1)          -----                          ====================================bZIP_DOF<---------AHL20(1)       <-----                      <---------ETT(2) <-----------GT1   --------------->AtSPL8 <---------ICU4 <-----   atttaagtagctcgtcttgttctctcgacaaagaaaaaaaattacatttctcagacgttgcagtacctaaaatattttttcatcatgccattaccctatc  12317100        <---------AHL20(2)       <---------YAB1    <---------AHL20(2)    --------->AHL20(2) ---->YAB1 ---->ATHB12                                     <----------DOF2 ----YAB1        <---------ANAC46             <-----------GT1 ----ATHB12   <-----------RAV1(1)<---------At4g35610        --------->AtLEC2   atttgttttattatttgtgttgtgttctctcatggagcttctactatttcactttgtcttccatgtacaaggtaattgtctgagttattcgaaacacaat  12317200                              <---------YAB1                            --------->AHL20(2)                            --------->ATHB51                           <---------YAB1                           --------->ICU4                     ------->TEIL                   --------->ZAT18                   --------->ZAT14                   <---------ZAT14                                       <----------DOF2                   <---------ZAT18                       <---------MYB52(1)          <---------PCF2                 --------------->AtSPL8         <---------TOE2(3)     --------->GLK1(2)        <-----                <---------ANAC46                <---------TOE1(3) --------->LBD16    --------->PCF2   acatcggtttgagcatttttgtgtacttcattatttatggaccataacttgaggtttcagtttgtttccgagcatctttttgtaatgggcccatgagaga  12317300                                         --------->ATHB12                                       <----------DOF2                                       <---------DAG2 <---------DAG2                                 --------------->AtSPL8 <----------DOF2                              --------->ATHB12     <---------ALFIN1         <---------ANAC58     --------->ATHB51  <---------TCP20         <---------ANAC58    <---------MYB52(1) --------->PCF2                                      < ----ZAT14         <---------WOX13(1) <-----------------AGL3                <-----------GT1  <-------   actgatactgggcttgatcagattgatgtccattatttgtgctttattgggctccactctttctcactctcacattttttacaaggttttctcttctttt  12317400                                                     <-----------GT1                                               <---------AHL20(2)                                               <---------AHL20(1)          <-----------GT1                                               --------->AHL20(1)     <---------MYB52(1)                                              --------->YAB1         --------->TOE2(3)              -                                              --------->AHL20(2)   <---------TOE2(3)                <                                             <---------YAB1       <-----------GT1         --------->YAB1               <----------DOF2             <--------HAHB4        --------->YAB1          <---------YAB1            <-----------GT1                --------->YAB1       <---------YAB1<----------DOF2       < -----------GT1<---------DAG2             <---------YAB1<----------DOF2    <---------AHL20(2) <------ ---DOF2  <-----------GT1         <-----------GT1   <<<<<<<<<<GT-3b<---------YAB1   ------>NtERF2<---   ttttacacctattttcacttttctatgtgttttgttttacacctattattatatttttctttgcctattatcgttattttctttgccgactatcattttt  12317500                                        <---------AHL20(2)                                       --------->YAB1                                      <---------YAB1                                     --------->AHL20(2)                                     <---------AHL20(1)                                     --------->AHL20(1)                                     <---------AHL20(2)                                    --------->YAB1                                   <---------YAB1                              --------->TOE2(3)                                                   ---                             <---------ANAC58                                                  <-----           <-----------GT1   <---------ANAC55(2)                                               ------ -------->HSFB2a(2)          <---------YAB1                        ------>ZmHOX2a(1)           ------ ---------HSFC1(1)           <---------ANAC58             >>>>>>>>>ARR2 ----------->HVH21   --------- ---------HSFB2a(2)          <---------ANAC55(1) --------->GLK1(2) <----------DOF2          --------- ---AHL20(2)                 <---------ANAC46 <---------TOE2(3) ---------->ID1            <---------ANAC55(2) --------GT1               <-----------GT1--------->YAB1 --------->ATHB12           ---------->DOF2   ttctagacgttatatactgttttagaatattacgtttattataatattaagaatttgtttgattgtgtccttttttgacgcagacagaaagaacgtgacg  12317600  Previous    Next  AGI:  At4g23620.1    Description:  50S ribosomal protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66860.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65887.1); contains InterPro domain Ribosomal protein L25; (InterPro:IPR001021); contains InterPro domain Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding; (InterPro:IPR011035) Range:  from: 12314593    to: 12316725    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g23630.1    Description:  BTI1 (VIRB2-INTERACTING PROTEIN 1). similar to BTI2 (VIRB2-INTERACTING PROTEIN 2) [Arabidopsis thaliana] (TAIR:AT4G11220.1); similar to unknown [Populus trichocarpa] (GB:ABK93406.1); contains InterPro domain Reticulon; (InterPro:IPR003388) Range:  from: 12317069    to: 12319947    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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